Wall clock time and date at job start Mon Mar 30 2020 04:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47259 * 2 1 4 4 C 1.53004 * 109.46987 * 120.00414 * 2 1 3 5 5 C 1.50698 * 109.46656 * 183.54254 * 4 2 1 6 6 H 1.07992 * 120.00381 * 5.06681 * 5 4 2 7 7 C 1.37878 * 119.99652 * 185.06809 * 5 4 2 8 8 N 1.31519 * 120.00032 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00113 * 359.97438 * 7 5 4 10 10 H 1.48496 * 109.46857 * 90.00260 * 9 7 5 11 11 H 1.48495 * 109.47105 * 210.00544 * 9 7 5 12 12 H 1.48504 * 109.46911 * 330.00021 * 9 7 5 13 13 N 1.46903 * 109.46641 * 240.00033 * 2 1 3 14 14 C 1.46845 * 111.00280 * 72.95876 * 13 2 1 15 15 C 1.53032 * 109.52579 * 174.15529 * 14 13 2 16 16 C 1.53124 * 109.27766 * 59.17969 * 15 14 13 17 17 O 1.42906 * 109.52168 * 62.24944 * 16 15 14 18 18 C 1.52991 * 109.57435 * 182.40770 * 16 15 14 19 19 N 1.46903 * 109.47158 * 304.71393 * 18 16 15 20 20 C 1.53117 * 109.15809 * 302.34692 * 16 15 14 21 21 C 1.46843 * 111.00203 * 308.74132 * 13 2 1 22 22 H 1.09000 * 109.46662 * 300.00176 * 1 2 3 23 23 H 1.08998 * 109.47009 * 59.99721 * 1 2 3 24 24 H 1.08995 * 109.47259 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46895 * 303.54093 * 4 2 1 26 26 H 1.08991 * 109.47139 * 63.53868 * 4 2 1 27 27 H 0.97003 * 119.99833 * 179.97438 * 8 7 5 28 28 H 1.09002 * 109.45933 * 294.17887 * 14 13 2 29 29 H 1.09006 * 109.46488 * 54.13765 * 14 13 2 30 30 H 1.08995 * 109.50490 * 299.23832 * 15 14 13 31 31 H 1.09006 * 109.50128 * 179.11906 * 15 14 13 32 32 H 0.96704 * 113.99864 * 60.31665 * 17 16 15 33 33 H 1.09005 * 109.47213 * 64.71169 * 18 16 15 34 34 H 1.09000 * 109.47351 * 184.71412 * 18 16 15 35 35 H 1.00904 * 110.99876 * 180.02562 * 19 18 16 36 36 H 1.00891 * 111.00081 * 303.95375 * 19 18 16 37 37 H 1.08999 * 109.50020 * 297.71024 * 20 16 15 38 38 H 1.09003 * 109.53255 * 177.61824 * 20 16 15 39 39 H 1.08994 * 109.46440 * 305.86093 * 21 13 2 40 40 H 1.09001 * 109.45949 * 65.84307 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5444 -0.6457 1.2938 6 1 4.0781 -0.0658 0.5556 7 6 4.2395 -1.3171 2.2773 8 7 5.5525 -1.2508 2.3166 9 14 3.3164 -2.3198 3.5548 10 1 3.1525 -3.7127 3.0668 11 1 4.0831 -2.3278 4.8264 12 1 1.9796 -1.7159 3.7866 13 7 2.0196 -0.6925 -1.1995 14 6 1.8162 0.1275 -2.4005 15 6 2.4663 -0.5583 -3.6043 16 6 1.8401 -1.9424 -3.7965 17 8 0.4461 -1.8010 -4.0776 18 6 2.5266 -2.6582 -4.9614 19 7 2.4539 -1.8177 -6.1639 20 6 2.0233 -2.7592 -2.5144 21 6 1.3861 -2.0096 -1.3422 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 1.6258 -0.2455 2.1381 26 1 1.7294 -1.7656 1.2180 27 1 6.0414 -1.7228 3.0087 28 1 0.7481 0.2458 -2.5829 29 1 2.2698 1.1076 -2.2523 30 1 3.5367 -0.6644 -3.4284 31 1 2.3016 0.0430 -4.4984 32 1 0.2559 -1.2930 -4.8782 33 1 3.5710 -2.8428 -4.7097 34 1 2.0253 -3.6074 -5.1507 35 1 2.9004 -2.2690 -6.9481 36 1 1.4979 -1.5789 -6.3809 37 1 3.0868 -2.9000 -2.3214 38 1 1.5426 -3.7308 -2.6295 39 1 1.5273 -2.5818 -0.4253 40 1 0.3201 -1.8814 -1.5298 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695864155.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:04 Heat of formation + Delta-G solvation = -78.320498 kcal Electronic energy + Delta-G solvation = -18933.618640 eV Core-core repulsion = 16167.689671 eV Total energy + Delta-G solvation = -2765.928968 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.92299 -38.45447 -35.15790 -34.65026 -33.82341 -31.95970 -30.79170 -29.41195 -26.67914 -24.77852 -24.11019 -22.79845 -21.15401 -20.12634 -18.75742 -17.86852 -17.16406 -16.54977 -16.41976 -15.83516 -15.65176 -15.33556 -14.99105 -14.74515 -14.37511 -14.22506 -13.99161 -13.61621 -13.36473 -13.22324 -12.93950 -12.77709 -12.58834 -12.38976 -12.07740 -12.02866 -11.72750 -11.62223 -11.38493 -11.28991 -10.90249 -10.71319 -10.64446 -9.60350 -8.80460 -8.15801 -6.13923 1.36918 1.38443 1.49700 2.42885 3.08784 3.22593 3.37839 3.50617 3.83046 3.90266 4.02648 4.18779 4.35907 4.40926 4.45155 4.52900 4.58380 4.63907 4.71138 4.78569 4.91133 4.94594 4.97934 5.06307 5.14723 5.17592 5.20796 5.26291 5.35369 5.45791 5.55971 5.77040 6.15878 6.40953 6.51168 6.57042 6.58652 6.85936 6.93015 7.46086 9.01798 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.030100 B = 0.006722 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.003356 B = 4164.460072 C = 4477.611021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 H 0.059 0.941 4 C -0.002 4.002 5 C -0.485 4.485 6 H 0.033 0.967 7 C -0.002 4.002 8 N -0.958 5.958 9 Si 0.942 3.058 10 H -0.272 1.272 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.534 5.534 14 C 0.059 3.941 15 C -0.117 4.117 16 C 0.145 3.855 17 O -0.565 6.565 18 C 0.044 3.956 19 N -0.847 5.847 20 C -0.104 4.104 21 C 0.066 3.934 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.055 0.945 25 H 0.018 0.982 26 H 0.016 0.984 27 H 0.260 0.740 28 H 0.040 0.960 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.383 0.617 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.354 0.646 36 H 0.345 0.655 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.053 0.947 40 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.025 -2.074 -15.716 19.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.011 4.011 3 H 0.077 0.923 4 C -0.040 4.040 5 C -0.523 4.523 6 H 0.052 0.948 7 C -0.196 4.196 8 N -0.601 5.601 9 Si 0.767 3.233 10 H -0.197 1.197 11 H -0.214 1.214 12 H -0.173 1.173 13 N -0.259 5.259 14 C -0.069 4.069 15 C -0.156 4.156 16 C 0.104 3.896 17 O -0.372 6.372 18 C -0.087 4.087 19 N -0.380 5.380 20 C -0.142 4.142 21 C -0.061 4.061 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.074 0.926 25 H 0.036 0.964 26 H 0.034 0.966 27 H 0.069 0.931 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.232 0.768 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.096 0.904 39 H 0.072 0.928 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.005 -2.029 -14.609 18.402 hybrid contribution -0.888 -0.755 -0.079 1.169 sum -11.893 -2.784 -14.688 19.103 Atomic orbital electron populations 1.22375 0.96651 1.01925 1.02115 1.21487 0.92258 0.96960 0.90428 0.92267 1.19603 0.94751 0.95691 0.93909 1.21235 0.91623 1.28492 1.10976 0.94828 1.25906 0.95446 0.98181 1.00110 1.70084 1.08071 1.45953 1.35976 0.85786 0.79614 0.79497 0.78453 1.19722 1.21426 1.17336 1.61926 1.58655 1.03169 1.02116 1.22034 0.98581 0.96133 0.90148 1.21984 0.99816 0.96407 0.97351 1.21096 0.80901 0.94308 0.93288 1.86551 1.23556 1.77648 1.49462 1.22299 1.00970 0.94395 0.91085 1.58665 1.23446 1.48885 1.07005 1.21559 1.01322 0.98379 0.92920 1.21868 0.96041 0.90518 0.97711 0.91767 0.92088 0.92612 0.96376 0.96627 0.93095 0.94208 0.92366 0.92732 0.88970 0.76774 0.90909 0.94217 0.83225 0.84080 0.91373 0.90402 0.92843 0.94003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.52 8.40 71.98 0.60 -4.91 16 2 C 0.10 3.93 2.26 44.92 0.10 4.03 16 3 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 4 C 0.00 -0.10 3.47 29.85 0.10 0.01 16 5 C -0.48 -28.60 9.35 25.60 0.24 -28.36 16 6 H 0.03 2.22 7.99 -2.91 -0.02 2.20 16 7 C 0.00 -0.11 5.47 84.65 0.46 0.36 16 8 N -0.96 -62.10 13.96 21.45 0.30 -61.80 16 9 Si 0.94 45.91 27.37 68.60 1.88 47.79 16 10 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 12 H -0.25 -11.30 6.69 99.48 0.67 -10.63 16 13 N -0.53 -20.75 4.26 -871.12 -3.71 -24.46 16 14 C 0.06 1.88 5.04 86.32 0.44 2.31 16 15 C -0.12 -3.23 4.83 30.65 0.15 -3.08 16 16 C 0.14 3.56 0.79 -10.72 -0.01 3.55 16 17 O -0.56 -12.58 11.83 -148.98 -1.76 -14.34 16 18 C 0.04 0.87 6.00 86.30 0.52 1.39 16 19 N -0.85 -12.66 8.72 -186.72 -1.63 -14.28 16 20 C -0.10 -3.16 5.11 30.65 0.16 -3.00 16 21 C 0.07 2.36 4.33 86.33 0.37 2.73 16 22 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.06 1.75 6.93 -2.39 -0.02 1.73 16 24 H 0.05 1.76 6.45 -2.39 -0.02 1.75 16 25 H 0.02 0.86 7.55 -2.39 -0.02 0.84 16 26 H 0.02 0.74 5.54 -2.39 -0.01 0.73 16 27 H 0.26 15.84 8.31 -92.71 -0.77 15.07 16 28 H 0.04 1.18 6.60 -2.39 -0.02 1.16 16 29 H 0.06 1.93 7.98 -2.38 -0.02 1.91 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 2.14 7.58 -2.38 -0.02 2.12 16 32 H 0.38 5.57 7.62 -74.05 -0.56 5.01 16 33 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.35 4.14 9.08 -89.69 -0.81 3.33 16 36 H 0.35 3.83 7.57 -89.70 -0.68 3.15 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 2.13 6.28 -2.39 -0.02 2.11 16 40 H 0.04 1.41 6.19 -2.39 -0.01 1.39 16 Total: -1.00 -69.76 300.53 -2.84 -72.60 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -1.05 Total: 19.47 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 3.13 Total: -24.98 kcal Atomic # 7 Polarization: -95.50 SS G_CDS: -5.04 Total: -100.54 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: -1.76 Total: -14.34 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.79 kcal Total: -69.76 -2.84 -72.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695864155.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.723 kcal (2) G-P(sol) polarization free energy of solvation -69.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds