Wall clock time and date at job start Mon Mar 30 2020 04:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46900 * 110.99890 * 274.99873 * 12 2 1 14 14 C 1.52996 * 109.47450 * 180.02562 * 13 12 2 15 15 H 1.09008 * 109.50194 * 304.99994 * 14 13 12 16 16 C 1.53100 * 109.50844 * 184.91518 * 14 13 12 17 17 N 1.47016 * 109.25689 * 183.21487 * 16 14 13 18 18 C 1.46898 * 110.99806 * 182.39110 * 17 16 14 19 19 C 1.47012 * 110.75464 * 58.61493 * 17 16 14 20 20 C 1.53099 * 109.25698 * 301.38533 * 19 17 16 21 21 H 1.09004 * 109.50856 * 176.78335 * 20 19 17 22 22 C 1.52998 * 109.50444 * 296.86879 * 20 19 17 23 23 O 1.43011 * 109.50895 * 65.08600 * 14 13 12 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 27 27 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 28 28 H 1.00898 * 111.00476 * 38.95263 * 12 2 1 29 29 H 1.09002 * 109.47391 * 300.00224 * 13 12 2 30 30 H 1.09005 * 109.47266 * 59.99895 * 13 12 2 31 31 H 1.08991 * 109.50686 * 303.14624 * 16 14 13 32 32 H 1.08999 * 109.50650 * 63.28139 * 16 14 13 33 33 H 1.09002 * 109.47116 * 60.00438 * 18 17 16 34 34 H 1.09001 * 109.47254 * 179.97438 * 18 17 16 35 35 H 1.08990 * 109.47273 * 300.00151 * 18 17 16 36 36 H 1.08997 * 109.50674 * 61.31744 * 19 17 16 37 37 H 1.08998 * 109.51010 * 181.40480 * 19 17 16 38 38 H 1.08995 * 109.47664 * 60.00537 * 22 20 19 39 39 H 1.09002 * 109.47205 * 180.02562 * 22 20 19 40 40 H 1.09002 * 109.47253 * 299.99647 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2225 2.3469 14 6 2.5961 -0.5328 3.5742 15 1 1.9711 -1.4084 3.7506 16 6 2.5461 0.3859 4.7979 17 7 3.1122 -0.3193 5.9571 18 6 3.0313 0.5086 7.1678 19 6 4.4987 -0.7296 5.6911 20 6 4.5290 -1.6371 4.4584 21 1 5.5611 -1.8975 4.2234 22 6 3.7325 -2.9120 4.7429 23 8 3.9462 -0.9474 3.3493 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7096 1.1617 -3.4844 28 1 1.4495 -1.4979 1.4101 29 1 2.7588 1.0462 2.1183 30 1 1.0870 0.6163 2.5525 31 1 3.1270 1.2867 4.6007 32 1 1.5115 0.6576 5.0070 33 1 1.9880 0.7444 7.3777 34 1 3.4565 -0.0371 8.0102 35 1 3.5889 1.4324 7.0143 36 1 5.1108 0.1535 5.5080 37 1 4.8896 -1.2713 6.5523 38 1 2.7002 -2.6511 4.9761 39 1 3.7548 -3.5579 3.8651 40 1 4.1753 -3.4357 5.5901 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697296474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:57 Heat of formation + Delta-G solvation = -61.291738 kcal Electronic energy + Delta-G solvation = -18328.872617 eV Core-core repulsion = 15563.682072 eV Total energy + Delta-G solvation = -2765.190546 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.92027 -37.85905 -36.58212 -34.88104 -33.28967 -31.24422 -29.55454 -27.93080 -27.23491 -26.17048 -24.03550 -22.94083 -22.12046 -20.38558 -18.42690 -17.55036 -17.28097 -16.70941 -16.38870 -16.08048 -15.67994 -15.19971 -15.10093 -14.77286 -14.55081 -13.85041 -13.67569 -13.49565 -13.23464 -12.91333 -12.86029 -12.76516 -12.74236 -12.59636 -12.45062 -12.15887 -12.15081 -12.10688 -11.70482 -11.19053 -10.95980 -10.47215 -10.44805 -9.37967 -8.89785 -8.08125 -6.18859 1.43604 1.44334 1.56015 2.45604 2.79531 2.88776 3.19946 3.55279 3.90024 4.00828 4.07078 4.13540 4.20196 4.42069 4.45526 4.51378 4.59192 4.61680 4.64167 4.72308 4.75819 4.81484 4.89189 4.99672 5.00969 5.07363 5.10513 5.15668 5.42261 5.44134 5.71033 5.83014 5.90988 5.99735 6.28723 6.43016 6.67479 6.86256 6.96705 7.50984 8.97498 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.039067 B = 0.005015 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.548326 B = 5582.286820 C = 6011.251223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H -0.001 1.001 4 C -0.514 4.514 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.273 1.273 12 N -0.681 5.681 13 C 0.071 3.929 14 C 0.106 3.894 15 H 0.066 0.934 16 C 0.030 3.970 17 N -0.544 5.544 18 C 0.025 3.975 19 C 0.027 3.973 20 C 0.075 3.925 21 H 0.110 0.890 22 C -0.165 4.165 23 O -0.386 6.386 24 H 0.033 0.967 25 H 0.028 0.972 26 H 0.062 0.938 27 H 0.261 0.739 28 H 0.330 0.670 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.034 0.966 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.025 0.975 36 H 0.034 0.966 37 H 0.107 0.893 38 H 0.059 0.941 39 H 0.048 0.952 40 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.822 -2.887 19.278 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.107 3.893 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.070 0.930 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.198 1.198 12 N -0.311 5.311 13 C -0.059 4.059 14 C 0.048 3.952 15 H 0.084 0.916 16 C -0.099 4.099 17 N -0.269 5.269 18 C -0.123 4.123 19 C -0.101 4.101 20 C 0.018 3.982 21 H 0.128 0.872 22 C -0.222 4.222 23 O -0.306 6.306 24 H 0.052 0.948 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.147 0.853 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.043 0.957 36 H 0.052 0.948 37 H 0.125 0.875 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.244 -3.071 18.897 19.610 hybrid contribution -0.396 0.728 -0.799 1.151 sum 3.848 -2.344 18.098 18.651 Atomic orbital electron populations 1.22234 0.99707 0.99351 1.00197 1.18950 0.90181 0.92557 0.87634 0.98314 1.21450 1.30275 1.12374 0.91164 0.93039 1.25715 0.95499 0.95901 1.01856 1.70008 1.38183 1.24235 1.23951 0.85508 0.78748 0.78255 0.78795 1.19904 1.20865 1.19766 1.60549 1.57961 1.09280 1.03292 1.21865 0.98403 0.95391 0.90221 1.22031 0.84339 0.96219 0.92647 0.91645 1.22695 1.01398 0.95204 0.90608 1.62214 1.19088 1.41841 1.03765 1.22449 1.02756 0.95372 0.91733 1.22818 0.88997 0.98848 0.99446 1.22493 0.98274 0.91809 0.85668 0.87211 1.22179 1.01373 0.96761 1.01897 1.88202 1.27221 1.75677 1.39451 0.94816 0.95343 0.91957 0.93011 0.85268 0.93038 0.93764 0.94763 0.88588 0.90489 0.89688 0.95655 0.94819 0.87483 0.92151 0.93301 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.60 8.94 71.98 0.64 -6.96 16 2 C 0.22 11.35 2.57 44.17 0.11 11.46 16 3 H 0.00 -0.06 7.80 -2.39 -0.02 -0.08 16 4 C -0.51 -29.76 8.84 25.60 0.23 -29.53 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.46 5.30 84.66 0.45 0.91 16 7 N -0.92 -54.40 11.32 21.45 0.24 -54.16 16 8 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 12 N -0.68 -30.50 6.18 -495.44 -3.06 -33.57 16 13 C 0.07 2.66 5.15 86.30 0.44 3.11 16 14 C 0.11 3.28 2.58 30.63 0.08 3.36 16 15 H 0.07 2.00 6.50 -2.38 -0.02 1.99 16 16 C 0.03 0.75 4.95 86.31 0.43 1.17 16 17 N -0.54 -11.60 4.36 -921.47 -4.01 -15.61 16 18 C 0.02 0.39 9.60 127.69 1.23 1.61 16 19 C 0.03 0.55 5.08 86.31 0.44 0.99 16 20 C 0.08 1.86 3.92 30.63 0.12 1.98 16 21 H 0.11 2.45 8.14 -2.38 -0.02 2.43 16 22 C -0.16 -3.68 8.89 71.98 0.64 -3.04 16 23 O -0.39 -13.16 10.23 -148.98 -1.52 -14.69 16 24 H 0.03 1.56 8.13 -2.39 -0.02 1.54 16 25 H 0.03 1.20 7.45 -2.39 -0.02 1.19 16 26 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 27 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 28 H 0.33 13.87 8.47 -89.70 -0.76 13.11 16 29 H 0.05 2.10 8.06 -2.39 -0.02 2.08 16 30 H 0.04 1.54 7.44 -2.38 -0.02 1.52 16 31 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.02 0.40 8.14 -2.39 -0.02 0.38 16 36 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.06 1.46 6.13 -2.39 -0.01 1.44 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -64.55 312.36 -1.29 -65.84 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: 0.24 Total: 19.84 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 4.81 Total: -14.93 kcal Atomic # 7 Polarization: -96.50 SS G_CDS: -6.83 Total: -103.34 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -1.52 Total: -14.69 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.55 -1.29 -65.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697296474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.546 kcal (2) G-P(sol) polarization free energy of solvation -64.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds