Wall clock time and date at job start Mon Mar 30 2020 04:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46707 * 2 1 4 4 C 1.50696 * 109.47182 * 239.99810 * 2 1 3 5 5 H 1.08006 * 120.00098 * 239.99667 * 4 2 1 6 6 C 1.37876 * 120.00238 * 60.00018 * 4 2 1 7 7 N 1.31513 * 119.99982 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00082 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47196 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46652 * 120.00248 * 8 6 4 11 11 H 1.48497 * 109.47570 * 239.99694 * 8 6 4 12 12 N 1.46901 * 109.46968 * 119.99430 * 2 1 3 13 13 C 1.46896 * 111.00371 * 275.00216 * 12 2 1 14 14 C 1.52998 * 109.47166 * 179.97438 * 13 12 2 15 15 H 1.09002 * 109.50736 * 305.08665 * 14 13 12 16 16 C 1.53098 * 109.50745 * 184.99887 * 14 13 12 17 17 N 1.47008 * 109.25797 * 183.17399 * 16 14 13 18 18 C 1.46904 * 110.99810 * 182.39496 * 17 16 14 19 19 C 1.47011 * 110.75515 * 58.61988 * 17 16 14 20 20 C 1.53097 * 109.25762 * 301.38252 * 19 17 16 21 21 H 1.09002 * 109.50402 * 296.87141 * 20 19 17 22 22 C 1.52997 * 109.50975 * 176.78261 * 20 19 17 23 23 O 1.43013 * 109.54001 * 65.19888 * 14 13 12 24 24 H 1.09008 * 109.46926 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47489 * 300.00158 * 1 2 3 26 26 H 1.09000 * 109.47076 * 60.00434 * 1 2 3 27 27 H 0.96997 * 120.00378 * 180.02562 * 7 6 4 28 28 H 1.00903 * 110.99677 * 151.04675 * 12 2 1 29 29 H 1.09000 * 109.47184 * 60.00124 * 13 12 2 30 30 H 1.09000 * 109.47214 * 300.00476 * 13 12 2 31 31 H 1.09003 * 109.50207 * 63.23965 * 16 14 13 32 32 H 1.09000 * 109.50927 * 303.11168 * 16 14 13 33 33 H 1.08997 * 109.47096 * 292.40870 * 18 17 16 34 34 H 1.08998 * 109.47076 * 52.41491 * 18 17 16 35 35 H 1.09000 * 109.47062 * 172.41236 * 18 17 16 36 36 H 1.08997 * 109.50946 * 181.45007 * 19 17 16 37 37 H 1.09000 * 109.50440 * 61.31502 * 19 17 16 38 38 H 1.09002 * 109.47153 * 59.99880 * 22 20 19 39 39 H 1.09001 * 109.46832 * 300.00071 * 22 20 19 40 40 H 1.09004 * 109.47261 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6035 8 14 2.3226 -1.1197 -4.0079 9 1 3.1474 -2.2864 -3.6036 10 1 1.1678 -1.5867 -4.8164 11 1 3.1473 -0.1860 -4.8161 12 7 2.0196 -0.6924 1.1995 13 6 2.0824 0.2227 2.3469 14 6 2.5949 -0.5330 3.5745 15 1 1.9703 -1.4089 3.7498 16 6 2.5429 0.3851 4.7986 17 7 3.1070 -0.3206 5.9583 18 6 3.0240 0.5067 7.1694 19 6 4.4939 -0.7308 5.6945 20 6 4.5264 -1.6377 4.4615 21 1 3.9586 -2.5461 4.6628 22 6 5.9756 -2.0031 4.1341 23 8 3.9458 -0.9465 3.3522 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7090 1.1613 -3.4844 28 1 2.9173 -1.1204 1.0288 29 1 1.0870 0.6164 2.5525 30 1 2.7587 1.0463 2.1182 31 1 1.5079 0.6568 5.0060 32 1 3.1242 1.2861 4.6027 33 1 3.6888 1.3647 7.0696 34 1 1.9995 0.8543 7.3024 35 1 3.3221 -0.0851 8.0348 36 1 4.8830 -1.2736 6.5559 37 1 5.1063 0.1524 5.5130 38 1 6.4187 -2.5264 4.9814 39 1 6.5425 -1.0944 3.9314 40 1 5.9981 -2.6484 3.2559 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697296476.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:05 Heat of formation + Delta-G solvation = -67.571689 kcal Electronic energy + Delta-G solvation = -18196.345316 eV Core-core repulsion = 15430.882451 eV Total energy + Delta-G solvation = -2765.462865 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.81162 -37.79296 -36.64521 -35.02652 -33.55288 -31.26196 -29.63399 -27.99387 -27.38285 -26.20787 -23.49032 -22.77952 -21.73882 -21.30395 -18.56939 -17.69151 -17.06719 -16.83851 -16.55921 -16.11589 -15.88619 -15.41544 -14.92551 -14.77639 -14.46779 -13.72354 -13.64721 -13.42788 -13.32145 -13.10098 -12.92830 -12.77380 -12.73054 -12.64284 -12.41934 -12.20018 -12.16100 -11.98546 -11.77212 -11.37330 -10.87845 -10.57958 -10.51746 -9.44915 -9.07830 -8.13588 -6.27588 1.41385 1.42679 1.55381 2.41798 2.69420 2.79543 3.14813 3.50572 3.85196 3.95058 4.04841 4.11345 4.19922 4.37639 4.42343 4.50437 4.57926 4.59324 4.64496 4.71083 4.72576 4.84087 4.95867 4.97505 5.02313 5.07954 5.13305 5.21336 5.27633 5.47441 5.66696 5.85672 5.86442 5.96887 6.22403 6.31699 6.46969 6.76257 6.98336 7.42649 8.92526 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.034670 B = 0.005084 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.426053 B = 5506.192749 C = 6153.430645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.213 3.787 3 H -0.033 1.033 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.279 1.279 12 N -0.683 5.683 13 C 0.074 3.926 14 C 0.107 3.893 15 H 0.065 0.935 16 C 0.031 3.969 17 N -0.553 5.553 18 C 0.025 3.975 19 C 0.027 3.973 20 C 0.081 3.919 21 H 0.062 0.938 22 C -0.139 4.139 23 O -0.400 6.400 24 H 0.028 0.972 25 H 0.025 0.975 26 H 0.057 0.943 27 H 0.263 0.737 28 H 0.334 0.666 29 H 0.083 0.917 30 H 0.012 0.988 31 H 0.098 0.902 32 H 0.035 0.965 33 H 0.027 0.973 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.036 0.964 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.639 -2.195 18.350 19.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.105 3.895 3 H -0.015 1.015 4 C -0.576 4.576 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.205 1.205 12 N -0.313 5.313 13 C -0.057 4.057 14 C 0.049 3.951 15 H 0.083 0.917 16 C -0.098 4.098 17 N -0.278 5.278 18 C -0.123 4.123 19 C -0.101 4.101 20 C 0.023 3.977 21 H 0.080 0.920 22 C -0.196 4.196 23 O -0.320 6.320 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.152 0.848 29 H 0.101 0.899 30 H 0.031 0.969 31 H 0.116 0.884 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.054 0.946 38 H 0.117 0.883 39 H 0.076 0.924 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.756 -2.707 18.310 19.383 hybrid contribution 1.170 1.160 -1.203 2.040 sum 6.926 -1.547 17.107 18.521 Atomic orbital electron populations 1.21533 0.97364 0.98974 0.99199 1.18955 0.92975 0.90661 0.86925 1.01529 1.21602 1.31631 1.12645 0.91716 0.92581 1.25739 0.95137 0.95691 1.02031 1.70027 1.37520 1.24047 1.24148 0.85413 0.78173 0.78560 0.78906 1.19211 1.20322 1.20523 1.60656 1.32449 1.32846 1.05378 1.21898 0.99551 0.93576 0.90647 1.22053 0.83287 0.96689 0.93050 0.91699 1.22683 1.01519 0.95081 0.90471 1.62217 1.19332 1.42226 1.03979 1.22453 1.02392 0.95723 0.91699 1.22859 0.88813 0.99047 0.99351 1.22345 0.95855 0.94172 0.85330 0.91989 1.21744 0.92549 1.02077 1.03251 1.87997 1.27490 1.76236 1.40308 0.95247 0.95623 0.92383 0.92784 0.84840 0.89912 0.96944 0.88399 0.94675 0.95414 0.90504 0.89608 0.87444 0.94564 0.88270 0.92436 0.92246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.19 71.98 0.66 -5.12 16 2 C 0.21 11.44 2.60 44.17 0.11 11.56 16 3 H -0.03 -1.94 7.80 -2.39 -0.02 -1.96 16 4 C -0.54 -30.87 8.59 25.60 0.22 -30.65 16 5 H 0.06 3.19 7.62 -2.91 -0.02 3.17 16 6 C 0.01 0.74 5.30 84.65 0.45 1.19 16 7 N -0.92 -54.02 11.32 21.45 0.24 -53.78 16 8 Si 0.96 44.58 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 N -0.68 -31.31 6.30 -495.47 -3.12 -34.43 16 13 C 0.07 2.81 5.19 86.30 0.45 3.26 16 14 C 0.11 3.44 3.04 30.63 0.09 3.53 16 15 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 16 C 0.03 0.81 4.94 86.32 0.43 1.24 16 17 N -0.55 -12.40 4.99 -921.46 -4.59 -17.00 16 18 C 0.02 0.41 9.63 127.69 1.23 1.64 16 19 C 0.03 0.57 4.94 86.31 0.43 1.00 16 20 C 0.08 1.99 3.43 30.63 0.10 2.10 16 21 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 22 C -0.14 -2.77 9.57 71.98 0.69 -2.08 16 23 O -0.40 -13.27 9.64 -148.98 -1.44 -14.70 16 24 H 0.03 1.47 8.14 -2.38 -0.02 1.45 16 25 H 0.02 1.15 7.45 -2.39 -0.02 1.13 16 26 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 27 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 28 H 0.33 15.73 7.79 -89.69 -0.70 15.03 16 29 H 0.08 3.02 7.44 -2.39 -0.02 3.00 16 30 H 0.01 0.50 8.06 -2.39 -0.02 0.49 16 31 H 0.10 2.27 8.11 -2.39 -0.02 2.25 16 32 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 35 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 Total: -1.00 -63.85 315.82 -1.73 -65.58 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.29 Total: 20.07 kcal Atomic # 6 Polarization: -17.21 SS G_CDS: 4.86 Total: -12.34 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -7.47 Total: -105.21 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: -1.44 Total: -14.70 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.85 -1.73 -65.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697296476.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.989 kcal (2) G-P(sol) polarization free energy of solvation -63.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds