Wall clock time and date at job start Mon Mar 30 2020 04:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50798 * 2 1 4 4 C 1.53103 * 109.50565 * 239.87155 * 2 1 3 5 5 N 1.47021 * 109.25530 * 183.21526 * 4 2 1 6 6 C 1.46902 * 110.99533 * 182.38906 * 5 4 2 7 7 C 1.47012 * 110.75191 * 58.61635 * 5 4 2 8 8 C 1.53100 * 109.25652 * 301.38081 * 7 5 4 9 9 H 1.08999 * 109.50563 * 296.91111 * 8 7 5 10 10 C 1.53005 * 109.50517 * 176.78746 * 8 7 5 11 11 N 1.46892 * 109.46988 * 180.21891 * 10 8 7 12 12 C 1.46906 * 111.00169 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47145 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46666 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00065 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99743 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00181 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00301 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47359 * 89.98949 * 18 16 14 20 20 H 1.48492 * 109.47343 * 209.99798 * 18 16 14 21 21 H 1.48502 * 109.46886 * 329.99556 * 18 16 14 22 22 O 1.43009 * 109.25842 * 56.85395 * 8 7 5 23 23 H 1.09002 * 109.47153 * 299.91242 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.91433 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.91414 * 1 2 3 26 26 H 1.09000 * 109.50711 * 303.14442 * 4 2 1 27 27 H 1.08991 * 109.50713 * 63.28184 * 4 2 1 28 28 H 1.09000 * 109.47289 * 296.36311 * 6 5 4 29 29 H 1.08994 * 109.46922 * 56.36961 * 6 5 4 30 30 H 1.09002 * 109.46686 * 176.36039 * 6 5 4 31 31 H 1.09000 * 109.50310 * 181.44865 * 7 5 4 32 32 H 1.08996 * 109.54177 * 61.34000 * 7 5 4 33 33 H 1.09004 * 109.46830 * 300.21788 * 10 8 7 34 34 H 1.09001 * 109.46853 * 60.21468 * 10 8 7 35 35 H 1.00901 * 111.00389 * 56.04327 * 11 10 8 36 36 H 1.09002 * 109.46334 * 299.99579 * 12 11 10 37 37 H 1.08993 * 109.47249 * 59.99193 * 12 11 10 38 38 H 1.09002 * 109.47164 * 299.99075 * 13 12 11 39 39 H 1.08997 * 109.47626 * 59.99980 * 13 12 11 40 40 H 0.96998 * 120.00241 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 3.5093 -0.7889 -1.2042 6 6 4.0446 -1.4278 -2.4138 7 6 3.9640 -1.4884 0.0063 8 6 3.4334 -0.7563 1.2418 9 1 3.8535 0.2489 1.2776 10 6 3.8359 -1.5241 2.5026 11 7 3.3220 -0.8239 3.6872 12 6 3.6905 -1.5337 4.9195 13 6 3.1396 -0.7756 6.1289 14 6 3.5172 -1.5042 7.3930 15 1 4.0922 -2.4168 7.3390 16 6 3.1286 -1.0057 8.6183 17 7 3.4576 -1.6417 9.7214 18 14 2.1334 0.5725 8.7116 19 1 0.6851 0.2481 8.6625 20 1 2.4403 1.2768 9.9824 21 1 2.4838 1.4472 7.5638 22 8 2.0076 -0.6758 1.1664 23 1 -0.3633 0.5125 0.8908 24 1 -0.3633 -1.0277 -0.0015 25 1 -0.3634 0.5152 -0.8892 26 1 1.6332 -1.7348 -1.2754 27 1 1.7273 -0.1803 -2.1389 28 1 3.7043 -2.4623 -2.4593 29 1 3.6928 -0.8905 -3.2945 30 1 5.1340 -1.4045 -2.3852 31 1 5.0536 -1.5019 0.0312 32 1 3.5873 -2.5111 -0.0005 33 1 3.4170 -2.5297 2.4648 34 1 4.9227 -1.5851 2.5594 35 1 2.3227 -0.6974 3.6275 36 1 3.2709 -2.5395 4.8986 37 1 4.7763 -1.5944 4.9929 38 1 3.5596 0.2300 6.1496 39 1 2.0538 -0.7145 6.0557 40 1 3.1839 -1.2911 10.5834 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697297863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:48 Heat of formation + Delta-G solvation = -49.507975 kcal Electronic energy + Delta-G solvation = -17748.589611 eV Core-core repulsion = 14983.910048 eV Total energy + Delta-G solvation = -2764.679564 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.94088 -36.34156 -35.65514 -33.52033 -32.41339 -30.47869 -29.05326 -27.32814 -25.90952 -23.59062 -22.51809 -21.61364 -20.61875 -20.16566 -16.81188 -16.63960 -16.25606 -15.85218 -15.40181 -15.15227 -14.39889 -14.21224 -13.96948 -13.47352 -13.09270 -12.98826 -12.57378 -12.55546 -12.49278 -12.40004 -12.01667 -11.93313 -11.34431 -11.19579 -11.17426 -10.94259 -10.62036 -10.01825 -9.80459 -9.73565 -9.56100 -9.17846 -8.69474 -8.49083 -7.86297 -6.00165 -3.98220 3.36624 3.43568 3.49574 3.50779 3.59968 4.42406 4.51041 4.63118 4.73251 4.94412 4.99173 5.06007 5.14986 5.18393 5.25533 5.33930 5.34604 5.38234 5.40823 5.51615 5.53197 5.62838 5.80728 5.93045 5.96511 6.07164 6.25043 6.35324 6.62740 6.64232 6.83400 7.15900 7.22734 7.44880 7.67416 7.82793 8.00351 8.57857 9.03941 9.62541 11.13202 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.004227 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.062026 B = 6622.748919 C = 7160.552443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.090 3.910 3 H 0.067 0.933 4 C 0.023 3.977 5 N -0.543 5.543 6 C 0.025 3.975 7 C 0.023 3.977 8 C 0.097 3.903 9 H 0.075 0.925 10 C 0.069 3.931 11 N -0.691 5.691 12 C 0.073 3.927 13 C -0.010 4.010 14 C -0.520 4.520 15 H 0.070 0.930 16 C 0.066 3.934 17 N -0.905 5.905 18 Si 0.882 3.118 19 H -0.278 1.278 20 H -0.289 1.289 21 H -0.263 1.263 22 O -0.375 6.375 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.069 0.931 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.026 0.974 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.030 0.970 34 H 0.083 0.917 35 H 0.344 0.656 36 H 0.021 0.979 37 H 0.063 0.937 38 H 0.025 0.975 39 H 0.009 0.991 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.552 2.046 -25.077 25.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.032 3.968 3 H 0.085 0.915 4 C -0.105 4.105 5 N -0.267 5.267 6 C -0.123 4.123 7 C -0.105 4.105 8 C 0.039 3.961 9 H 0.093 0.907 10 C -0.061 4.061 11 N -0.323 5.323 12 C -0.055 4.055 13 C -0.048 4.048 14 C -0.559 4.559 15 H 0.089 0.911 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.709 3.291 19 H -0.204 1.204 20 H -0.215 1.215 21 H -0.187 1.187 22 O -0.295 6.295 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.101 0.899 28 H 0.044 0.956 29 H 0.087 0.913 30 H 0.089 0.911 31 H 0.105 0.895 32 H 0.061 0.939 33 H 0.049 0.951 34 H 0.101 0.899 35 H 0.162 0.838 36 H 0.039 0.961 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.028 0.972 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.966 2.882 -24.693 24.938 hybrid contribution -1.189 -0.833 -0.155 1.460 sum -3.155 2.049 -24.848 25.131 Atomic orbital electron populations 1.21744 0.92842 1.02891 1.02736 1.22092 0.94769 0.95720 0.84187 0.91548 1.22865 0.87740 1.00242 0.99679 1.62191 1.09119 1.52879 1.02544 1.22378 1.00782 0.96850 0.92305 1.22810 1.01261 0.96181 0.90266 1.22239 0.81044 0.99729 0.93074 0.90660 1.21883 1.00267 0.94938 0.89007 1.60550 1.19455 1.50921 1.01329 1.21958 1.00203 0.94891 0.88442 1.19543 0.95597 0.96759 0.92871 1.21087 1.35103 1.10470 0.89219 0.91142 1.25010 0.95703 0.97145 0.95619 1.69918 1.46916 1.39864 0.97744 0.86739 0.80582 0.84210 0.77583 1.20389 1.21466 1.18700 1.87988 1.21034 1.78142 1.42306 0.91178 0.91988 0.91170 0.94036 0.89876 0.95573 0.91275 0.91075 0.89451 0.93942 0.95139 0.89911 0.83791 0.96085 0.91803 0.95632 0.97249 0.92768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.57 37.16 0.36 -0.94 16 2 C 0.09 0.99 3.43 -26.68 -0.09 0.89 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C 0.02 0.22 4.95 -3.70 -0.02 0.20 16 5 N -0.54 -5.59 4.99 -242.59 -1.21 -6.80 16 6 C 0.03 0.20 9.60 60.07 0.58 0.77 16 7 C 0.02 0.26 4.95 -3.71 -0.02 0.24 16 8 C 0.10 1.27 3.08 -26.68 -0.08 1.19 16 9 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 10 C 0.07 1.01 5.42 -3.83 -0.02 0.99 16 11 N -0.69 -12.46 6.50 -113.78 -0.74 -13.20 16 12 C 0.07 1.54 5.62 -3.82 -0.02 1.52 16 13 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 14 C -0.52 -15.27 9.66 -34.44 -0.33 -15.60 16 15 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.91 -28.48 13.96 55.43 0.77 -27.70 16 18 Si 0.88 22.37 27.47 -169.99 -4.67 17.70 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 21 H -0.26 -6.48 6.54 56.52 0.37 -6.11 16 22 O -0.38 -5.18 9.45 -35.23 -0.33 -5.52 16 23 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.34 6.24 8.12 -39.29 -0.32 5.92 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 38 H 0.03 0.65 7.20 -51.93 -0.37 0.28 16 39 H 0.01 0.23 7.57 -51.93 -0.39 -0.16 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 LS Contribution 318.62 15.07 4.80 4.80 Total: -1.00 -31.81 318.62 -8.68 -40.49 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -7.44 Total: -0.56 kcal Atomic # 6 Polarization: -9.34 SS G_CDS: 0.13 Total: -9.21 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: -1.18 Total: -47.71 kcal Atomic # 8 Polarization: -5.18 SS G_CDS: -0.33 Total: -5.52 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.81 -8.68 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697297863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.015 kcal (2) G-P(sol) polarization free energy of solvation -31.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds