Wall clock time and date at job start Mon Mar 30 2020 04:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.52997 * 109.47164 * 239.99996 * 2 1 3 5 5 C 1.50695 * 109.47112 * 175.00266 * 4 2 1 6 6 H 1.08006 * 119.99891 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00385 * 179.97438 * 5 4 2 8 8 N 1.31509 * 119.99617 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00134 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47183 * 60.00466 * 9 7 5 11 11 H 1.48500 * 109.46821 * 180.02562 * 9 7 5 12 12 H 1.48494 * 109.47565 * 300.00171 * 9 7 5 13 13 N 1.46902 * 109.46626 * 119.99824 * 2 1 3 14 14 C 1.46844 * 111.00001 * 59.21231 * 13 2 1 15 15 C 1.53043 * 109.52440 * 174.15596 * 14 13 2 16 16 C 1.53123 * 109.27564 * 59.17872 * 15 14 13 17 17 O 1.42894 * 109.52090 * 62.25204 * 16 15 14 18 18 C 1.53000 * 109.57362 * 182.41140 * 16 15 14 19 19 N 1.46895 * 109.46813 * 304.71369 * 18 16 15 20 20 C 1.53125 * 109.15934 * 302.34618 * 16 15 14 21 21 C 1.46842 * 111.00498 * 294.99838 * 13 2 1 22 22 H 1.09001 * 109.46998 * 59.99708 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46801 * 300.00112 * 1 2 3 25 25 H 1.09001 * 109.47096 * 295.00066 * 4 2 1 26 26 H 1.08994 * 109.47065 * 55.00225 * 4 2 1 27 27 H 0.97000 * 120.00438 * 179.97438 * 8 7 5 28 28 H 1.08994 * 109.46631 * 294.17085 * 14 13 2 29 29 H 1.09004 * 109.46374 * 54.14382 * 14 13 2 30 30 H 1.09003 * 109.50009 * 299.24397 * 15 14 13 31 31 H 1.08991 * 109.53660 * 179.14060 * 15 14 13 32 32 H 0.96697 * 114.00689 * 60.31491 * 17 16 15 33 33 H 1.08995 * 109.47084 * 64.71419 * 18 16 15 34 34 H 1.09002 * 109.46703 * 184.71560 * 18 16 15 35 35 H 1.00898 * 111.00384 * 56.05221 * 19 18 16 36 36 H 1.00908 * 110.99787 * 179.97438 * 19 18 16 37 37 H 1.08997 * 109.50117 * 297.71286 * 20 16 15 38 38 H 1.09002 * 109.53190 * 177.61475 * 20 16 15 39 39 H 1.09001 * 109.46266 * 305.86047 * 21 13 2 40 40 H 1.09007 * 109.46369 * 65.83397 * 21 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5419 -0.6149 -1.3126 6 1 4.0790 -0.0855 -0.5395 7 6 4.2306 -1.1936 -2.3577 8 7 3.5766 -1.8378 -3.2994 9 14 6.0921 -1.0612 -2.4366 10 1 6.6846 -1.6863 -1.2269 11 1 6.5872 -1.7613 -3.6490 12 1 6.4846 0.3697 -2.4970 13 7 2.0196 -0.6925 1.1995 14 6 1.5334 -2.0774 1.2429 15 6 2.1776 -2.8089 2.4228 16 6 1.8221 -2.0824 3.7230 17 8 0.4064 -2.1117 3.9145 18 6 2.5119 -2.7731 4.9011 19 7 2.1488 -4.1964 4.9151 20 6 2.2964 -0.6293 3.6326 21 6 1.6488 0.0389 2.4177 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.7517 -1.7715 -1.2056 26 1 1.6055 -0.2617 -2.1369 27 1 4.0609 -2.2446 -4.0348 28 1 0.4501 -2.0784 1.3628 29 1 1.7964 -2.5840 0.3142 30 1 3.2602 -2.8203 2.2966 31 1 1.8052 -3.8324 2.4643 32 1 0.0366 -3.0027 3.9806 33 1 3.5925 -2.6748 4.7979 34 1 2.1920 -2.3073 5.8332 35 1 2.3767 -4.6364 4.0362 36 1 2.5926 -4.6752 5.6846 37 1 3.3809 -0.6066 3.5254 38 1 2.0089 -0.0951 4.5381 39 1 1.9956 1.0695 2.3422 40 1 0.5648 0.0279 2.5321 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695864157.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:08 Heat of formation + Delta-G solvation = -80.154303 kcal Electronic energy + Delta-G solvation = -18934.250518 eV Core-core repulsion = 16168.242030 eV Total energy + Delta-G solvation = -2766.008488 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90843 -38.35907 -35.17120 -34.74399 -33.67166 -31.79647 -30.60917 -29.09802 -26.62035 -25.07728 -24.36813 -22.75091 -21.10690 -20.11722 -18.34765 -17.72886 -17.05617 -16.54228 -16.24758 -15.99120 -15.73680 -15.45435 -15.05243 -14.72189 -14.46267 -13.94455 -13.76276 -13.60051 -13.24692 -13.02053 -12.92692 -12.77742 -12.53173 -12.39863 -12.28787 -12.06606 -11.94807 -11.70713 -11.14402 -11.07794 -11.04458 -10.57666 -10.43483 -9.65038 -8.85670 -8.09166 -6.14194 1.41761 1.44300 1.51933 2.47614 3.11866 3.27283 3.42884 3.55628 3.81729 3.92111 4.04097 4.21491 4.36254 4.43040 4.46664 4.53143 4.61547 4.65530 4.69518 4.75631 4.86703 4.98529 5.05511 5.08516 5.17243 5.18720 5.22207 5.29549 5.42965 5.52627 5.71708 5.90818 6.14529 6.34890 6.49794 6.53468 6.57143 6.94309 6.99219 7.51433 9.02780 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024696 B = 0.007084 C = 0.006228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.509477 B = 3951.734613 C = 4494.626373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 H 0.063 0.937 4 C 0.035 3.965 5 C -0.499 4.499 6 H 0.058 0.942 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.957 3.043 10 H -0.271 1.271 11 H -0.288 1.288 12 H -0.271 1.271 13 N -0.526 5.526 14 C 0.066 3.934 15 C -0.134 4.134 16 C 0.143 3.857 17 O -0.564 6.564 18 C 0.043 3.957 19 N -0.853 5.853 20 C -0.099 4.099 21 C 0.058 3.942 22 H 0.055 0.945 23 H 0.046 0.954 24 H 0.062 0.938 25 H -0.001 1.001 26 H -0.010 1.010 27 H 0.259 0.741 28 H 0.031 0.969 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.385 0.615 33 H 0.039 0.961 34 H 0.082 0.918 35 H 0.344 0.656 36 H 0.353 0.647 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.013 -1.973 16.712 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.015 4.015 3 H 0.082 0.918 4 C -0.002 4.002 5 C -0.537 4.537 6 H 0.076 0.924 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.783 3.217 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.196 1.196 13 N -0.250 5.250 14 C -0.062 4.062 15 C -0.172 4.172 16 C 0.102 3.898 17 O -0.372 6.372 18 C -0.088 4.088 19 N -0.385 5.385 20 C -0.137 4.137 21 C -0.070 4.070 22 H 0.075 0.925 23 H 0.065 0.935 24 H 0.081 0.919 25 H 0.017 0.983 26 H 0.008 0.992 27 H 0.067 0.933 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.234 0.766 33 H 0.057 0.943 34 H 0.100 0.900 35 H 0.158 0.842 36 H 0.167 0.833 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -3.131 -1.171 16.632 16.964 hybrid contribution 0.977 -0.827 -0.835 1.528 sum -2.154 -1.997 15.796 16.067 Atomic orbital electron populations 1.22357 0.97643 1.01323 1.01683 1.21615 0.91773 0.97319 0.90817 0.91843 1.19079 0.95351 0.94392 0.91343 1.21439 0.93109 1.32447 1.06745 0.92416 1.25853 1.02888 0.95631 0.95677 1.70088 1.37177 1.37972 1.13021 0.85627 0.80556 0.78348 0.77208 1.19587 1.21350 1.19591 1.61995 1.59744 1.01878 1.01392 1.21844 0.96485 0.89738 0.98095 1.22195 1.01237 0.99248 0.94567 1.21133 0.81346 0.95146 0.92171 1.86440 1.20818 1.34419 1.95481 1.22357 0.97711 0.89840 0.98891 1.58734 1.67457 1.02709 1.09648 1.21557 1.00687 0.93742 0.97742 1.22005 0.97913 0.97401 0.89674 0.92546 0.93459 0.91930 0.98314 0.99215 0.93273 0.95076 0.93225 0.91768 0.89919 0.76607 0.94295 0.90005 0.84214 0.83342 0.90242 0.89744 0.91273 0.94842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.18 8.50 71.98 0.61 -5.57 16 2 C 0.09 3.95 2.30 44.92 0.10 4.05 16 3 H 0.06 2.72 8.08 -2.39 -0.02 2.71 16 4 C 0.04 1.88 4.27 29.85 0.13 2.01 16 5 C -0.50 -28.53 8.84 25.60 0.23 -28.30 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 7 C 0.00 -0.27 5.46 84.66 0.46 0.20 16 8 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 9 Si 0.96 45.44 29.54 68.60 2.03 47.46 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 N -0.53 -20.22 4.36 -871.12 -3.80 -24.01 16 14 C 0.07 2.43 4.51 86.33 0.39 2.82 16 15 C -0.13 -3.85 4.55 30.65 0.14 -3.71 16 16 C 0.14 3.50 0.79 -10.71 -0.01 3.49 16 17 O -0.56 -14.46 11.84 -148.98 -1.76 -16.22 16 18 C 0.04 0.84 6.04 86.30 0.52 1.36 16 19 N -0.85 -13.96 9.15 -186.73 -1.71 -15.67 16 20 C -0.10 -2.59 5.11 30.65 0.16 -2.44 16 21 C 0.06 1.83 4.89 86.32 0.42 2.25 16 22 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 23 H 0.05 1.73 6.52 -2.39 -0.02 1.71 16 24 H 0.06 2.00 6.65 -2.39 -0.02 1.98 16 25 H 0.00 -0.08 6.05 -2.39 -0.01 -0.09 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 28 H 0.03 1.12 6.24 -2.39 -0.01 1.11 16 29 H 0.05 2.19 5.93 -2.38 -0.01 2.18 16 30 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.08 2.03 6.67 -2.39 -0.02 2.02 16 32 H 0.38 8.25 8.66 -74.06 -0.64 7.61 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.34 5.67 6.95 -89.70 -0.62 5.04 16 36 H 0.35 4.47 9.08 -89.69 -0.81 3.65 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 39 H 0.07 2.11 8.08 -2.39 -0.02 2.09 16 40 H 0.03 1.08 6.35 -2.38 -0.02 1.06 16 Total: -1.00 -65.09 303.03 -2.84 -67.93 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -1.03 Total: 22.05 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 3.15 Total: -23.84 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -5.22 Total: -97.37 kcal Atomic # 8 Polarization: -14.46 SS G_CDS: -1.76 Total: -16.22 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -65.09 -2.84 -67.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695864157.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.225 kcal (2) G-P(sol) polarization free energy of solvation -65.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds