Wall clock time and date at job start Mon Mar 30 2020 04:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.51014 * 2 1 4 4 C 1.53098 * 109.50734 * 120.09259 * 2 1 3 5 5 N 1.47008 * 109.25797 * 63.08263 * 4 2 1 6 6 C 1.46904 * 110.99810 * 182.39496 * 5 4 2 7 7 C 1.47011 * 110.75515 * 58.61988 * 5 4 2 8 8 C 1.53097 * 109.25762 * 301.38252 * 7 5 4 9 9 H 1.09002 * 109.50402 * 296.87141 * 8 7 5 10 10 C 1.52997 * 109.50975 * 176.78261 * 8 7 5 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 8 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47092 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99873 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00303 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99645 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47255 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46940 * 120.00178 * 18 16 14 21 21 H 1.48500 * 109.46824 * 239.99764 * 18 16 14 22 22 O 1.43013 * 109.50732 * 239.87252 * 2 1 3 23 23 H 1.09000 * 109.47069 * 299.91114 * 1 2 3 24 24 H 1.08996 * 109.46869 * 59.90976 * 1 2 3 25 25 H 1.08999 * 109.47108 * 179.91170 * 1 2 3 26 26 H 1.09003 * 109.50207 * 303.14828 * 4 2 1 27 27 H 1.09000 * 109.50927 * 183.02031 * 4 2 1 28 28 H 1.09000 * 109.47290 * 296.36158 * 6 5 4 29 29 H 1.09001 * 109.47095 * 56.36695 * 6 5 4 30 30 H 1.09002 * 109.47152 * 176.36237 * 6 5 4 31 31 H 1.08997 * 109.50946 * 181.45007 * 7 5 4 32 32 H 1.09000 * 109.50440 * 61.31502 * 7 5 4 33 33 H 1.09002 * 109.47153 * 59.99880 * 10 8 7 34 34 H 1.09001 * 109.46832 * 300.00071 * 10 8 7 35 35 H 1.00908 * 110.99847 * 56.04959 * 11 10 8 36 36 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 37 37 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 38 38 H 1.09005 * 109.47424 * 300.00229 * 13 12 11 39 39 H 1.09004 * 109.47266 * 59.99979 * 13 12 11 40 40 H 0.96998 * 120.00316 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7236 1.2486 5 7 1.6110 -2.1286 1.2051 6 6 2.0335 -2.8463 2.4152 7 6 2.1185 -2.7916 -0.0049 8 6 1.6065 -2.0474 -1.2410 9 1 0.5188 -2.1076 -1.2774 10 6 2.1959 -2.6840 -2.5012 11 7 1.7037 -1.9697 -3.6867 12 6 2.2507 -2.5543 -4.9184 13 6 1.7171 -1.7852 -6.1286 14 6 2.2777 -2.3853 -7.3922 15 1 2.9472 -3.2310 -7.3375 16 6 1.9359 -1.8547 -8.6180 17 7 1.1203 -0.8252 -8.6847 18 14 2.6303 -2.5991 -10.1844 19 1 3.5160 -3.7402 -9.8398 20 1 1.5159 -3.0779 -11.0411 21 1 3.4114 -1.5705 -10.9172 22 8 2.0076 -0.6766 -1.1659 23 1 -0.3633 0.5124 0.8908 24 1 -0.3633 0.5152 -0.8891 25 1 -0.3633 -1.0277 -0.0016 26 1 1.6332 -0.2453 2.1390 27 1 3.1299 -0.6770 1.2762 28 1 3.1223 -2.8716 2.4611 29 1 1.6445 -2.3346 3.2956 30 1 1.6473 -3.8652 2.3869 31 1 1.7668 -3.8230 -0.0295 32 1 3.2084 -2.7781 0.0027 33 1 1.8931 -3.7296 -2.5558 34 1 3.2836 -2.6221 -2.4648 35 1 1.9155 -0.9847 -3.6293 36 1 3.3386 -2.4908 -4.8988 37 1 1.9488 -3.5993 -4.9896 38 1 0.6291 -1.8482 -6.1485 39 1 2.0192 -0.7403 -6.0571 40 1 0.8795 -0.4522 -9.5471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697297865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:51 Heat of formation + Delta-G solvation = -49.947707 kcal Electronic energy + Delta-G solvation = -17822.208745 eV Core-core repulsion = 15057.510113 eV Total energy + Delta-G solvation = -2764.698632 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.05301 -36.23293 -35.53192 -33.29716 -32.18203 -30.26910 -28.76706 -27.20920 -25.72599 -23.64869 -23.18787 -21.64012 -20.46126 -19.47525 -16.67109 -16.41610 -16.25823 -15.65986 -15.34513 -14.73854 -14.50885 -14.38230 -13.99681 -13.50704 -13.33438 -12.89946 -12.42486 -12.28122 -12.06601 -12.02790 -11.93007 -11.81779 -11.29895 -11.09911 -10.96841 -10.85798 -10.52678 -10.31931 -9.92605 -9.59135 -9.29700 -9.07487 -8.60275 -8.30898 -7.72673 -5.95087 -3.97427 3.34244 3.41290 3.45502 3.56948 3.75710 4.45497 4.57854 4.69396 4.79593 4.93426 5.11370 5.13415 5.21745 5.28025 5.31103 5.40215 5.40754 5.44934 5.54700 5.56340 5.64810 5.72118 5.94340 6.05096 6.09259 6.32701 6.40266 6.49071 6.69586 6.69699 7.04716 7.25389 7.55824 7.80694 7.89826 8.06199 8.16232 8.49368 9.10208 9.66014 11.16440 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051163 B = 0.003840 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.143496 B = 7290.056033 C = 7655.976473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.090 3.910 3 H 0.103 0.897 4 C 0.023 3.977 5 N -0.538 5.538 6 C 0.025 3.975 7 C 0.024 3.976 8 C 0.094 3.906 9 H 0.079 0.921 10 C 0.069 3.931 11 N -0.688 5.688 12 C 0.066 3.934 13 C 0.025 3.975 14 C -0.520 4.520 15 H 0.054 0.946 16 C 0.057 3.943 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 O -0.372 6.372 23 H 0.059 0.941 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.025 0.975 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.028 0.972 35 H 0.345 0.655 36 H 0.014 0.986 37 H 0.057 0.943 38 H 0.025 0.975 39 H 0.014 0.986 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.274 -1.199 22.310 22.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.032 3.968 3 H 0.121 0.879 4 C -0.105 4.105 5 N -0.263 5.263 6 C -0.123 4.123 7 C -0.105 4.105 8 C 0.035 3.965 9 H 0.097 0.903 10 C -0.062 4.062 11 N -0.319 5.319 12 C -0.063 4.063 13 C -0.013 4.013 14 C -0.559 4.559 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.211 1.211 22 O -0.291 6.291 23 H 0.078 0.922 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.058 0.942 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.046 0.954 35 H 0.163 0.837 36 H 0.032 0.968 37 H 0.075 0.925 38 H 0.044 0.956 39 H 0.033 0.967 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 0.206 -1.371 21.994 22.037 hybrid contribution 2.057 -0.173 -0.526 2.130 sum 2.263 -1.544 21.468 21.642 Atomic orbital electron populations 1.22272 0.95400 1.03518 1.02016 1.22213 0.94613 0.95802 0.84166 0.87933 1.22828 0.98479 0.89481 0.99751 1.62174 1.59541 1.02157 1.02407 1.22380 0.98213 0.99343 0.92405 1.22811 0.98196 0.99116 0.90366 1.22263 0.99915 0.81342 0.92947 0.90290 1.21889 0.96838 0.98131 0.89329 1.60564 1.62575 1.07642 1.01122 1.22160 0.95483 0.99155 0.89465 1.19070 0.97205 0.95003 0.89994 1.21228 1.28167 1.15320 0.91189 0.92734 1.25008 0.95217 0.95059 0.99143 1.69982 1.34866 1.23581 1.24806 0.86537 0.78856 0.79131 0.83466 1.19791 1.20993 1.21063 1.88055 1.75235 1.23314 1.42492 0.92193 0.91828 0.91011 0.89860 0.94178 0.95656 0.91323 0.91154 0.89580 0.94061 0.90175 0.95422 0.83684 0.96759 0.92465 0.95631 0.96747 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.88 8.89 37.16 0.33 -1.55 16 2 C 0.09 1.01 3.92 -26.68 -0.10 0.90 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.02 0.22 5.08 -3.71 -0.02 0.21 16 5 N -0.54 -5.54 4.35 -242.60 -1.06 -6.59 16 6 C 0.02 0.20 9.60 60.07 0.58 0.78 16 7 C 0.02 0.27 4.95 -3.71 -0.02 0.25 16 8 C 0.09 1.26 2.67 -26.68 -0.07 1.19 16 9 H 0.08 1.13 6.49 -51.93 -0.34 0.80 16 10 C 0.07 1.05 5.42 -3.83 -0.02 1.03 16 11 N -0.69 -13.13 6.50 -113.78 -0.74 -13.87 16 12 C 0.07 1.44 5.62 -3.82 -0.02 1.42 16 13 C 0.02 0.67 5.23 -27.89 -0.15 0.52 16 14 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 15 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -27.45 13.29 55.43 0.74 -26.72 16 18 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 19 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 O -0.37 -5.34 9.63 -35.23 -0.34 -5.68 16 23 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.07 0.85 6.12 -51.93 -0.32 0.53 16 26 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.34 6.74 8.13 -39.29 -0.32 6.42 16 36 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 317.65 15.07 4.79 4.79 Total: -1.00 -31.20 317.65 -8.82 -40.02 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.28 Total: 0.19 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.13 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: -1.06 Total: -47.18 kcal Atomic # 8 Polarization: -5.34 SS G_CDS: -0.34 Total: -5.68 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.20 -8.82 -40.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697297865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.931 kcal (2) G-P(sol) polarization free energy of solvation -31.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds