Wall clock time and date at job start Mon Mar 30 2020 04:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46580 * 2 1 4 4 C 1.50703 * 109.47101 * 240.00290 * 2 1 3 5 5 H 1.08002 * 119.99531 * 239.99938 * 4 2 1 6 6 C 1.37876 * 120.00022 * 59.99751 * 4 2 1 7 7 N 1.31509 * 120.00189 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 119.99875 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47213 * 59.99790 * 8 6 4 10 10 H 1.48498 * 109.47272 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47269 * 300.00034 * 8 6 4 12 12 N 1.46896 * 109.47333 * 120.00235 * 2 1 3 13 13 C 1.46905 * 110.99790 * 275.00192 * 12 2 1 14 14 C 1.52999 * 109.47122 * 180.02562 * 13 12 2 15 15 H 1.08997 * 109.54201 * 59.88855 * 14 13 12 16 16 C 1.53102 * 109.50727 * 179.97438 * 14 13 12 17 17 N 1.47016 * 109.25606 * 176.78217 * 16 14 13 18 18 C 1.46902 * 110.99529 * 177.60836 * 17 16 14 19 19 C 1.47014 * 110.75376 * 301.38313 * 17 16 14 20 20 C 1.53096 * 109.25577 * 58.61838 * 19 17 16 21 21 H 1.09006 * 109.50337 * 183.21659 * 20 19 17 22 22 C 1.53000 * 109.50955 * 63.13100 * 20 19 17 23 23 O 1.43016 * 109.50507 * 299.78185 * 14 13 12 24 24 H 1.09003 * 109.47248 * 299.99305 * 1 2 3 25 25 H 1.08998 * 109.47703 * 60.00380 * 1 2 3 26 26 H 1.09001 * 109.47016 * 180.02562 * 1 2 3 27 27 H 0.97001 * 120.00335 * 180.02562 * 7 6 4 28 28 H 1.00896 * 111.00339 * 151.04778 * 12 2 1 29 29 H 1.08997 * 109.47227 * 59.99894 * 13 12 2 30 30 H 1.09006 * 109.47101 * 299.99946 * 13 12 2 31 31 H 1.08999 * 109.50407 * 56.85136 * 16 14 13 32 32 H 1.09000 * 109.50181 * 296.71691 * 16 14 13 33 33 H 1.08995 * 109.47546 * 59.99746 * 18 17 16 34 34 H 1.09001 * 109.47004 * 180.02562 * 18 17 16 35 35 H 1.09005 * 109.47121 * 299.99440 * 18 17 16 36 36 H 1.09004 * 109.50527 * 178.55195 * 19 17 16 37 37 H 1.09002 * 109.50515 * 298.68363 * 19 17 16 38 38 H 1.09001 * 109.47156 * 59.99463 * 22 20 19 39 39 H 1.08996 * 109.46961 * 179.97438 * 22 20 19 40 40 H 1.09002 * 109.46888 * 299.99800 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9427 0.8296 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5202 -4.0078 10 1 1.8259 -0.4205 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5963 -0.5329 3.5741 15 1 3.5910 -0.9284 3.3687 16 6 2.6626 0.4203 4.7704 17 7 3.0829 -0.3282 5.9640 18 6 3.2142 0.5626 7.1247 19 6 2.1476 -1.4268 6.2460 20 6 2.0865 -2.3614 5.0350 21 1 1.3517 -3.1456 5.2172 22 6 3.4614 -2.9926 4.8067 23 8 1.7071 -1.6110 3.8781 24 1 -0.3634 0.5137 0.8901 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 0.7080 1.1609 -3.4844 28 1 2.9173 -1.1205 1.0287 29 1 1.0871 0.6163 2.5525 30 1 2.7588 1.0463 2.1182 31 1 1.6790 0.8573 4.9425 32 1 3.3828 1.2123 4.5651 33 1 2.2543 1.0366 7.3294 34 1 3.5265 -0.0166 7.9936 35 1 3.9598 1.3288 6.9122 36 1 2.4919 -1.9830 7.1180 37 1 1.1558 -1.0192 6.4417 38 1 3.7512 -3.5615 5.6901 39 1 3.4171 -3.6581 3.9447 40 1 4.1954 -2.2079 4.6231 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697296477.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:33:08 Heat of formation + Delta-G solvation = -61.869208 kcal Electronic energy + Delta-G solvation = -18341.311617 eV Core-core repulsion = 15576.096030 eV Total energy + Delta-G solvation = -2765.215587 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.91671 -37.77918 -36.57170 -34.90045 -33.25359 -31.25540 -29.65824 -27.93127 -27.39220 -26.18008 -24.03651 -22.98938 -21.67580 -20.41802 -18.58252 -17.53871 -17.30724 -16.75837 -16.32313 -16.07430 -15.69588 -15.48178 -14.92182 -14.68335 -14.64418 -13.98138 -13.66249 -13.47569 -13.16648 -12.90793 -12.84546 -12.72068 -12.67509 -12.66320 -12.36912 -12.18645 -12.14371 -12.11229 -11.68107 -11.11735 -10.89400 -10.55962 -10.44094 -9.37837 -8.99030 -8.12052 -6.26357 1.43346 1.45969 1.53445 2.42732 2.78740 2.88912 3.16295 3.55415 3.90319 3.99758 4.06323 4.12326 4.19771 4.42363 4.44985 4.51611 4.59184 4.62268 4.65964 4.72560 4.79745 4.84498 4.99433 5.00882 5.05833 5.08466 5.15610 5.22605 5.43304 5.46924 5.67308 5.85652 5.90868 5.99952 6.22153 6.41785 6.49226 6.79898 7.01807 7.43943 8.93693 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.041162 B = 0.004885 C = 0.004672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.082114 B = 5730.049032 C = 5991.335445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.216 3.784 3 H -0.029 1.029 4 C -0.538 4.538 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.269 1.269 12 N -0.678 5.678 13 C 0.071 3.929 14 C 0.106 3.894 15 H 0.064 0.936 16 C 0.030 3.970 17 N -0.545 5.545 18 C 0.025 3.975 19 C 0.027 3.973 20 C 0.075 3.925 21 H 0.112 0.888 22 C -0.165 4.165 23 O -0.382 6.382 24 H 0.017 0.983 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.263 0.737 28 H 0.331 0.669 29 H 0.057 0.943 30 H 0.038 0.962 31 H 0.035 0.965 32 H 0.094 0.906 33 H 0.025 0.975 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.107 0.893 37 H 0.034 0.966 38 H 0.081 0.919 39 H 0.048 0.952 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.015 -2.732 18.704 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 H -0.012 1.012 4 C -0.577 4.577 5 H 0.077 0.923 6 C -0.186 4.186 7 N -0.558 5.558 8 Si 0.790 3.210 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.194 1.194 12 N -0.309 5.309 13 C -0.060 4.060 14 C 0.048 3.952 15 H 0.081 0.919 16 C -0.099 4.099 17 N -0.270 5.270 18 C -0.123 4.123 19 C -0.101 4.101 20 C 0.018 3.982 21 H 0.129 0.871 22 C -0.223 4.223 23 O -0.302 6.302 24 H 0.036 0.964 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.072 0.928 28 H 0.148 0.852 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.112 0.888 33 H 0.044 0.956 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.605 -3.100 18.543 19.356 hybrid contribution 0.169 0.824 -0.923 1.248 sum 4.774 -2.276 17.620 18.397 Atomic orbital electron populations 1.21518 0.97988 0.98603 0.98757 1.18923 0.92610 0.90788 0.86956 1.01166 1.21549 1.31798 1.12711 0.91600 0.92316 1.25745 0.95125 0.95670 1.02057 1.70018 1.37396 1.24116 1.24251 0.85517 0.78785 0.78574 0.78167 1.19779 1.20833 1.19415 1.60518 1.32189 1.33205 1.05009 1.21904 1.00028 0.93654 0.90371 1.22013 0.93395 0.87158 0.92638 0.91856 1.22686 0.99892 0.96459 0.90838 1.62211 1.48278 1.11874 1.04612 1.22448 1.00617 0.96639 0.92595 1.22825 0.94476 0.93591 0.99221 1.22496 0.97935 0.93190 0.84600 0.87067 1.22183 0.96848 1.00884 1.02355 1.88203 1.50685 1.44661 1.46604 0.96369 0.92355 0.95704 0.92806 0.85186 0.92463 0.94410 0.94647 0.88787 0.95601 0.89676 0.90581 0.87520 0.94731 0.89979 0.93260 0.92283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.84 9.19 71.98 0.66 -5.18 16 2 C 0.22 11.50 2.60 44.17 0.11 11.62 16 3 H -0.03 -1.69 7.80 -2.39 -0.02 -1.71 16 4 C -0.54 -30.49 8.59 25.60 0.22 -30.27 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -53.92 11.32 21.45 0.24 -53.68 16 8 Si 0.96 44.16 29.54 68.60 2.03 46.18 16 9 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.68 -30.74 6.17 -495.44 -3.06 -33.80 16 13 C 0.07 2.67 5.18 86.30 0.45 3.11 16 14 C 0.11 3.31 2.61 30.63 0.08 3.39 16 15 H 0.06 1.98 6.49 -2.39 -0.02 1.96 16 16 C 0.03 0.76 4.95 86.32 0.43 1.19 16 17 N -0.54 -11.69 4.36 -921.41 -4.01 -15.71 16 18 C 0.02 0.39 9.60 127.69 1.23 1.62 16 19 C 0.03 0.55 5.08 86.31 0.44 0.99 16 20 C 0.08 1.84 3.92 30.63 0.12 1.96 16 21 H 0.11 2.41 8.14 -2.38 -0.02 2.39 16 22 C -0.17 -3.69 8.89 71.98 0.64 -3.05 16 23 O -0.38 -12.80 10.15 -148.98 -1.51 -14.31 16 24 H 0.02 0.85 7.45 -2.39 -0.02 0.84 16 25 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 26 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 28 H 0.33 14.60 8.22 -89.70 -0.74 13.86 16 29 H 0.06 2.28 7.44 -2.39 -0.02 2.26 16 30 H 0.04 1.38 8.06 -2.38 -0.02 1.37 16 31 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 36 H 0.11 1.62 8.14 -2.39 -0.02 1.61 16 37 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.19 16 40 H 0.06 1.44 6.13 -2.39 -0.01 1.43 16 Total: -1.00 -63.57 311.92 -1.23 -64.80 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: 0.26 Total: 19.93 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: 4.82 Total: -13.42 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -6.83 Total: -103.18 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: -1.51 Total: -14.31 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.57 -1.23 -64.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697296477.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.931 kcal (2) G-P(sol) polarization free energy of solvation -63.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds