Wall clock time and date at job start Mon Mar 30 2020 04:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.50606 * 2 1 4 4 C 1.53088 * 109.51152 * 239.86442 * 2 1 3 5 5 N 1.47014 * 109.25980 * 296.91514 * 4 2 1 6 6 C 1.46901 * 111.00468 * 177.60712 * 5 4 2 7 7 C 1.47016 * 110.75332 * 301.38355 * 5 4 2 8 8 C 1.53096 * 109.25674 * 58.61053 * 7 5 4 9 9 H 1.09004 * 109.50528 * 63.09367 * 8 7 5 10 10 C 1.53003 * 109.50984 * 183.21818 * 8 7 5 11 11 N 1.46897 * 109.47285 * 185.00178 * 10 8 7 12 12 C 1.46904 * 110.99742 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.46957 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.47349 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99602 * 0.02562 * 14 13 12 16 16 C 1.37868 * 120.00313 * 180.02562 * 14 13 12 17 17 N 1.31517 * 120.00016 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00027 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46854 * 90.00441 * 18 16 14 20 20 H 1.48505 * 109.47149 * 209.99908 * 18 16 14 21 21 H 1.48499 * 109.47080 * 330.00190 * 18 16 14 22 22 O 1.43013 * 109.26425 * 303.15715 * 8 7 5 23 23 H 1.08995 * 109.47745 * 299.91619 * 1 2 3 24 24 H 1.09001 * 109.46798 * 59.92336 * 1 2 3 25 25 H 1.09003 * 109.46593 * 179.91514 * 1 2 3 26 26 H 1.08994 * 109.51094 * 176.98121 * 4 2 1 27 27 H 1.09008 * 109.50848 * 56.84618 * 4 2 1 28 28 H 1.09002 * 109.47401 * 183.63311 * 6 5 4 29 29 H 1.09001 * 109.46874 * 63.63324 * 6 5 4 30 30 H 1.09004 * 109.46970 * 303.63457 * 6 5 4 31 31 H 1.08996 * 109.50914 * 178.54964 * 7 5 4 32 32 H 1.09000 * 109.50280 * 298.68155 * 7 5 4 33 33 H 1.08999 * 109.46968 * 305.00798 * 10 8 7 34 34 H 1.08999 * 109.46959 * 65.00060 * 10 8 7 35 35 H 1.00901 * 111.00220 * 56.05258 * 11 10 8 36 36 H 1.08997 * 109.47552 * 300.00605 * 12 11 10 37 37 H 1.09006 * 109.46833 * 60.00712 * 12 11 10 38 38 H 1.08996 * 109.47304 * 300.00253 * 13 12 11 39 39 H 1.09000 * 109.47335 * 60.00598 * 13 12 11 40 40 H 0.96999 * 119.99857 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0413 -0.7244 -1.2479 5 7 1.6111 -2.1295 -1.2034 6 6 2.0338 -2.8482 -2.4129 7 6 2.1186 -2.7916 0.0072 8 6 1.6066 -2.0463 1.2426 9 1 0.5188 -2.1059 1.2787 10 6 2.1960 -2.6819 2.5034 11 7 1.6124 -2.0448 3.6915 12 6 2.1559 -2.6315 4.9238 13 6 1.5264 -1.9435 6.1368 14 6 2.0843 -2.5449 7.4011 15 1 2.8151 -3.3381 7.3449 16 6 1.6619 -2.0825 8.6293 17 7 0.7716 -1.1169 8.6976 18 14 2.3540 -2.8274 10.1963 19 1 3.5665 -2.0755 10.6082 20 1 1.3344 -2.7506 11.2732 21 1 2.7112 -4.2482 9.9531 22 8 2.0075 -0.6757 1.1666 23 1 -0.3634 0.5125 0.8907 24 1 -0.3633 0.5150 -0.8893 25 1 -0.3632 -1.0277 -0.0015 26 1 3.1299 -0.6779 -1.2755 27 1 1.6333 -0.2470 -2.1389 28 1 1.6477 -3.8671 -2.3838 29 1 3.1226 -2.8734 -2.4587 30 1 1.6448 -2.3372 -3.2937 31 1 1.7670 -3.8230 0.0325 32 1 3.2085 -2.7780 -0.0003 33 1 1.9680 -3.7477 2.5136 34 1 3.2769 -2.5415 2.5098 35 1 0.6053 -2.1051 3.6763 36 1 1.9273 -3.6969 4.9506 37 1 3.2366 -2.4910 4.9472 38 1 1.7554 -0.8783 6.1098 39 1 0.4457 -2.0836 6.1137 40 1 0.4741 -0.7918 9.5617 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697297859.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:44 Heat of formation + Delta-G solvation = -47.677543 kcal Electronic energy + Delta-G solvation = -17804.067487 eV Core-core repulsion = 15039.467297 eV Total energy + Delta-G solvation = -2764.600190 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.00453 -36.21416 -35.54243 -33.29368 -32.18492 -30.24097 -28.74448 -27.19385 -25.72771 -23.63604 -23.16579 -21.66946 -20.52162 -19.43542 -16.61928 -16.46375 -16.28323 -15.39821 -15.33503 -14.89606 -14.46525 -14.38414 -13.92091 -13.51180 -13.21247 -12.96965 -12.36088 -12.30978 -12.23205 -12.01917 -11.89707 -11.81034 -11.24908 -11.10270 -11.00268 -10.86387 -10.50856 -10.22377 -9.93990 -9.53424 -9.30082 -9.09057 -8.59406 -8.30607 -7.70688 -5.95131 -3.97604 3.35243 3.40992 3.44172 3.58600 3.80730 4.44791 4.57643 4.72130 4.81539 4.95701 5.09355 5.11584 5.22262 5.28711 5.31132 5.40323 5.40634 5.47317 5.55179 5.55632 5.62720 5.71413 5.91447 6.02480 6.10720 6.31803 6.39286 6.46382 6.70159 6.70695 7.04100 7.34838 7.55435 7.78536 7.89625 8.03226 8.15312 8.48825 9.09851 9.65817 11.16351 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051008 B = 0.003825 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.805170 B = 7319.373050 C = 7675.637652 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.539 5.539 6 C 0.025 3.975 7 C 0.023 3.977 8 C 0.096 3.904 9 H 0.068 0.932 10 C 0.067 3.933 11 N -0.682 5.682 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.521 4.521 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.287 1.287 21 H -0.275 1.275 22 O -0.353 6.353 23 H 0.062 0.938 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.082 0.918 28 H 0.069 0.931 29 H 0.025 0.975 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.037 0.963 34 H 0.074 0.926 35 H 0.335 0.665 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.026 0.974 39 H 0.013 0.987 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.952 -1.596 -22.228 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.027 3.973 3 H 0.121 0.879 4 C -0.106 4.106 5 N -0.264 5.264 6 C -0.123 4.123 7 C -0.106 4.106 8 C 0.037 3.963 9 H 0.086 0.914 10 C -0.064 4.064 11 N -0.312 5.312 12 C -0.062 4.062 13 C -0.012 4.012 14 C -0.560 4.560 15 H 0.072 0.928 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.200 1.200 22 O -0.271 6.271 23 H 0.081 0.919 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.059 0.941 27 H 0.101 0.899 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.044 0.956 39 H 0.032 0.968 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.906 -0.889 -21.943 21.979 hybrid contribution 0.653 -1.366 0.564 1.616 sum 1.559 -2.255 -21.379 21.554 Atomic orbital electron populations 1.22271 0.95642 1.03262 1.01993 1.22243 0.94492 0.96048 0.84489 0.87917 1.22837 0.98543 0.89351 0.99822 1.62181 1.59559 1.02239 1.02374 1.22379 0.98250 0.99275 0.92440 1.22816 0.98416 0.98920 0.90419 1.22171 0.98898 0.82217 0.92979 0.91445 1.21892 1.00451 0.94686 0.89322 1.60484 1.10643 1.58839 1.01253 1.22163 0.99359 0.95305 0.89331 1.19064 0.95616 0.96641 0.89906 1.21188 1.24250 1.19503 0.91047 0.92793 1.25005 0.95145 0.95111 0.99143 1.69979 1.30993 1.27472 1.24803 0.86589 0.78733 0.79542 0.83085 1.20644 1.21247 1.19952 1.88237 1.74721 1.22600 1.41571 0.91850 0.92255 0.91246 0.94103 0.89937 0.91226 0.95615 0.91325 0.89801 0.93841 0.94471 0.90746 0.84800 0.96815 0.92383 0.95550 0.96816 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.90 8.89 37.16 0.33 -1.57 16 2 C 0.09 0.99 3.92 -26.68 -0.10 0.89 16 3 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 4 C 0.02 0.23 5.08 -3.72 -0.02 0.21 16 5 N -0.54 -5.57 4.35 -242.60 -1.06 -6.63 16 6 C 0.02 0.20 9.60 60.07 0.58 0.78 16 7 C 0.02 0.26 4.95 -3.71 -0.02 0.24 16 8 C 0.10 1.29 2.58 -26.68 -0.07 1.23 16 9 H 0.07 0.92 6.49 -51.93 -0.34 0.58 16 10 C 0.07 1.02 5.35 -3.82 -0.02 1.00 16 11 N -0.68 -12.88 6.45 -113.78 -0.73 -13.62 16 12 C 0.07 1.45 5.62 -3.82 -0.02 1.43 16 13 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 14 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 17 N -0.89 -27.44 13.29 55.43 0.74 -26.70 16 18 Si 0.89 22.01 29.54 -169.99 -5.02 16.98 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 O -0.35 -5.34 10.23 -35.23 -0.36 -5.70 16 23 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 25 H 0.07 0.81 6.13 -51.93 -0.32 0.49 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.33 6.08 8.73 -39.29 -0.34 5.74 16 36 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 318.65 15.07 4.80 4.80 Total: -1.00 -31.61 318.65 -8.84 -40.45 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -7.30 Total: -0.45 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 0.10 Total: -9.14 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: -1.05 Total: -46.94 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.36 Total: -5.70 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.61 -8.84 -40.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697297859.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.227 kcal (2) G-P(sol) polarization free energy of solvation -31.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds