Wall clock time and date at job start Mon Mar 30 2020 04:32:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.50798 * 2 1 4 4 C 1.53103 * 109.50565 * 239.87155 * 2 1 3 5 5 N 1.47021 * 109.25530 * 183.21526 * 4 2 1 6 6 C 1.46902 * 110.99533 * 182.38906 * 5 4 2 7 7 C 1.47012 * 110.75191 * 58.61635 * 5 4 2 8 8 C 1.53100 * 109.25652 * 301.38081 * 7 5 4 9 9 H 1.08999 * 109.50563 * 296.91111 * 8 7 5 10 10 C 1.53005 * 109.50517 * 176.78746 * 8 7 5 11 11 N 1.46892 * 109.46988 * 180.21891 * 10 8 7 12 12 C 1.46906 * 111.00169 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.47145 * 179.97438 * 12 11 10 14 14 C 1.50706 * 109.46666 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00065 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99743 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00181 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00301 * 0.02562 * 16 14 13 19 19 H 1.48500 * 109.47359 * 89.98949 * 18 16 14 20 20 H 1.48492 * 109.47343 * 209.99798 * 18 16 14 21 21 H 1.48502 * 109.46886 * 329.99556 * 18 16 14 22 22 O 1.43009 * 109.25842 * 56.85395 * 8 7 5 23 23 H 1.09002 * 109.47153 * 299.91242 * 1 2 3 24 24 H 1.09001 * 109.46832 * 179.91433 * 1 2 3 25 25 H 1.09004 * 109.47261 * 59.91414 * 1 2 3 26 26 H 1.09000 * 109.50711 * 303.14442 * 4 2 1 27 27 H 1.08991 * 109.50713 * 63.28184 * 4 2 1 28 28 H 1.09000 * 109.47289 * 296.36311 * 6 5 4 29 29 H 1.08994 * 109.46922 * 56.36961 * 6 5 4 30 30 H 1.09002 * 109.46686 * 176.36039 * 6 5 4 31 31 H 1.09000 * 109.50310 * 181.44865 * 7 5 4 32 32 H 1.08996 * 109.54177 * 61.34000 * 7 5 4 33 33 H 1.09004 * 109.46830 * 300.21788 * 10 8 7 34 34 H 1.09001 * 109.46853 * 60.21468 * 10 8 7 35 35 H 1.00901 * 111.00389 * 56.04327 * 11 10 8 36 36 H 1.09002 * 109.46334 * 299.99579 * 12 11 10 37 37 H 1.08993 * 109.47249 * 59.99193 * 12 11 10 38 38 H 1.09002 * 109.47164 * 299.99075 * 13 12 11 39 39 H 1.08997 * 109.47626 * 59.99980 * 13 12 11 40 40 H 0.96998 * 120.00241 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2482 5 7 3.5093 -0.7889 -1.2042 6 6 4.0446 -1.4278 -2.4138 7 6 3.9640 -1.4884 0.0063 8 6 3.4334 -0.7563 1.2418 9 1 3.8535 0.2489 1.2776 10 6 3.8359 -1.5241 2.5026 11 7 3.3220 -0.8239 3.6872 12 6 3.6905 -1.5337 4.9195 13 6 3.1396 -0.7756 6.1289 14 6 3.5172 -1.5042 7.3930 15 1 4.0922 -2.4168 7.3390 16 6 3.1286 -1.0057 8.6183 17 7 3.4576 -1.6417 9.7214 18 14 2.1334 0.5725 8.7116 19 1 0.6851 0.2481 8.6625 20 1 2.4403 1.2768 9.9824 21 1 2.4838 1.4472 7.5638 22 8 2.0076 -0.6758 1.1664 23 1 -0.3633 0.5125 0.8908 24 1 -0.3633 -1.0277 -0.0015 25 1 -0.3634 0.5152 -0.8892 26 1 1.6332 -1.7348 -1.2754 27 1 1.7273 -0.1803 -2.1389 28 1 3.7043 -2.4623 -2.4593 29 1 3.6928 -0.8905 -3.2945 30 1 5.1340 -1.4045 -2.3852 31 1 5.0536 -1.5019 0.0312 32 1 3.5873 -2.5111 -0.0005 33 1 3.4170 -2.5297 2.4648 34 1 4.9227 -1.5851 2.5594 35 1 2.3227 -0.6974 3.6275 36 1 3.2709 -2.5395 4.8986 37 1 4.7763 -1.5944 4.9929 38 1 3.5596 0.2300 6.1496 39 1 2.0538 -0.7145 6.0557 40 1 3.1839 -1.2911 10.5834 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697297863.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:47 Heat of formation + Delta-G solvation = -73.774785 kcal Electronic energy + Delta-G solvation = -17749.641899 eV Core-core repulsion = 14983.910048 eV Total energy + Delta-G solvation = -2765.731851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.83449 -37.67465 -36.63015 -35.20099 -33.95268 -31.97883 -30.32091 -28.03713 -27.25354 -25.16404 -23.39018 -22.75614 -22.16754 -21.35942 -18.95737 -17.70817 -17.11369 -17.00041 -16.39665 -16.28811 -16.02852 -15.54736 -15.12960 -14.78276 -14.67471 -14.35412 -13.92875 -13.56156 -13.42497 -13.23790 -13.11228 -12.90564 -12.77834 -12.72017 -12.25071 -12.10490 -11.89500 -11.76402 -11.71909 -11.42863 -11.32781 -10.77008 -10.54667 -9.46171 -9.33819 -8.30164 -6.34777 1.37091 1.39298 1.53022 2.37295 2.64656 2.76354 3.05305 3.28229 3.82988 3.91265 3.97426 4.07951 4.15952 4.29709 4.40343 4.44947 4.45864 4.52352 4.57914 4.63140 4.64068 4.69731 4.73161 4.91885 4.96070 4.97160 5.00086 5.11879 5.26959 5.28140 5.47933 5.62722 5.85644 5.94224 6.10680 6.24378 6.29535 6.50400 6.73371 7.30242 8.86484 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038661 B = 0.004227 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.062026 B = 6622.748919 C = 7160.552443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.083 3.917 3 H 0.062 0.938 4 C 0.026 3.974 5 N -0.554 5.554 6 C 0.025 3.975 7 C 0.029 3.971 8 C 0.103 3.897 9 H 0.066 0.934 10 C 0.070 3.930 11 N -0.691 5.691 12 C 0.086 3.914 13 C -0.004 4.004 14 C -0.534 4.534 15 H 0.033 0.967 16 C 0.005 3.995 17 N -0.950 5.950 18 Si 0.954 3.046 19 H -0.266 1.266 20 H -0.282 1.282 21 H -0.249 1.249 22 O -0.398 6.398 23 H 0.060 0.940 24 H 0.058 0.942 25 H 0.095 0.905 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.027 0.973 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.099 0.901 32 H 0.038 0.962 33 H 0.029 0.971 34 H 0.094 0.906 35 H 0.344 0.656 36 H 0.015 0.985 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.015 0.985 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 3.369 -27.180 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.026 3.974 3 H 0.080 0.920 4 C -0.102 4.102 5 N -0.279 5.279 6 C -0.123 4.123 7 C -0.099 4.099 8 C 0.045 3.955 9 H 0.084 0.916 10 C -0.060 4.060 11 N -0.322 5.322 12 C -0.043 4.043 13 C -0.042 4.042 14 C -0.573 4.573 15 H 0.051 0.949 16 C -0.191 4.191 17 N -0.591 5.591 18 Si 0.777 3.223 19 H -0.191 1.191 20 H -0.207 1.207 21 H -0.173 1.173 22 O -0.318 6.318 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.114 0.886 26 H 0.055 0.945 27 H 0.122 0.878 28 H 0.046 0.954 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.112 0.888 35 H 0.162 0.838 36 H 0.033 0.967 37 H 0.079 0.921 38 H 0.042 0.958 39 H 0.034 0.966 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.740 4.198 -26.831 27.295 hybrid contribution -0.907 -1.309 0.466 1.659 sum -3.648 2.889 -26.364 26.772 Atomic orbital electron populations 1.21749 0.91520 1.02919 1.03564 1.22308 0.95848 0.95376 0.83900 0.92000 1.22860 0.87467 1.00078 0.99761 1.62215 1.09519 1.53192 1.02976 1.22443 1.01207 0.96949 0.91681 1.22706 1.01845 0.95539 0.89845 1.22094 0.81124 0.99136 0.93151 0.91590 1.21965 1.00823 0.94819 0.88357 1.60476 1.19553 1.50917 1.01273 1.21652 0.99712 0.94231 0.88679 1.19429 0.95928 0.96370 0.92458 1.21408 1.34648 1.09712 0.91527 0.94876 1.26000 0.96963 1.01124 0.95054 1.70062 1.48458 1.42011 0.98571 0.85598 0.79085 0.79425 0.78178 1.19130 1.20737 1.17256 1.87957 1.21235 1.78649 1.43969 0.92093 0.92316 0.88599 0.94489 0.87787 0.95449 0.89882 0.90398 0.88269 0.94387 0.95226 0.88824 0.83797 0.96712 0.92086 0.95813 0.96648 0.92386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 9.57 71.98 0.69 -1.59 16 2 C 0.08 1.69 3.43 30.63 0.10 1.79 16 3 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 4 C 0.03 0.45 4.95 86.31 0.43 0.88 16 5 N -0.55 -10.22 4.99 -921.42 -4.59 -14.81 16 6 C 0.02 0.33 9.60 127.69 1.23 1.56 16 7 C 0.03 0.60 4.95 86.32 0.43 1.02 16 8 C 0.10 2.58 3.08 30.63 0.09 2.67 16 9 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 10 C 0.07 1.98 5.42 86.31 0.47 2.45 16 11 N -0.69 -24.28 6.50 -513.89 -3.34 -27.62 16 12 C 0.09 3.61 5.62 86.30 0.49 4.10 16 13 C 0.00 -0.20 4.30 29.85 0.13 -0.07 16 14 C -0.53 -31.93 9.66 25.60 0.25 -31.68 16 15 H 0.03 2.15 7.99 -2.91 -0.02 2.13 16 16 C 0.01 0.33 5.47 84.65 0.46 0.79 16 17 N -0.95 -60.82 13.96 21.45 0.30 -60.52 16 18 Si 0.95 45.76 27.47 68.60 1.88 47.64 16 19 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 20 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 21 H -0.25 -11.31 6.54 99.48 0.65 -10.66 16 22 O -0.40 -10.60 9.45 -148.98 -1.41 -12.00 16 23 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.34 12.15 8.12 -89.69 -0.73 11.42 16 36 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.02 1.18 7.20 -2.39 -0.02 1.16 16 39 H 0.02 0.73 7.57 -2.39 -0.02 0.72 16 40 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -68.21 318.62 -2.20 -70.41 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.20 Total: 14.98 kcal Atomic # 6 Polarization: -22.85 SS G_CDS: 4.76 Total: -18.08 kcal Atomic # 7 Polarization: -95.31 SS G_CDS: -7.64 Total: -102.95 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: -1.41 Total: -12.00 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -68.21 -2.20 -70.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697297863.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.364 kcal (2) G-P(sol) polarization free energy of solvation -68.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds