Wall clock time and date at job start Mon Mar 30 2020 04:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.50695 * 109.47112 * 175.00266 * 4 2 1 6 6 H 1.08006 * 119.99891 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00385 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99617 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00134 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47183 * 60.00466 * 9 7 5 11 11 H 1.48500 * 109.46821 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47565 * 300.00171 * 9 7 5 13 13 N 1.46902 * 109.46626 * 119.99824 * 2 1 3 14 14 C 1.46844 * 111.00001 * 59.21231 * 13 2 1 15 15 C 1.53043 * 109.52440 * 174.15596 * 14 13 2 16 16 C 1.53123 * 109.27564 * 59.17872 * 15 14 13 17 17 O 1.42894 * 109.52090 * 62.25204 * 16 15 14 18 18 C 1.53000 * 109.57362 * 182.41140 * 16 15 14 19 19 N 1.46895 * 109.46813 * 304.71369 * 18 16 15 20 20 C 1.53125 * 109.15934 * 302.34618 * 16 15 14 21 21 C 1.46842 * 111.00498 * 294.99838 * 13 2 1 22 22 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 26 26 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 27 27 H 0.97000 * 120.00438 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.46631 * 294.17085 * 14 13 2 29 29 H 1.09004 * 109.46374 * 54.14382 * 14 13 2 30 30 H 1.09003 * 109.50009 * 299.24397 * 15 14 13 31 31 H 1.08991 * 109.53660 * 179.14060 * 15 14 13 32 32 H 0.96697 * 114.00689 * 60.31491 * 17 16 15 33 33 H 1.08995 * 109.47084 * 64.71419 * 18 16 15 34 34 H 1.09002 * 109.46703 * 184.71560 * 18 16 15 35 35 H 1.00898 * 111.00384 * 56.05221 * 19 18 16 36 36 H 1.00908 * 110.99787 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.50117 * 297.71286 * 20 16 15 38 38 H 1.09002 * 109.53190 * 177.61475 * 20 16 15 39 39 H 1.09001 * 109.46266 * 305.86047 * 21 13 2 40 40 H 1.09007 * 109.46369 * 65.83397 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0855 -0.5395 7 6 4.2306 -1.1936 -2.3577 8 7 3.5766 -1.8378 -3.2994 9 14 6.0921 -1.0612 -2.4366 10 1 6.6846 -1.6863 -1.2269 11 1 6.5872 -1.7613 -3.6490 12 1 6.4846 0.3697 -2.4970 13 7 2.0196 -0.6925 1.1995 14 6 1.5334 -2.0774 1.2429 15 6 2.1776 -2.8089 2.4228 16 6 1.8221 -2.0824 3.7230 17 8 0.4064 -2.1117 3.9145 18 6 2.5119 -2.7731 4.9011 19 7 2.1488 -4.1964 4.9151 20 6 2.2964 -0.6293 3.6326 21 6 1.6488 0.0389 2.4177 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7517 -1.7715 -1.2056 26 1 1.6055 -0.2617 -2.1369 27 1 4.0609 -2.2446 -4.0348 28 1 0.4501 -2.0784 1.3628 29 1 1.7964 -2.5840 0.3142 30 1 3.2602 -2.8203 2.2966 31 1 1.8052 -3.8324 2.4643 32 1 0.0366 -3.0027 3.9806 33 1 3.5925 -2.6748 4.7979 34 1 2.1920 -2.3073 5.8332 35 1 2.3767 -4.6364 4.0362 36 1 2.5926 -4.6752 5.6846 37 1 3.3809 -0.6066 3.5254 38 1 2.0089 -0.0951 4.5381 39 1 1.9956 1.0695 2.3422 40 1 0.5648 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695864157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:08 Heat of formation + Delta-G solvation = -55.888747 kcal Electronic energy + Delta-G solvation = -18933.198285 eV Core-core repulsion = 16168.242030 eV Total energy + Delta-G solvation = -2764.956255 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.65045 -36.98561 -33.83322 -33.34616 -31.97284 -30.49360 -29.15911 -27.22948 -25.46824 -23.14711 -23.00965 -21.46576 -19.78710 -18.62995 -16.71323 -16.13505 -15.73854 -15.13499 -14.96371 -14.60547 -14.43678 -14.11307 -13.74854 -13.38716 -12.98983 -12.45584 -12.15431 -12.04347 -11.85284 -11.58113 -11.54649 -11.06785 -11.02161 -10.83685 -10.58378 -10.48878 -10.37614 -10.10614 -9.75526 -9.53067 -9.07848 -8.94727 -8.85613 -8.23860 -7.34041 -5.87478 -3.85106 3.40353 3.44202 3.47628 4.33350 4.43927 4.56569 4.68770 4.86249 5.05034 5.13480 5.45894 5.49630 5.58495 5.63285 5.80192 5.84013 5.93178 5.96240 6.05390 6.11253 6.14047 6.18606 6.32548 6.46432 6.51478 6.60752 6.73206 6.83475 6.91635 7.05250 7.20950 7.60651 7.75273 7.90966 8.00513 8.09843 8.16298 8.60826 9.20877 9.76225 11.24500 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.007084 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.509477 B = 3951.734613 C = 4494.626373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.028 3.972 5 C -0.489 4.489 6 H 0.060 0.940 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.279 1.279 13 N -0.511 5.511 14 C 0.061 3.939 15 C -0.141 4.141 16 C 0.138 3.862 17 O -0.554 6.554 18 C 0.034 3.966 19 N -0.853 5.853 20 C -0.099 4.099 21 C 0.056 3.944 22 H 0.053 0.947 23 H 0.051 0.949 24 H 0.041 0.959 25 H 0.020 0.980 26 H 0.018 0.982 27 H 0.257 0.743 28 H 0.030 0.970 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.376 0.624 33 H 0.036 0.964 34 H 0.075 0.925 35 H 0.343 0.657 36 H 0.340 0.660 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.606 -2.036 14.607 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.009 4.009 5 C -0.528 4.528 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.205 1.205 13 N -0.235 5.235 14 C -0.067 4.067 15 C -0.180 4.180 16 C 0.097 3.903 17 O -0.360 6.360 18 C -0.097 4.097 19 N -0.384 5.384 20 C -0.138 4.138 21 C -0.072 4.072 22 H 0.072 0.928 23 H 0.070 0.930 24 H 0.060 0.940 25 H 0.038 0.962 26 H 0.036 0.964 27 H 0.067 0.933 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.223 0.777 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.720 -1.230 14.499 15.019 hybrid contribution 1.211 -0.800 -0.167 1.461 sum -2.509 -2.030 14.331 14.690 Atomic orbital electron populations 1.22506 0.99808 1.01276 1.00578 1.21886 0.90067 0.98329 0.91808 0.91362 1.19233 0.96297 0.95363 0.89981 1.21150 0.91836 1.32871 1.06935 0.92209 1.25006 0.97925 0.95960 0.96015 1.69952 1.35258 1.36977 1.12350 0.86703 0.86478 0.78004 0.76999 1.20486 1.21686 1.20509 1.62063 1.59182 1.01295 1.00949 1.21959 0.96167 0.90170 0.98364 1.22249 1.02340 0.98380 0.95001 1.21220 0.81229 0.95648 0.92240 1.86464 1.20583 1.33447 1.95514 1.22521 0.97908 0.89221 1.00028 1.58770 1.67279 1.03338 1.09059 1.21540 1.00885 0.93097 0.98248 1.21959 0.97844 0.97247 0.90180 0.92778 0.93007 0.93991 0.96209 0.96411 0.93295 0.95212 0.89334 0.90587 0.91767 0.77653 0.94610 0.90615 0.84287 0.84743 0.90189 0.91706 0.91623 0.94594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.33 8.50 37.16 0.32 -3.01 16 2 C 0.09 1.82 2.30 -67.71 -0.16 1.67 16 3 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 4 C 0.03 0.72 4.27 -27.89 -0.12 0.60 16 5 C -0.49 -13.72 8.84 -34.44 -0.30 -14.02 16 6 H 0.06 1.68 7.74 -52.48 -0.41 1.27 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.26 13.29 55.43 0.74 -26.52 16 9 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 N -0.51 -9.87 4.36 -226.69 -0.99 -10.86 16 14 C 0.06 1.12 4.51 -3.83 -0.02 1.10 16 15 C -0.14 -2.10 4.55 -26.65 -0.12 -2.22 16 16 C 0.14 1.84 0.79 -90.49 -0.07 1.77 16 17 O -0.55 -7.79 11.84 -35.23 -0.42 -8.20 16 18 C 0.03 0.38 6.04 -3.83 -0.02 0.36 16 19 N -0.85 -8.15 9.15 -10.37 -0.09 -8.25 16 20 C -0.10 -1.42 5.11 -26.65 -0.14 -1.55 16 21 C 0.06 0.93 4.89 -3.84 -0.02 0.91 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.05 0.95 6.52 -51.93 -0.34 0.61 16 24 H 0.04 0.70 6.65 -51.93 -0.35 0.35 16 25 H 0.02 0.53 6.05 -51.93 -0.31 0.22 16 26 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.03 0.54 6.24 -51.93 -0.32 0.21 16 29 H 0.09 1.87 5.93 -51.93 -0.31 1.57 16 30 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.06 0.84 6.67 -51.93 -0.35 0.49 16 32 H 0.38 4.50 8.66 45.56 0.39 4.90 16 33 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.34 3.24 6.95 -39.29 -0.27 2.97 16 36 H 0.34 2.65 9.08 -39.29 -0.36 2.29 16 37 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.06 8.08 -51.93 -0.42 0.64 16 40 H 0.04 0.62 6.35 -51.92 -0.33 0.29 16 LS Contribution 303.03 15.07 4.57 4.57 Total: -1.00 -30.26 303.03 -7.85 -38.11 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.88 Total: 7.19 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.75 Total: -13.06 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: -0.35 Total: -45.62 kcal Atomic # 8 Polarization: -7.79 SS G_CDS: -0.42 Total: -8.20 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.26 -7.85 -38.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695864157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.780 kcal (2) G-P(sol) polarization free energy of solvation -30.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds