Wall clock time and date at job start Mon Mar 30 2020 04:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08995 * 109.46840 * 2 1 4 4 C 1.50705 * 109.46736 * 239.99849 * 2 1 3 5 5 H 1.08001 * 119.99779 * 239.99833 * 4 2 1 6 6 C 1.37879 * 119.99869 * 60.00547 * 4 2 1 7 7 N 1.31509 * 120.00186 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99620 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47205 * 89.99848 * 8 6 4 10 10 H 1.48502 * 109.47185 * 209.99833 * 8 6 4 11 11 H 1.48501 * 109.47381 * 330.00031 * 8 6 4 12 12 N 1.46896 * 109.46610 * 119.99966 * 2 1 3 13 13 C 1.46900 * 110.99973 * 274.99616 * 12 2 1 14 14 C 1.53002 * 109.46790 * 180.02562 * 13 12 2 15 15 H 1.08998 * 109.51132 * 59.91506 * 14 13 12 16 16 C 1.53098 * 109.50461 * 180.02562 * 14 13 12 17 17 N 1.47012 * 109.25866 * 176.78268 * 16 14 13 18 18 C 1.46903 * 110.99957 * 177.61072 * 17 16 14 19 19 C 1.47016 * 110.75275 * 301.38128 * 17 16 14 20 20 C 1.53102 * 109.25606 * 58.61648 * 19 17 16 21 21 H 1.09004 * 109.50469 * 63.08583 * 20 19 17 22 22 C 1.52995 * 109.50569 * 183.21411 * 20 19 17 23 23 O 1.43014 * 109.50500 * 299.78189 * 14 13 12 24 24 H 1.09009 * 109.46987 * 60.00007 * 1 2 3 25 25 H 1.08993 * 109.47309 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47027 * 300.00282 * 1 2 3 27 27 H 0.96995 * 120.00049 * 179.97438 * 7 6 4 28 28 H 1.00902 * 111.00179 * 38.95459 * 12 2 1 29 29 H 1.08992 * 109.47022 * 60.00588 * 13 12 2 30 30 H 1.08999 * 109.47212 * 300.00073 * 13 12 2 31 31 H 1.09003 * 109.50516 * 56.84554 * 16 14 13 32 32 H 1.08997 * 109.54156 * 296.74088 * 16 14 13 33 33 H 1.09006 * 109.46788 * 179.68149 * 18 17 16 34 34 H 1.08999 * 109.46994 * 299.67807 * 18 17 16 35 35 H 1.09000 * 109.47426 * 59.68249 * 18 17 16 36 36 H 1.08999 * 109.50576 * 178.54625 * 19 17 16 37 37 H 1.09000 * 109.51010 * 298.68685 * 19 17 16 38 38 H 1.08997 * 109.47399 * 60.00622 * 22 20 19 39 39 H 1.09009 * 109.47110 * 179.97438 * 22 20 19 40 40 H 1.08995 * 109.47355 * 299.99791 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9429 0.8297 -2.6034 8 14 2.3224 -1.1196 -4.0079 9 1 1.3447 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1121 11 1 3.6307 -1.7568 -3.7120 12 7 2.0196 -0.6925 1.1994 13 6 2.0824 0.2226 2.3469 14 6 2.5961 -0.5329 3.5742 15 1 3.5909 -0.9280 3.3684 16 6 2.6613 0.4199 4.7707 17 7 3.0814 -0.3286 5.9643 18 6 3.2116 0.5620 7.1253 19 6 2.1466 -1.4278 6.2457 20 6 2.0865 -2.3621 5.0343 21 1 3.0666 -2.8106 4.8716 22 6 1.0557 -3.4635 5.2893 23 8 1.7067 -1.6109 3.8781 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 0.7089 1.1613 -3.4844 28 1 1.4494 -1.4979 1.4100 29 1 1.0871 0.6163 2.5525 30 1 2.7589 1.0462 2.1182 31 1 1.6773 0.8564 4.9424 32 1 3.3806 1.2129 4.5665 33 1 3.5179 -0.0184 7.9957 34 1 3.9608 1.3253 6.9155 35 1 2.2526 1.0396 7.3263 36 1 2.4907 -1.9840 7.1176 37 1 1.1544 -1.0209 6.4409 38 1 0.0758 -3.0140 5.4498 39 1 1.0130 -4.1282 4.4263 40 1 1.3434 -4.0330 6.1730 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697296475.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:00 Heat of formation + Delta-G solvation = -66.285826 kcal Electronic energy + Delta-G solvation = -18216.142317 eV Core-core repulsion = 15450.735211 eV Total energy + Delta-G solvation = -2765.407106 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.80834 -37.85843 -36.63603 -34.99887 -33.56819 -31.26479 -29.52729 -27.97664 -27.24941 -26.19391 -23.48040 -22.73220 -22.07023 -21.36109 -18.40182 -17.61578 -17.07705 -16.75344 -16.67623 -16.18911 -15.82670 -15.10327 -15.01690 -14.74338 -14.50112 -13.74157 -13.53113 -13.42904 -13.38844 -13.10759 -12.92411 -12.84979 -12.73998 -12.69417 -12.44329 -12.18123 -12.14325 -11.99148 -11.76408 -11.43452 -10.99621 -10.51136 -10.47534 -9.44369 -8.96326 -8.08463 -6.19657 1.44565 1.44781 1.56540 2.45473 2.69718 2.80359 3.19678 3.52089 3.86214 3.95436 4.06395 4.12415 4.20435 4.36804 4.43426 4.50887 4.58550 4.59858 4.64499 4.70855 4.72331 4.77094 4.88439 4.95736 4.97402 5.02694 5.09744 5.15484 5.28516 5.40967 5.69231 5.81150 5.86838 5.97080 6.26953 6.32442 6.66050 6.82543 6.95085 7.50234 8.97401 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.037586 B = 0.004828 C = 0.004604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.782055 B = 5798.157848 C = 6080.476603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.214 3.786 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.963 3.037 9 H -0.276 1.276 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.683 5.683 13 C 0.074 3.926 14 C 0.108 3.892 15 H 0.062 0.938 16 C 0.032 3.968 17 N -0.554 5.554 18 C 0.025 3.975 19 C 0.027 3.973 20 C 0.081 3.919 21 H 0.060 0.940 22 C -0.138 4.138 23 O -0.397 6.397 24 H 0.063 0.937 25 H 0.028 0.972 26 H 0.021 0.979 27 H 0.261 0.739 28 H 0.334 0.666 29 H 0.019 0.981 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.027 0.973 36 H 0.107 0.893 37 H 0.037 0.963 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.155 -3.422 19.597 20.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.106 3.894 3 H 0.022 0.978 4 C -0.554 4.554 5 H 0.072 0.928 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.195 1.195 12 N -0.313 5.313 13 C -0.057 4.057 14 C 0.050 3.950 15 H 0.080 0.920 16 C -0.097 4.097 17 N -0.278 5.278 18 C -0.122 4.122 19 C -0.101 4.101 20 C 0.023 3.977 21 H 0.079 0.921 22 C -0.196 4.196 23 O -0.317 6.317 24 H 0.082 0.918 25 H 0.047 0.953 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.037 0.963 30 H 0.095 0.905 31 H 0.055 0.945 32 H 0.114 0.886 33 H 0.104 0.896 34 H 0.095 0.905 35 H 0.045 0.955 36 H 0.125 0.875 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 3.056 -3.461 19.110 19.660 hybrid contribution -1.430 0.460 -0.558 1.602 sum 1.626 -3.001 18.553 18.864 Atomic orbital electron populations 1.22220 1.00184 0.99031 0.99869 1.18970 0.89950 0.92835 0.87670 0.97754 1.21442 1.30462 1.12440 0.91061 0.92839 1.25731 0.95439 0.95875 1.01907 1.70007 1.38072 1.24278 1.24009 0.85485 0.78779 0.78197 0.78702 1.20127 1.20807 1.19512 1.60651 1.57928 1.09536 1.03211 1.21881 0.98857 0.95283 0.89656 1.22040 0.93317 0.87072 0.92610 0.92028 1.22676 0.99969 0.96471 0.90612 1.62213 1.48601 1.12169 1.04864 1.22448 1.00722 0.96618 0.92460 1.22863 0.94587 0.93415 0.99214 1.22341 0.99060 0.91970 0.84323 0.92149 1.21736 0.98095 0.96697 1.03036 1.87975 1.51550 1.45055 1.47145 0.91796 0.95265 0.95999 0.92972 0.84849 0.96289 0.90460 0.94527 0.88598 0.89632 0.90511 0.95453 0.87508 0.94485 0.92331 0.92191 0.88373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.80 8.94 71.98 0.64 -7.16 16 2 C 0.21 11.37 2.57 44.17 0.11 11.48 16 3 H 0.00 0.26 7.80 -2.39 -0.02 0.24 16 4 C -0.52 -29.70 8.84 25.60 0.23 -29.48 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.48 5.30 84.66 0.45 0.93 16 7 N -0.92 -54.31 11.32 21.45 0.24 -54.07 16 8 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 12 N -0.68 -31.07 6.23 -495.45 -3.09 -34.16 16 13 C 0.07 2.77 5.22 86.30 0.45 3.22 16 14 C 0.11 3.43 3.08 30.63 0.09 3.52 16 15 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 16 C 0.03 0.81 4.95 86.31 0.43 1.24 16 17 N -0.55 -12.37 4.99 -921.41 -4.59 -16.97 16 18 C 0.03 0.41 9.61 127.69 1.23 1.64 16 19 C 0.03 0.56 4.95 86.32 0.43 0.98 16 20 C 0.08 1.96 3.43 30.63 0.10 2.06 16 21 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 22 C -0.14 -2.67 9.57 71.98 0.69 -1.98 16 23 O -0.40 -12.82 9.46 -148.98 -1.41 -14.22 16 24 H 0.06 3.56 6.07 -2.38 -0.01 3.55 16 25 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 26 H 0.02 0.98 7.45 -2.39 -0.02 0.97 16 27 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 28 H 0.33 15.11 7.87 -89.69 -0.71 14.40 16 29 H 0.02 0.73 7.43 -2.39 -0.02 0.71 16 30 H 0.08 2.87 8.06 -2.39 -0.02 2.85 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.08 1.10 8.14 -2.38 -0.02 1.09 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -63.47 315.93 -1.69 -65.16 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: 0.28 Total: 20.85 kcal Atomic # 6 Polarization: -18.39 SS G_CDS: 4.85 Total: -13.54 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -7.44 Total: -105.19 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -1.41 Total: -14.22 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -63.47 -1.69 -65.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697296475.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.127 kcal (2) G-P(sol) polarization free energy of solvation -63.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds