Wall clock time and date at job start Mon Mar 30 2020 04:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46840 * 2 1 4 4 C 1.50705 * 109.46736 * 239.99849 * 2 1 3 5 5 H 1.08001 * 119.99779 * 239.99833 * 4 2 1 6 6 C 1.37879 * 119.99869 * 60.00547 * 4 2 1 7 7 N 1.31509 * 120.00186 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99620 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47205 * 89.99848 * 8 6 4 10 10 H 1.48502 * 109.47185 * 209.99833 * 8 6 4 11 11 H 1.48501 * 109.47381 * 330.00031 * 8 6 4 12 12 N 1.46896 * 109.46610 * 119.99966 * 2 1 3 13 13 C 1.46900 * 110.99973 * 274.99616 * 12 2 1 14 14 C 1.53002 * 109.46790 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.51132 * 59.91506 * 14 13 12 16 16 C 1.53098 * 109.50461 * 180.02562 * 14 13 12 17 17 N 1.47012 * 109.25866 * 176.78268 * 16 14 13 18 18 C 1.46903 * 110.99957 * 177.61072 * 17 16 14 19 19 C 1.47016 * 110.75275 * 301.38128 * 17 16 14 20 20 C 1.53102 * 109.25606 * 58.61648 * 19 17 16 21 21 H 1.09004 * 109.50469 * 63.08583 * 20 19 17 22 22 C 1.52995 * 109.50569 * 183.21411 * 20 19 17 23 23 O 1.43014 * 109.50500 * 299.78189 * 14 13 12 24 24 H 1.09009 * 109.46987 * 60.00007 * 1 2 3 25 25 H 1.08993 * 109.47309 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47027 * 300.00282 * 1 2 3 27 27 H 0.96995 * 120.00049 * 179.97438 * 7 6 4 28 28 H 1.00902 * 111.00179 * 38.95459 * 12 2 1 29 29 H 1.08992 * 109.47022 * 60.00588 * 13 12 2 30 30 H 1.08999 * 109.47212 * 300.00073 * 13 12 2 31 31 H 1.09003 * 109.50516 * 56.84554 * 16 14 13 32 32 H 1.08997 * 109.54156 * 296.74088 * 16 14 13 33 33 H 1.09006 * 109.46788 * 179.68149 * 18 17 16 34 34 H 1.08999 * 109.46994 * 299.67807 * 18 17 16 35 35 H 1.09000 * 109.47426 * 59.68249 * 18 17 16 36 36 H 1.08999 * 109.50576 * 178.54625 * 19 17 16 37 37 H 1.09000 * 109.51010 * 298.68685 * 19 17 16 38 38 H 1.08997 * 109.47399 * 60.00622 * 22 20 19 39 39 H 1.09009 * 109.47110 * 179.97438 * 22 20 19 40 40 H 1.08995 * 109.47355 * 299.99791 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1121 11 1 3.6307 -1.7568 -3.7120 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5961 -0.5329 3.5742 15 1 3.5909 -0.9280 3.3684 16 6 2.6613 0.4199 4.7707 17 7 3.0814 -0.3286 5.9643 18 6 3.2116 0.5620 7.1253 19 6 2.1466 -1.4278 6.2457 20 6 2.0865 -2.3621 5.0343 21 1 3.0666 -2.8106 4.8716 22 6 1.0557 -3.4635 5.2893 23 8 1.7067 -1.6109 3.8781 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7089 1.1613 -3.4844 28 1 1.4494 -1.4979 1.4100 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0462 2.1182 31 1 1.6773 0.8564 4.9424 32 1 3.3806 1.2129 4.5665 33 1 3.5179 -0.0184 7.9957 34 1 3.9608 1.3253 6.9155 35 1 2.2526 1.0396 7.3263 36 1 2.4907 -1.9840 7.1176 37 1 1.1544 -1.0209 6.4409 38 1 0.0758 -3.0140 5.4498 39 1 1.0130 -4.1282 4.4263 40 1 1.3434 -4.0330 6.1730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697296475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:01 Heat of formation + Delta-G solvation = -44.501292 kcal Electronic energy + Delta-G solvation = -18215.197668 eV Core-core repulsion = 15450.735211 eV Total energy + Delta-G solvation = -2764.462457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.71079 -36.16761 -35.49324 -33.40507 -31.92598 -29.86568 -28.00321 -27.11738 -25.16068 -24.75312 -22.47661 -21.41392 -20.33696 -20.01256 -16.46359 -16.35408 -15.95335 -15.56479 -15.06458 -14.80778 -14.53723 -13.77608 -13.54522 -13.17332 -12.90101 -12.64186 -12.40619 -12.34664 -12.19470 -11.81382 -11.56590 -11.42631 -11.13787 -10.99551 -10.83872 -10.71997 -10.37994 -10.32222 -10.06765 -9.74369 -9.38629 -8.91017 -8.51288 -8.29958 -7.12084 -5.92014 -3.94741 3.37342 3.43215 3.48457 3.69813 3.84368 4.49452 4.70248 4.87694 4.92416 5.14227 5.21053 5.28189 5.34222 5.39495 5.46466 5.48891 5.56697 5.61363 5.65174 5.68135 5.82902 5.95418 6.04136 6.12654 6.34396 6.43674 6.77668 6.81568 6.82596 6.94217 7.18930 7.43434 7.47908 7.82422 7.96490 8.35586 8.66394 8.72198 9.12952 9.70377 11.15165 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.037586 B = 0.004828 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.782055 B = 5798.157848 C = 6080.476603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.210 3.790 3 H 0.032 0.968 4 C -0.492 4.492 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.681 5.681 13 C 0.071 3.929 14 C 0.099 3.901 15 H 0.073 0.927 16 C 0.024 3.976 17 N -0.543 5.543 18 C 0.025 3.975 19 C 0.024 3.976 20 C 0.090 3.910 21 H 0.065 0.935 22 C -0.143 4.143 23 O -0.373 6.373 24 H 0.087 0.913 25 H 0.027 0.973 26 H 0.004 0.996 27 H 0.259 0.741 28 H 0.334 0.666 29 H 0.023 0.977 30 H 0.077 0.923 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.025 0.975 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -2.733 18.308 18.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.050 0.950 4 C -0.531 4.531 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.311 5.311 13 C -0.060 4.060 14 C 0.041 3.959 15 H 0.091 0.909 16 C -0.105 4.105 17 N -0.267 5.267 18 C -0.123 4.123 19 C -0.105 4.105 20 C 0.031 3.969 21 H 0.083 0.917 22 C -0.201 4.201 23 O -0.292 6.292 24 H 0.106 0.894 25 H 0.047 0.953 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.151 0.849 29 H 0.041 0.959 30 H 0.095 0.905 31 H 0.059 0.941 32 H 0.104 0.896 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.043 0.957 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 2.627 -2.769 17.793 18.197 hybrid contribution -1.302 0.251 -0.222 1.344 sum 1.325 -2.518 17.570 17.799 Atomic orbital electron populations 1.22414 1.00757 0.99216 1.00292 1.19179 0.89608 0.94325 0.86643 0.95045 1.21178 1.29988 1.12316 0.89605 0.91942 1.24952 0.95417 0.95224 0.99016 1.69887 1.37522 1.23290 1.23224 0.86510 0.79249 0.79216 0.82478 1.20884 1.21440 1.19873 1.60767 1.58354 1.09102 1.02865 1.21856 0.98932 0.95465 0.89699 1.22295 0.94351 0.86618 0.92681 0.90876 1.22833 0.99818 0.96975 0.90868 1.62196 1.48510 1.11597 1.04434 1.22372 1.00331 0.96561 0.93023 1.22857 0.94689 0.93719 0.99207 1.22067 0.98581 0.91417 0.84814 0.91682 1.21729 0.98813 0.97423 1.02141 1.88014 1.51249 1.44675 1.45279 0.89392 0.95339 0.97709 0.93163 0.84862 0.95872 0.90488 0.94075 0.89551 0.91416 0.91142 0.95675 0.90074 0.94162 0.92078 0.91225 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.21 8.94 37.16 0.33 -3.87 16 2 C 0.21 5.47 2.57 -68.86 -0.18 5.29 16 3 H 0.03 0.89 7.80 -51.93 -0.40 0.48 16 4 C -0.49 -14.00 8.84 -34.44 -0.30 -14.30 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.44 16 7 N -0.90 -26.22 11.32 55.43 0.63 -25.59 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 12 N -0.68 -15.26 6.23 -107.95 -0.67 -15.93 16 13 C 0.07 1.33 5.22 -3.82 -0.02 1.31 16 14 C 0.10 1.58 3.08 -26.68 -0.08 1.50 16 15 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 16 C 0.02 0.32 4.95 -3.71 -0.02 0.30 16 17 N -0.54 -6.63 4.99 -242.59 -1.21 -7.84 16 18 C 0.03 0.24 9.61 60.07 0.58 0.82 16 19 C 0.02 0.27 4.95 -3.71 -0.02 0.25 16 20 C 0.09 1.15 3.43 -26.68 -0.09 1.05 16 21 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.14 -1.51 9.57 37.16 0.36 -1.15 16 23 O -0.37 -6.09 9.46 -35.23 -0.33 -6.42 16 24 H 0.09 2.42 6.07 -51.92 -0.32 2.10 16 25 H 0.03 0.69 8.13 -51.93 -0.42 0.27 16 26 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 27 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.33 7.46 7.87 -39.29 -0.31 7.15 16 29 H 0.02 0.45 7.43 -51.93 -0.39 0.06 16 30 H 0.08 1.41 8.06 -51.93 -0.42 0.99 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.77 8.14 -51.92 -0.42 0.34 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 315.93 15.07 4.76 4.76 Total: -1.00 -29.84 315.93 -8.65 -38.49 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -7.26 Total: 3.02 kcal Atomic # 6 Polarization: -7.83 SS G_CDS: 0.46 Total: -7.37 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -1.25 Total: -49.36 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.33 Total: -6.42 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.84 -8.65 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697296475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.015 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds