Wall clock time and date at job start Mon Mar 30 2020 04:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47523 * 2 1 4 4 C 1.53003 * 109.46809 * 240.00178 * 2 1 3 5 5 C 1.50703 * 109.46864 * 169.22708 * 4 2 1 6 6 H 1.08003 * 120.00057 * 353.31822 * 5 4 2 7 7 C 1.37876 * 120.00185 * 173.31924 * 5 4 2 8 8 N 1.31514 * 120.00361 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99904 * 359.72597 * 7 5 4 10 10 H 1.48499 * 109.47292 * 270.27676 * 9 7 5 11 11 H 1.48504 * 109.47209 * 30.27173 * 9 7 5 12 12 H 1.48492 * 109.47623 * 150.27571 * 9 7 5 13 13 N 1.46900 * 109.47216 * 120.00495 * 2 1 3 14 14 C 1.46962 * 111.00119 * 74.27387 * 13 2 1 15 15 C 1.53048 * 109.36607 * 183.19032 * 14 13 2 16 16 N 1.46954 * 109.36319 * 301.60048 * 15 14 13 17 17 C 1.46907 * 110.99853 * 183.18678 * 16 15 14 18 18 C 1.46962 * 110.88162 * 59.31865 * 16 15 14 19 19 C 1.46954 * 111.00033 * 198.07607 * 13 2 1 20 20 H 1.09002 * 109.48830 * 296.77178 * 19 13 2 21 21 C 1.52994 * 109.49125 * 56.82317 * 19 13 2 22 22 O 1.42893 * 109.47229 * 58.11978 * 21 19 13 23 23 H 1.09000 * 109.47179 * 294.92372 * 1 2 3 24 24 H 1.09000 * 109.46793 * 54.92266 * 1 2 3 25 25 H 1.09000 * 109.47098 * 174.92212 * 1 2 3 26 26 H 1.09000 * 109.47185 * 49.23294 * 4 2 1 27 27 H 1.08995 * 109.47502 * 289.22687 * 4 2 1 28 28 H 0.96998 * 120.00143 * 179.72018 * 8 7 5 29 29 H 1.09000 * 109.48452 * 303.15873 * 14 13 2 30 30 H 1.08996 * 109.48953 * 63.21978 * 14 13 2 31 31 H 1.08997 * 109.49023 * 181.63206 * 15 14 13 32 32 H 1.09002 * 109.48473 * 61.56356 * 15 14 13 33 33 H 1.08996 * 109.47149 * 296.19896 * 17 16 15 34 34 H 1.08994 * 109.46694 * 56.20187 * 17 16 15 35 35 H 1.09003 * 109.46860 * 176.20299 * 17 16 15 36 36 H 1.09000 * 109.48452 * 180.71123 * 18 16 15 37 37 H 1.09004 * 109.48760 * 60.65202 * 18 16 15 38 38 H 1.08995 * 109.47329 * 178.12358 * 21 19 13 39 39 H 1.09001 * 109.46939 * 298.12165 * 21 19 13 40 40 H 0.96709 * 114.00383 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5234 -0.4954 -1.3893 6 1 4.0306 0.1884 -0.7248 7 6 4.2330 -1.1617 -2.3658 8 7 5.5275 -0.9643 -2.4883 9 14 3.3571 -2.3502 -3.5102 10 1 3.3689 -3.7105 -2.9146 11 1 1.9531 -1.9069 -3.7039 12 1 4.0528 -2.3781 -4.8218 13 7 2.0197 -0.6926 1.1994 14 6 1.8447 -2.1466 1.0763 15 6 2.2920 -2.8232 2.3742 16 7 3.6972 -2.4855 2.6405 17 6 4.1868 -3.1781 3.8400 18 6 3.8722 -1.0315 2.7636 19 6 3.4249 -0.3548 1.4657 20 1 4.0456 -0.7045 0.6407 21 6 3.5678 1.1620 1.6049 22 8 2.7214 1.6255 2.6588 23 1 -0.3633 0.4331 0.9319 24 1 -0.3633 0.5906 -0.8410 25 1 -0.3633 -1.0236 -0.0910 26 1 1.5284 -0.3303 -2.1288 27 1 1.8420 -1.7892 -1.1586 28 1 6.0274 -1.4361 -3.1726 29 1 0.7943 -2.3720 0.8919 30 1 2.4474 -2.5165 0.2469 31 1 2.1903 -3.9039 2.2746 32 1 1.6713 -2.4736 3.1991 33 1 3.6316 -2.8317 4.7116 34 1 4.0454 -4.2524 3.7223 35 1 5.2469 -2.9638 3.9759 36 1 4.9226 -0.8061 2.9480 37 1 3.2695 -0.6616 3.5931 38 1 4.6038 1.4098 1.8355 39 1 3.2790 1.6415 0.6696 40 1 2.7606 2.5809 2.8036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699452320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:41 Heat of formation + Delta-G solvation = -25.963292 kcal Electronic energy + Delta-G solvation = -19519.509321 eV Core-core repulsion = 16755.850731 eV Total energy + Delta-G solvation = -2763.658589 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.37085 -36.24196 -35.76671 -32.56194 -31.44255 -30.62754 -28.01263 -26.95213 -25.78566 -23.53627 -22.58205 -21.15371 -19.82679 -18.49131 -16.87764 -16.53796 -15.84107 -15.10878 -14.44145 -14.29813 -14.14123 -14.05311 -13.44936 -13.19967 -12.70263 -12.57950 -12.23211 -12.05188 -11.97347 -11.64582 -11.29457 -11.14180 -11.13728 -10.71818 -10.60302 -10.25831 -10.16714 -9.89312 -9.72203 -9.62392 -9.24287 -9.00653 -8.52685 -7.88807 -7.16546 -6.06243 -4.02889 3.29713 3.37735 3.41391 4.35818 4.44141 4.65871 4.93350 5.28560 5.38486 5.41629 5.61022 5.68999 5.77993 5.86362 5.92034 5.98669 6.00587 6.05889 6.11779 6.16690 6.24292 6.27705 6.32624 6.54067 6.63454 6.68470 6.72708 6.86832 7.17418 7.22976 7.26720 7.48901 7.51247 7.75559 7.97744 8.05601 8.17373 8.47750 8.93939 9.56381 11.05022 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.010032 C = 0.009054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.180670 B = 2790.393004 C = 3091.791738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.084 3.916 3 H 0.076 0.924 4 C -0.047 4.047 5 C -0.523 4.523 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.898 5.898 9 Si 0.875 3.125 10 H -0.277 1.277 11 H -0.268 1.268 12 H -0.290 1.290 13 N -0.510 5.510 14 C 0.049 3.951 15 C 0.062 3.938 16 N -0.541 5.541 17 C 0.029 3.971 18 C 0.071 3.929 19 C 0.068 3.932 20 H 0.121 0.879 21 C 0.083 3.917 22 O -0.561 6.561 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.044 0.956 26 H 0.014 0.986 27 H 0.021 0.979 28 H 0.263 0.737 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.019 0.981 34 H 0.062 0.938 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.057 0.943 40 H 0.362 0.638 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.353 0.184 9.531 10.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.024 4.024 3 H 0.094 0.906 4 C -0.085 4.085 5 C -0.560 4.560 6 H 0.101 0.899 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.703 3.297 10 H -0.203 1.203 11 H -0.192 1.192 12 H -0.216 1.216 13 N -0.234 5.234 14 C -0.079 4.079 15 C -0.066 4.066 16 N -0.266 5.266 17 C -0.120 4.120 18 C -0.057 4.057 19 C -0.040 4.040 20 H 0.138 0.862 21 C 0.005 3.995 22 O -0.364 6.364 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.039 0.961 28 H 0.072 0.928 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.075 0.925 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -5.336 -0.521 9.465 10.878 hybrid contribution -0.111 -0.136 -0.791 0.811 sum -5.447 -0.657 8.674 10.263 Atomic orbital electron populations 1.21792 0.96498 1.00662 1.00491 1.21652 0.93180 0.98454 0.89077 0.90644 1.20319 0.97656 0.96283 0.94241 1.21230 0.91165 1.26760 1.16884 0.89940 1.24986 0.94620 0.96434 0.96913 1.69893 1.06696 1.42843 1.34253 0.86845 0.80345 0.81995 0.80532 1.20308 1.19226 1.21585 1.62496 1.18304 1.06302 1.36334 1.22169 1.00046 0.89183 0.96519 1.22135 0.87794 0.99064 0.97600 1.62077 1.19577 1.08602 1.36296 1.22300 1.00147 0.98865 0.90674 1.22093 0.99716 0.86183 0.97758 1.22275 0.91608 0.91832 0.98307 0.86170 1.22331 0.92128 0.95206 0.89803 1.86621 1.67877 1.26125 1.55783 0.92964 0.93296 0.93717 0.96790 0.96090 0.92762 0.91477 0.91990 0.91367 0.94959 0.96283 0.91896 0.91739 0.91560 0.94284 0.94200 0.92539 0.79386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.17 37.16 0.34 -2.02 16 2 C 0.08 1.70 2.35 -67.71 -0.16 1.54 16 3 H 0.08 1.57 5.42 -51.93 -0.28 1.28 16 4 C -0.05 -1.08 3.07 -27.88 -0.09 -1.17 16 5 C -0.52 -13.94 7.56 -34.44 -0.26 -14.20 16 6 H 0.08 2.29 4.97 -52.48 -0.26 2.03 16 7 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 8 N -0.90 -26.76 13.96 55.43 0.77 -25.99 16 9 Si 0.88 21.64 27.34 -169.99 -4.65 16.99 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.43 6.75 56.52 0.38 -6.05 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.51 -10.01 4.25 -218.57 -0.93 -10.94 16 14 C 0.05 0.94 4.55 -3.77 -0.02 0.92 16 15 C 0.06 1.06 5.62 -3.77 -0.02 1.04 16 16 N -0.54 -9.63 4.97 -242.75 -1.21 -10.84 16 17 C 0.03 0.41 9.60 60.07 0.58 0.98 16 18 C 0.07 1.29 4.79 -3.77 -0.02 1.27 16 19 C 0.07 1.36 1.70 -67.66 -0.11 1.24 16 20 H 0.12 2.92 4.76 -51.93 -0.25 2.67 16 21 C 0.08 1.49 5.70 37.15 0.21 1.70 16 22 O -0.56 -9.10 12.86 -35.23 -0.45 -9.56 16 23 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.04 0.74 7.00 -51.93 -0.36 0.38 16 26 H 0.01 0.33 7.64 -51.93 -0.40 -0.06 16 27 H 0.02 0.50 4.76 -51.93 -0.25 0.25 16 28 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 29 H 0.07 1.18 6.81 -51.93 -0.35 0.83 16 30 H 0.06 1.38 6.14 -51.93 -0.32 1.06 16 31 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.04 0.73 7.69 -51.93 -0.40 0.33 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.07 5.55 -51.93 -0.29 0.78 16 40 H 0.36 4.11 9.12 45.56 0.42 4.53 16 LS Contribution 295.34 15.07 4.45 4.45 Total: -1.00 -30.16 295.34 -7.35 -37.51 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.70 Total: 5.11 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 0.36 Total: -6.74 kcal Atomic # 7 Polarization: -46.40 SS G_CDS: -1.36 Total: -47.76 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: -0.45 Total: -9.56 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.65 Total: 16.99 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.16 -7.35 -37.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699452320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.549 kcal (2) G-P(sol) polarization free energy of solvation -30.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds