Wall clock time and date at job start Mon Mar 30 2020 04:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46900 * 110.99890 * 274.99873 * 12 2 1 14 14 C 1.52996 * 109.47450 * 180.02562 * 13 12 2 15 15 H 1.09008 * 109.50194 * 304.99994 * 14 13 12 16 16 C 1.53100 * 109.50844 * 184.91518 * 14 13 12 17 17 N 1.47016 * 109.25689 * 183.21487 * 16 14 13 18 18 C 1.46898 * 110.99806 * 182.39110 * 17 16 14 19 19 C 1.47012 * 110.75464 * 58.61493 * 17 16 14 20 20 C 1.53099 * 109.25698 * 301.38533 * 19 17 16 21 21 H 1.09004 * 109.50856 * 176.78335 * 20 19 17 22 22 C 1.52998 * 109.50444 * 296.86879 * 20 19 17 23 23 O 1.43011 * 109.50895 * 65.08600 * 14 13 12 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 28 28 H 1.00898 * 111.00476 * 38.95263 * 12 2 1 29 29 H 1.09002 * 109.47391 * 300.00224 * 13 12 2 30 30 H 1.09005 * 109.47266 * 59.99895 * 13 12 2 31 31 H 1.08991 * 109.50686 * 303.14624 * 16 14 13 32 32 H 1.08999 * 109.50650 * 63.28139 * 16 14 13 33 33 H 1.09002 * 109.47116 * 60.00438 * 18 17 16 34 34 H 1.09001 * 109.47254 * 179.97438 * 18 17 16 35 35 H 1.08990 * 109.47273 * 300.00151 * 18 17 16 36 36 H 1.08997 * 109.50674 * 61.31744 * 19 17 16 37 37 H 1.08998 * 109.51010 * 181.40480 * 19 17 16 38 38 H 1.08995 * 109.47664 * 60.00537 * 22 20 19 39 39 H 1.09002 * 109.47205 * 180.02562 * 22 20 19 40 40 H 1.09002 * 109.47253 * 299.99647 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5961 -0.5328 3.5742 15 1 1.9711 -1.4084 3.7506 16 6 2.5461 0.3859 4.7979 17 7 3.1122 -0.3193 5.9571 18 6 3.0313 0.5086 7.1678 19 6 4.4987 -0.7296 5.6911 20 6 4.5290 -1.6371 4.4584 21 1 5.5611 -1.8975 4.2234 22 6 3.7325 -2.9120 4.7429 23 8 3.9462 -0.9474 3.3493 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7096 1.1617 -3.4844 28 1 1.4495 -1.4979 1.4101 29 1 2.7588 1.0462 2.1183 30 1 1.0870 0.6163 2.5525 31 1 3.1270 1.2867 4.6007 32 1 1.5115 0.6576 5.0070 33 1 1.9880 0.7444 7.3777 34 1 3.4565 -0.0371 8.0102 35 1 3.5889 1.4324 7.0143 36 1 5.1108 0.1535 5.5080 37 1 4.8896 -1.2713 6.5523 38 1 2.7002 -2.6511 4.9761 39 1 3.7548 -3.5579 3.8651 40 1 4.1753 -3.4357 5.5901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697296474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:58 Heat of formation + Delta-G solvation = -39.349778 kcal Electronic energy + Delta-G solvation = -18327.921143 eV Core-core repulsion = 15563.682072 eV Total energy + Delta-G solvation = -2764.239071 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.83117 -36.15503 -35.46074 -33.16130 -31.73271 -29.89155 -28.00963 -27.06738 -25.17461 -24.72951 -23.06020 -21.60414 -20.16468 -19.27445 -16.55529 -16.40035 -15.92530 -15.26677 -15.15006 -14.61223 -14.49143 -13.81171 -13.73888 -13.29022 -12.94056 -12.72528 -12.30045 -12.16636 -11.89141 -11.74673 -11.57311 -11.55036 -11.10296 -10.99632 -10.83304 -10.68690 -10.48006 -10.09473 -10.06494 -9.70721 -9.32153 -8.91789 -8.45782 -8.29521 -7.10184 -5.91627 -3.93892 3.37843 3.43755 3.49653 3.73573 4.00290 4.50259 4.78838 4.87329 4.96335 5.09491 5.26204 5.32748 5.37224 5.40113 5.46691 5.50625 5.62035 5.65076 5.65605 5.74150 5.87565 5.99801 6.08886 6.22183 6.35654 6.51277 6.73447 6.84052 6.84293 6.88914 7.14930 7.41418 7.58384 7.79609 7.96981 8.35150 8.63344 8.70730 9.13911 9.71107 11.15646 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.039067 B = 0.005015 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.548326 B = 5582.286820 C = 6011.251223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.211 3.789 3 H 0.033 0.967 4 C -0.490 4.490 5 H 0.063 0.937 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.274 1.274 12 N -0.674 5.674 13 C 0.069 3.931 14 C 0.098 3.902 15 H 0.064 0.936 16 C 0.023 3.977 17 N -0.539 5.539 18 C 0.025 3.975 19 C 0.023 3.977 20 C 0.085 3.915 21 H 0.101 0.899 22 C -0.173 4.173 23 O -0.350 6.350 24 H 0.027 0.973 25 H 0.004 0.996 26 H 0.089 0.911 27 H 0.258 0.742 28 H 0.323 0.677 29 H 0.070 0.930 30 H 0.032 0.968 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.025 0.975 36 H 0.040 0.960 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.061 0.939 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.635 -2.084 17.845 18.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.050 0.950 4 C -0.529 4.529 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.199 1.199 12 N -0.303 5.303 13 C -0.062 4.062 14 C 0.039 3.961 15 H 0.082 0.918 16 C -0.106 4.106 17 N -0.264 5.264 18 C -0.123 4.123 19 C -0.105 4.105 20 C 0.026 3.974 21 H 0.119 0.881 22 C -0.230 4.230 23 O -0.269 6.269 24 H 0.047 0.953 25 H 0.023 0.977 26 H 0.107 0.893 27 H 0.068 0.932 28 H 0.140 0.860 29 H 0.089 0.911 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 4.058 -2.264 17.434 18.043 hybrid contribution -0.376 0.472 -0.410 0.729 sum 3.682 -1.793 17.024 17.510 Atomic orbital electron populations 1.22445 1.00835 0.99172 1.00409 1.19186 0.89420 0.94439 0.86657 0.94950 1.21180 1.29845 1.12314 0.89559 0.91891 1.24950 0.95444 0.95236 0.99020 1.69886 1.37647 1.23288 1.23211 0.86508 0.79271 0.79207 0.82472 1.20906 1.21453 1.19852 1.60705 1.58004 1.08601 1.02996 1.21863 0.98001 0.96106 0.90216 1.22213 0.84648 0.96094 0.93154 0.91779 1.22836 1.00552 0.96255 0.90947 1.62193 1.18964 1.41516 1.03704 1.22371 1.01974 0.95474 0.92518 1.22830 0.89126 0.99203 0.99378 1.22218 0.97930 0.91312 0.85902 0.88116 1.22258 1.01897 0.97340 1.01538 1.88267 1.26714 1.74873 1.37013 0.95336 0.97721 0.89281 0.93182 0.86041 0.91121 0.94996 0.93861 0.89888 0.91287 0.91447 0.95653 0.94154 0.90103 0.91257 0.91984 0.92436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.13 8.94 37.16 0.33 -3.80 16 2 C 0.21 5.44 2.57 -68.86 -0.18 5.26 16 3 H 0.03 0.92 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.96 8.84 -34.44 -0.30 -14.27 16 5 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 6 C 0.05 1.52 5.30 -17.82 -0.09 1.42 16 7 N -0.90 -26.23 11.32 55.43 0.63 -25.61 16 8 Si 0.90 21.99 29.54 -169.99 -5.02 16.97 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.67 -14.91 6.18 -107.95 -0.67 -15.58 16 13 C 0.07 1.28 5.15 -3.83 -0.02 1.26 16 14 C 0.10 1.54 2.58 -26.68 -0.07 1.47 16 15 H 0.06 1.01 6.50 -51.92 -0.34 0.67 16 16 C 0.02 0.30 4.95 -3.71 -0.02 0.28 16 17 N -0.54 -6.37 4.36 -242.61 -1.06 -7.43 16 18 C 0.02 0.23 9.60 60.06 0.58 0.81 16 19 C 0.02 0.26 5.08 -3.71 -0.02 0.24 16 20 C 0.08 1.11 3.92 -26.68 -0.10 1.00 16 21 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 22 C -0.17 -2.08 8.89 37.16 0.33 -1.75 16 23 O -0.35 -6.00 10.23 -35.23 -0.36 -6.36 16 24 H 0.03 0.66 8.13 -51.93 -0.42 0.24 16 25 H 0.00 0.08 7.45 -51.93 -0.39 -0.30 16 26 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.32 6.79 8.47 -39.29 -0.33 6.46 16 29 H 0.07 1.40 8.06 -51.93 -0.42 0.98 16 30 H 0.03 0.57 7.44 -51.93 -0.39 0.18 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.07 0.90 6.13 -51.93 -0.32 0.58 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -30.08 312.36 -8.43 -38.51 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -7.09 Total: 2.86 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: 0.43 Total: -8.07 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -1.10 Total: -48.61 kcal Atomic # 8 Polarization: -6.00 SS G_CDS: -0.36 Total: -6.36 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -30.08 -8.43 -38.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697296474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.839 kcal (2) G-P(sol) polarization free energy of solvation -30.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds