Wall clock time and date at job start Mon Mar 30 2020 04:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46707 * 2 1 4 4 C 1.50696 * 109.47182 * 239.99810 * 2 1 3 5 5 H 1.08006 * 120.00098 * 239.99667 * 4 2 1 6 6 C 1.37876 * 120.00238 * 60.00018 * 4 2 1 7 7 N 1.31513 * 119.99982 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00082 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46652 * 120.00248 * 8 6 4 11 11 H 1.48497 * 109.47570 * 239.99694 * 8 6 4 12 12 N 1.46901 * 109.46968 * 119.99430 * 2 1 3 13 13 C 1.46896 * 111.00371 * 275.00216 * 12 2 1 14 14 C 1.52998 * 109.47166 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.50736 * 305.08665 * 14 13 12 16 16 C 1.53098 * 109.50745 * 184.99887 * 14 13 12 17 17 N 1.47008 * 109.25797 * 183.17399 * 16 14 13 18 18 C 1.46904 * 110.99810 * 182.39496 * 17 16 14 19 19 C 1.47011 * 110.75515 * 58.61988 * 17 16 14 20 20 C 1.53097 * 109.25762 * 301.38252 * 19 17 16 21 21 H 1.09002 * 109.50402 * 296.87141 * 20 19 17 22 22 C 1.52997 * 109.50975 * 176.78261 * 20 19 17 23 23 O 1.43013 * 109.54001 * 65.19888 * 14 13 12 24 24 H 1.09008 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47489 * 300.00158 * 1 2 3 26 26 H 1.09000 * 109.47076 * 60.00434 * 1 2 3 27 27 H 0.96997 * 120.00378 * 180.02562 * 7 6 4 28 28 H 1.00903 * 110.99677 * 151.04675 * 12 2 1 29 29 H 1.09000 * 109.47184 * 60.00124 * 13 12 2 30 30 H 1.09000 * 109.47214 * 300.00476 * 13 12 2 31 31 H 1.09003 * 109.50207 * 63.23965 * 16 14 13 32 32 H 1.09000 * 109.50927 * 303.11168 * 16 14 13 33 33 H 1.08997 * 109.47096 * 292.40870 * 18 17 16 34 34 H 1.08998 * 109.47076 * 52.41491 * 18 17 16 35 35 H 1.09000 * 109.47062 * 172.41236 * 18 17 16 36 36 H 1.08997 * 109.50946 * 181.45007 * 19 17 16 37 37 H 1.09000 * 109.50440 * 61.31502 * 19 17 16 38 38 H 1.09002 * 109.47153 * 59.99880 * 22 20 19 39 39 H 1.09001 * 109.46832 * 300.00071 * 22 20 19 40 40 H 1.09004 * 109.47261 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3226 -1.1197 -4.0079 9 1 3.1474 -2.2864 -3.6036 10 1 1.1678 -1.5867 -4.8164 11 1 3.1473 -0.1860 -4.8161 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5949 -0.5330 3.5745 15 1 1.9703 -1.4089 3.7498 16 6 2.5429 0.3851 4.7986 17 7 3.1070 -0.3206 5.9583 18 6 3.0240 0.5067 7.1694 19 6 4.4939 -0.7308 5.6945 20 6 4.5264 -1.6377 4.4615 21 1 3.9586 -2.5461 4.6628 22 6 5.9756 -2.0031 4.1341 23 8 3.9458 -0.9465 3.3522 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7090 1.1613 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 1.0870 0.6164 2.5525 30 1 2.7587 1.0463 2.1182 31 1 1.5079 0.6568 5.0060 32 1 3.1242 1.2861 4.6027 33 1 3.6888 1.3647 7.0696 34 1 1.9995 0.8543 7.3024 35 1 3.3221 -0.0851 8.0348 36 1 4.8830 -1.2736 6.5559 37 1 5.1063 0.1524 5.5130 38 1 6.4187 -2.5264 4.9814 39 1 6.5425 -1.0944 3.9314 40 1 5.9981 -2.6484 3.2559 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697296476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:05 Heat of formation + Delta-G solvation = -45.648118 kcal Electronic energy + Delta-G solvation = -18195.394638 eV Core-core repulsion = 15430.882451 eV Total energy + Delta-G solvation = -2764.512188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.70154 -36.10235 -35.47397 -33.41099 -31.92556 -29.82679 -28.07482 -27.12267 -25.39452 -24.67411 -22.47776 -21.43334 -20.32685 -19.62025 -16.51733 -16.49183 -15.97579 -15.50371 -15.03443 -14.84190 -14.52903 -13.80747 -13.60090 -13.23283 -12.85221 -12.68178 -12.39721 -12.34444 -12.18523 -11.80275 -11.64782 -11.39128 -11.11068 -10.95298 -10.75193 -10.63512 -10.49500 -10.13628 -10.07343 -9.78104 -9.38148 -8.75227 -8.50787 -8.42677 -7.18592 -5.97733 -4.03279 3.32450 3.39954 3.45137 3.70541 3.84959 4.44783 4.70677 4.88073 4.93217 5.15211 5.21723 5.27517 5.33814 5.35828 5.47270 5.49570 5.57996 5.61775 5.65510 5.68832 5.84033 5.95742 6.05721 6.13930 6.33385 6.46045 6.81782 6.82753 6.93035 7.18843 7.28590 7.47248 7.56091 7.84487 7.96658 8.33527 8.47826 8.76002 9.08600 9.62400 11.08877 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034670 B = 0.005084 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.426053 B = 5506.192749 C = 6153.430645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.210 3.790 3 H 0.000 1.000 4 C -0.514 4.514 5 H 0.060 0.940 6 C 0.060 3.940 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.686 5.686 13 C 0.071 3.929 14 C 0.098 3.902 15 H 0.073 0.927 16 C 0.024 3.976 17 N -0.543 5.543 18 C 0.025 3.975 19 C 0.024 3.976 20 C 0.089 3.911 21 H 0.065 0.935 22 C -0.144 4.144 23 O -0.373 6.373 24 H 0.031 0.969 25 H 0.003 0.997 26 H 0.080 0.920 27 H 0.259 0.741 28 H 0.339 0.661 29 H 0.076 0.924 30 H 0.025 0.975 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.025 0.975 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.041 0.959 38 H 0.068 0.932 39 H 0.060 0.940 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.010 -1.508 17.096 18.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.102 3.898 3 H 0.017 0.983 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.317 5.317 13 C -0.059 4.059 14 C 0.040 3.960 15 H 0.091 0.909 16 C -0.105 4.105 17 N -0.268 5.268 18 C -0.123 4.123 19 C -0.105 4.105 20 C 0.031 3.969 21 H 0.083 0.917 22 C -0.201 4.201 23 O -0.292 6.292 24 H 0.051 0.949 25 H 0.022 0.978 26 H 0.099 0.901 27 H 0.069 0.931 28 H 0.156 0.844 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.043 0.957 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.124 -2.018 17.026 17.895 hybrid contribution 1.347 0.941 -0.875 1.861 sum 6.472 -1.077 16.152 17.433 Atomic orbital electron populations 1.21715 0.97948 0.99331 0.99259 1.19114 0.92540 0.92351 0.85761 0.98262 1.21316 1.31106 1.12412 0.90426 0.92135 1.24921 0.95113 0.95023 0.99035 1.69909 1.36922 1.23005 1.23255 0.86467 0.78587 0.79638 0.82871 1.19721 1.21017 1.21150 1.60712 1.32773 1.32504 1.05754 1.21853 0.99209 0.94138 0.90729 1.22292 0.83324 0.96893 0.93475 0.90878 1.22833 1.00681 0.96092 0.90892 1.62195 1.18958 1.41777 1.03822 1.22372 1.01723 0.95666 0.92533 1.22855 0.89078 0.99311 0.99209 1.22067 0.95027 0.94255 0.85542 0.91708 1.21732 0.93857 1.02180 1.02354 1.88034 1.27500 1.75605 1.38088 0.94944 0.97793 0.90149 0.93064 0.84353 0.90560 0.95707 0.89572 0.94049 0.95657 0.91210 0.91360 0.90065 0.94115 0.91354 0.92044 0.91214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.17 9.19 37.16 0.34 -2.82 16 2 C 0.21 5.51 2.60 -68.87 -0.18 5.33 16 3 H 0.00 -0.01 7.80 -51.93 -0.40 -0.41 16 4 C -0.51 -14.55 8.59 -34.44 -0.30 -14.84 16 5 H 0.06 1.70 7.62 -52.48 -0.40 1.30 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.97 11.32 55.43 0.63 -25.34 16 8 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 9 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 N -0.69 -15.48 6.30 -107.96 -0.68 -16.16 16 13 C 0.07 1.35 5.19 -3.83 -0.02 1.33 16 14 C 0.10 1.59 3.04 -26.68 -0.08 1.51 16 15 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 16 C 0.02 0.32 4.94 -3.71 -0.02 0.30 16 17 N -0.54 -6.67 4.99 -242.60 -1.21 -7.88 16 18 C 0.03 0.24 9.63 60.07 0.58 0.82 16 19 C 0.02 0.27 4.94 -3.71 -0.02 0.26 16 20 C 0.09 1.16 3.43 -26.68 -0.09 1.07 16 21 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 22 C -0.14 -1.54 9.57 37.16 0.36 -1.19 16 23 O -0.37 -6.20 9.64 -35.23 -0.34 -6.54 16 24 H 0.03 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 26 H 0.08 2.22 6.07 -51.93 -0.32 1.90 16 27 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.34 7.78 7.79 -39.29 -0.31 7.48 16 29 H 0.08 1.40 7.44 -51.93 -0.39 1.01 16 30 H 0.02 0.49 8.06 -51.93 -0.42 0.07 16 31 H 0.09 1.07 8.11 -51.93 -0.42 0.65 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.62 8.08 -51.93 -0.42 0.20 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 315.82 15.07 4.76 4.76 Total: -1.00 -29.85 315.82 -8.63 -38.48 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.24 Total: 2.63 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 0.48 Total: -6.62 kcal Atomic # 7 Polarization: -48.12 SS G_CDS: -1.26 Total: -49.38 kcal Atomic # 8 Polarization: -6.20 SS G_CDS: -0.34 Total: -6.54 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.85 -8.63 -38.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697296476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.171 kcal (2) G-P(sol) polarization free energy of solvation -29.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds