Wall clock time and date at job start Mon Mar 30 2020 04:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46580 * 2 1 4 4 C 1.50703 * 109.47101 * 240.00290 * 2 1 3 5 5 H 1.08002 * 119.99531 * 239.99938 * 4 2 1 6 6 C 1.37876 * 120.00022 * 59.99751 * 4 2 1 7 7 N 1.31509 * 120.00189 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99875 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47213 * 59.99790 * 8 6 4 10 10 H 1.48498 * 109.47272 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47269 * 300.00034 * 8 6 4 12 12 N 1.46896 * 109.47333 * 120.00235 * 2 1 3 13 13 C 1.46905 * 110.99790 * 275.00192 * 12 2 1 14 14 C 1.52999 * 109.47122 * 180.02562 * 13 12 2 15 15 H 1.08997 * 109.54201 * 59.88855 * 14 13 12 16 16 C 1.53102 * 109.50727 * 179.97438 * 14 13 12 17 17 N 1.47016 * 109.25606 * 176.78217 * 16 14 13 18 18 C 1.46902 * 110.99529 * 177.60836 * 17 16 14 19 19 C 1.47014 * 110.75376 * 301.38313 * 17 16 14 20 20 C 1.53096 * 109.25577 * 58.61838 * 19 17 16 21 21 H 1.09006 * 109.50337 * 183.21659 * 20 19 17 22 22 C 1.53000 * 109.50955 * 63.13100 * 20 19 17 23 23 O 1.43016 * 109.50507 * 299.78185 * 14 13 12 24 24 H 1.09003 * 109.47248 * 299.99305 * 1 2 3 25 25 H 1.08998 * 109.47703 * 60.00380 * 1 2 3 26 26 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00335 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00339 * 151.04778 * 12 2 1 29 29 H 1.08997 * 109.47227 * 59.99894 * 13 12 2 30 30 H 1.09006 * 109.47101 * 299.99946 * 13 12 2 31 31 H 1.08999 * 109.50407 * 56.85136 * 16 14 13 32 32 H 1.09000 * 109.50181 * 296.71691 * 16 14 13 33 33 H 1.08995 * 109.47546 * 59.99746 * 18 17 16 34 34 H 1.09001 * 109.47004 * 180.02562 * 18 17 16 35 35 H 1.09005 * 109.47121 * 299.99440 * 18 17 16 36 36 H 1.09004 * 109.50527 * 178.55195 * 19 17 16 37 37 H 1.09002 * 109.50515 * 298.68363 * 19 17 16 38 38 H 1.09001 * 109.47156 * 59.99463 * 22 20 19 39 39 H 1.08996 * 109.46961 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.46888 * 299.99800 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5963 -0.5329 3.5741 15 1 3.5910 -0.9284 3.3687 16 6 2.6626 0.4203 4.7704 17 7 3.0829 -0.3282 5.9640 18 6 3.2142 0.5626 7.1247 19 6 2.1476 -1.4268 6.2460 20 6 2.0865 -2.3614 5.0350 21 1 1.3517 -3.1456 5.2172 22 6 3.4614 -2.9926 4.8067 23 8 1.7071 -1.6110 3.8781 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7080 1.1609 -3.4844 28 1 2.9173 -1.1205 1.0287 29 1 1.0871 0.6163 2.5525 30 1 2.7588 1.0463 2.1182 31 1 1.6790 0.8573 4.9425 32 1 3.3828 1.2123 4.5651 33 1 2.2543 1.0366 7.3294 34 1 3.5265 -0.0166 7.9936 35 1 3.9598 1.3288 6.9122 36 1 2.4919 -1.9830 7.1180 37 1 1.1558 -1.0192 6.4417 38 1 3.7512 -3.5615 5.6901 39 1 3.4171 -3.6581 3.9447 40 1 4.1954 -2.2079 4.6231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697296477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:08 Heat of formation + Delta-G solvation = -40.253049 kcal Electronic energy + Delta-G solvation = -18340.374270 eV Core-core repulsion = 15576.096030 eV Total energy + Delta-G solvation = -2764.278240 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.82597 -36.07628 -35.42104 -33.17791 -31.71385 -29.87777 -28.05725 -27.06742 -25.38676 -24.65466 -23.05918 -21.62525 -19.70254 -19.30310 -16.68892 -16.38495 -15.97294 -15.27861 -15.14347 -14.70700 -14.43026 -13.93363 -13.66069 -13.18361 -12.93341 -12.86867 -12.28893 -12.16407 -11.93761 -11.75426 -11.61719 -11.41100 -11.11581 -10.94982 -10.74862 -10.70465 -10.22097 -10.16865 -10.04618 -9.70992 -9.31616 -8.76685 -8.45631 -8.41845 -7.13665 -5.97623 -4.03707 3.34641 3.38739 3.41971 3.73838 4.00646 4.44206 4.79127 4.87730 4.96600 5.09502 5.26573 5.32296 5.34206 5.37620 5.47251 5.51034 5.62346 5.65752 5.66115 5.74515 5.87222 6.01704 6.09554 6.25479 6.35595 6.51388 6.84264 6.84704 6.96186 7.22835 7.31490 7.52817 7.61340 7.83760 7.96980 8.34375 8.47448 8.75344 9.07533 9.61924 11.08740 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041162 B = 0.004885 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.082114 B = 5730.049032 C = 5991.335445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.517 4.517 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.677 5.677 13 C 0.069 3.931 14 C 0.097 3.903 15 H 0.064 0.936 16 C 0.023 3.977 17 N -0.539 5.539 18 C 0.025 3.975 19 C 0.023 3.977 20 C 0.085 3.915 21 H 0.101 0.899 22 C -0.173 4.173 23 O -0.349 6.349 24 H 0.003 0.997 25 H 0.079 0.921 26 H 0.032 0.968 27 H 0.261 0.739 28 H 0.329 0.671 29 H 0.069 0.931 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.061 0.939 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 -1.996 17.493 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 H 0.016 0.984 4 C -0.555 4.555 5 H 0.077 0.923 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.308 5.308 13 C -0.061 4.061 14 C 0.038 3.962 15 H 0.082 0.918 16 C -0.106 4.106 17 N -0.264 5.264 18 C -0.123 4.123 19 C -0.105 4.105 20 C 0.026 3.974 21 H 0.118 0.882 22 C -0.231 4.231 23 O -0.268 6.268 24 H 0.022 0.978 25 H 0.097 0.903 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.146 0.854 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.043 0.957 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.080 0.920 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.647 -2.360 17.299 17.836 hybrid contribution 0.480 0.600 -0.619 0.987 sum 4.127 -1.760 16.680 17.273 Atomic orbital electron populations 1.21691 0.97882 0.99384 0.99117 1.19106 0.92698 0.92137 0.85646 0.98381 1.21237 1.31373 1.12438 0.90467 0.92268 1.24915 0.95085 0.95008 0.99004 1.69891 1.36669 1.22972 1.23479 0.86584 0.79025 0.79822 0.82087 1.20195 1.21352 1.20364 1.60615 1.31986 1.32722 1.05480 1.21883 1.00339 0.93585 0.90333 1.22226 0.94068 0.86934 0.92928 0.91771 1.22835 0.99857 0.96895 0.90982 1.62193 1.48419 1.11456 1.04303 1.22372 1.00294 0.96557 0.93110 1.22831 0.94602 0.93834 0.99261 1.22219 0.97143 0.92845 0.85178 0.88154 1.22260 0.97711 1.01337 1.01744 1.88269 1.49872 1.44007 1.44614 0.97812 0.90268 0.94926 0.92939 0.85423 0.91283 0.94951 0.93888 0.89854 0.95663 0.91453 0.91273 0.90122 0.94174 0.92439 0.92004 0.91231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.18 9.19 37.16 0.34 -2.84 16 2 C 0.21 5.53 2.60 -68.87 -0.18 5.35 16 3 H 0.00 -0.04 7.80 -51.93 -0.40 -0.44 16 4 C -0.52 -14.49 8.59 -34.44 -0.30 -14.79 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.88 11.32 55.43 0.63 -25.25 16 8 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 12 N -0.68 -15.15 6.17 -107.95 -0.67 -15.81 16 13 C 0.07 1.30 5.18 -3.82 -0.02 1.28 16 14 C 0.10 1.53 2.61 -26.68 -0.07 1.46 16 15 H 0.06 1.02 6.49 -51.93 -0.34 0.68 16 16 C 0.02 0.30 4.95 -3.71 -0.02 0.29 16 17 N -0.54 -6.40 4.36 -242.59 -1.06 -7.45 16 18 C 0.02 0.23 9.60 60.07 0.58 0.81 16 19 C 0.02 0.26 5.08 -3.71 -0.02 0.24 16 20 C 0.08 1.10 3.92 -26.68 -0.10 0.99 16 21 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 22 C -0.17 -2.08 8.89 37.16 0.33 -1.75 16 23 O -0.35 -5.93 10.15 -35.23 -0.36 -6.29 16 24 H 0.00 0.07 7.45 -51.93 -0.39 -0.32 16 25 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 28 H 0.33 7.17 8.22 -39.29 -0.32 6.85 16 29 H 0.07 1.36 7.44 -51.93 -0.39 0.97 16 30 H 0.03 0.59 8.06 -51.93 -0.42 0.17 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.90 6.13 -51.93 -0.32 0.59 16 LS Contribution 311.92 15.07 4.70 4.70 Total: -1.00 -29.88 311.92 -8.40 -38.28 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -7.07 Total: 2.60 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 0.45 Total: -7.32 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -1.10 Total: -48.52 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.36 Total: -6.29 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.88 -8.40 -38.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697296477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.975 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds