Wall clock time and date at job start Mon Mar 30 2020 04:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.51014 * 2 1 4 4 C 1.53098 * 109.50734 * 120.09259 * 2 1 3 5 5 N 1.47008 * 109.25797 * 63.08263 * 4 2 1 6 6 C 1.46904 * 110.99810 * 182.39496 * 5 4 2 7 7 C 1.47011 * 110.75515 * 58.61988 * 5 4 2 8 8 C 1.53097 * 109.25762 * 301.38252 * 7 5 4 9 9 H 1.09002 * 109.50402 * 296.87141 * 8 7 5 10 10 C 1.52997 * 109.50975 * 176.78261 * 8 7 5 11 11 N 1.46899 * 109.47254 * 179.97438 * 10 8 7 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47092 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99873 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00303 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99645 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47255 * 359.97438 * 18 16 14 20 20 H 1.48495 * 109.46940 * 120.00178 * 18 16 14 21 21 H 1.48500 * 109.46824 * 239.99764 * 18 16 14 22 22 O 1.43013 * 109.50732 * 239.87252 * 2 1 3 23 23 H 1.09000 * 109.47069 * 299.91114 * 1 2 3 24 24 H 1.08996 * 109.46869 * 59.90976 * 1 2 3 25 25 H 1.08999 * 109.47108 * 179.91170 * 1 2 3 26 26 H 1.09003 * 109.50207 * 303.14828 * 4 2 1 27 27 H 1.09000 * 109.50927 * 183.02031 * 4 2 1 28 28 H 1.09000 * 109.47290 * 296.36158 * 6 5 4 29 29 H 1.09001 * 109.47095 * 56.36695 * 6 5 4 30 30 H 1.09002 * 109.47152 * 176.36237 * 6 5 4 31 31 H 1.08997 * 109.50946 * 181.45007 * 7 5 4 32 32 H 1.09000 * 109.50440 * 61.31502 * 7 5 4 33 33 H 1.09002 * 109.47153 * 59.99880 * 10 8 7 34 34 H 1.09001 * 109.46832 * 300.00071 * 10 8 7 35 35 H 1.00908 * 110.99847 * 56.04959 * 11 10 8 36 36 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 37 37 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 38 38 H 1.09005 * 109.47424 * 300.00229 * 13 12 11 39 39 H 1.09004 * 109.47266 * 59.99979 * 13 12 11 40 40 H 0.96998 * 120.00316 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0413 -0.7236 1.2486 5 7 1.6110 -2.1286 1.2051 6 6 2.0335 -2.8463 2.4152 7 6 2.1185 -2.7916 -0.0049 8 6 1.6065 -2.0474 -1.2410 9 1 0.5188 -2.1076 -1.2774 10 6 2.1959 -2.6840 -2.5012 11 7 1.7037 -1.9697 -3.6867 12 6 2.2507 -2.5543 -4.9184 13 6 1.7171 -1.7852 -6.1286 14 6 2.2777 -2.3853 -7.3922 15 1 2.9472 -3.2310 -7.3375 16 6 1.9359 -1.8547 -8.6180 17 7 1.1203 -0.8252 -8.6847 18 14 2.6303 -2.5991 -10.1844 19 1 3.5160 -3.7402 -9.8398 20 1 1.5159 -3.0779 -11.0411 21 1 3.4114 -1.5705 -10.9172 22 8 2.0076 -0.6766 -1.1659 23 1 -0.3633 0.5124 0.8908 24 1 -0.3633 0.5152 -0.8891 25 1 -0.3633 -1.0277 -0.0016 26 1 1.6332 -0.2453 2.1390 27 1 3.1299 -0.6770 1.2762 28 1 3.1223 -2.8716 2.4611 29 1 1.6445 -2.3346 3.2956 30 1 1.6473 -3.8652 2.3869 31 1 1.7668 -3.8230 -0.0295 32 1 3.2084 -2.7781 0.0027 33 1 1.8931 -3.7296 -2.5558 34 1 3.2836 -2.6221 -2.4648 35 1 1.9155 -0.9847 -3.6293 36 1 3.3386 -2.4908 -4.8988 37 1 1.9488 -3.5993 -4.9896 38 1 0.6291 -1.8482 -6.1485 39 1 2.0192 -0.7403 -6.0571 40 1 0.8795 -0.4522 -9.5471 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697297865.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:50 Heat of formation + Delta-G solvation = -72.817584 kcal Electronic energy + Delta-G solvation = -17823.200458 eV Core-core repulsion = 15057.510113 eV Total energy + Delta-G solvation = -2765.690344 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.98540 -37.61380 -36.58937 -35.18007 -33.58253 -31.61948 -30.24651 -27.96231 -27.18824 -25.30845 -24.08897 -22.78894 -22.39107 -20.41466 -18.51231 -17.69176 -17.33022 -16.88195 -16.43766 -16.18787 -15.89975 -15.55990 -15.14346 -14.74812 -14.67289 -14.19364 -14.01327 -13.53315 -13.33580 -12.98415 -12.90056 -12.84354 -12.78213 -12.62696 -12.44569 -12.25136 -12.02843 -11.93119 -11.45116 -11.30461 -11.12052 -10.57128 -10.52925 -9.38589 -9.28850 -8.19704 -6.31652 1.40882 1.41760 1.55210 2.41038 2.72105 2.83878 3.13501 3.35225 3.85722 3.95214 4.00369 4.08404 4.20283 4.31964 4.41428 4.48520 4.51937 4.57057 4.58009 4.66237 4.67925 4.72333 4.78032 4.96701 5.00056 5.04148 5.07634 5.13788 5.41742 5.44723 5.66984 5.78173 5.90709 5.98031 6.12908 6.24627 6.32677 6.52015 6.85726 7.37656 8.92908 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.051163 B = 0.003840 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.143496 B = 7290.056033 C = 7655.976473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.081 3.919 3 H 0.114 0.886 4 C 0.027 3.973 5 N -0.547 5.547 6 C 0.025 3.975 7 C 0.031 3.969 8 C 0.100 3.900 9 H 0.068 0.932 10 C 0.069 3.931 11 N -0.693 5.693 12 C 0.083 3.917 13 C 0.031 3.969 14 C -0.544 4.544 15 H 0.062 0.938 16 C -0.001 4.001 17 N -0.932 5.932 18 Si 0.970 3.030 19 H -0.261 1.261 20 H -0.277 1.277 21 H -0.278 1.278 22 O -0.398 6.398 23 H 0.081 0.919 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.105 0.895 27 H 0.036 0.964 28 H 0.026 0.974 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.098 0.902 32 H 0.038 0.962 33 H 0.093 0.907 34 H 0.029 0.971 35 H 0.340 0.660 36 H 0.016 0.984 37 H 0.063 0.937 38 H -0.005 1.005 39 H -0.012 1.012 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.011 -2.209 23.320 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.024 3.976 3 H 0.132 0.868 4 C -0.101 4.101 5 N -0.272 5.272 6 C -0.123 4.123 7 C -0.098 4.098 8 C 0.041 3.959 9 H 0.086 0.914 10 C -0.060 4.060 11 N -0.324 5.324 12 C -0.045 4.045 13 C -0.006 4.006 14 C -0.583 4.583 15 H 0.080 0.920 16 C -0.199 4.199 17 N -0.572 5.572 18 Si 0.794 3.206 19 H -0.185 1.185 20 H -0.202 1.202 21 H -0.203 1.203 22 O -0.318 6.318 23 H 0.100 0.900 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.123 0.877 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.101 0.899 30 H 0.095 0.905 31 H 0.117 0.883 32 H 0.056 0.944 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.158 0.842 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.013 0.987 39 H 0.006 0.994 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.946 -2.391 23.037 23.180 hybrid contribution 1.788 0.200 -0.776 1.959 sum 2.734 -2.192 22.261 22.535 Atomic orbital electron populations 1.22203 0.95218 1.02783 1.02316 1.22461 0.94815 0.96378 0.83948 0.86826 1.22808 0.98284 0.89336 0.99655 1.62190 1.59765 1.02497 1.02769 1.22442 0.98418 0.99675 0.91731 1.22690 0.97855 0.99401 0.89850 1.22111 0.99072 0.81537 0.93136 0.91420 1.21987 0.96977 0.98575 0.88488 1.60492 1.62837 1.07603 1.01505 1.21802 0.95265 0.98559 0.88915 1.18925 0.95253 0.94212 0.92243 1.21647 1.28562 1.15775 0.92294 0.92009 1.26020 0.95364 0.95375 1.03164 1.70121 1.36081 1.24993 1.26053 0.85327 0.78306 0.78547 0.78398 1.18466 1.20246 1.20336 1.88013 1.75698 1.23784 1.44272 0.90021 0.93374 0.92173 0.87704 0.94525 0.95498 0.89935 0.90461 0.88338 0.94389 0.88847 0.95260 0.84206 0.96541 0.91875 0.98687 0.99367 0.92720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.48 8.89 71.98 0.64 -2.84 16 2 C 0.08 1.74 3.92 30.63 0.12 1.86 16 3 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 4 C 0.03 0.48 5.08 86.32 0.44 0.92 16 5 N -0.55 -10.15 4.35 -921.44 -4.01 -14.16 16 6 C 0.02 0.33 9.60 127.69 1.23 1.56 16 7 C 0.03 0.64 4.95 86.31 0.43 1.07 16 8 C 0.10 2.63 2.67 30.63 0.08 2.72 16 9 H 0.07 1.94 6.49 -2.39 -0.02 1.92 16 10 C 0.07 2.09 5.42 86.30 0.47 2.55 16 11 N -0.69 -26.78 6.50 -513.89 -3.34 -30.12 16 12 C 0.08 3.70 5.62 86.30 0.49 4.19 16 13 C 0.03 1.74 5.23 29.85 0.16 1.89 16 14 C -0.54 -32.00 9.11 25.60 0.23 -31.77 16 15 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 16 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 17 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 18 Si 0.97 45.07 29.54 68.60 2.03 47.10 16 19 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 20 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 O -0.40 -11.34 9.63 -148.98 -1.43 -12.77 16 23 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.11 16 25 H 0.06 1.39 6.12 -2.39 -0.01 1.37 16 26 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.03 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.34 13.67 8.13 -89.69 -0.73 12.94 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 2.72 8.14 -2.39 -0.02 2.70 16 38 H -0.01 -0.32 8.14 -2.38 -0.02 -0.34 16 39 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 40 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -67.20 317.65 -1.48 -68.68 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: 0.26 Total: 16.77 kcal Atomic # 6 Polarization: -22.21 SS G_CDS: 4.74 Total: -17.47 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -7.07 Total: -102.30 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -1.43 Total: -12.77 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -67.20 -1.48 -68.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697297865.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.141 kcal (2) G-P(sol) polarization free energy of solvation -67.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds