Wall clock time and date at job start Mon Mar 30 2020 04:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47523 * 2 1 4 4 C 1.53003 * 109.46809 * 240.00178 * 2 1 3 5 5 C 1.50703 * 109.46864 * 169.22708 * 4 2 1 6 6 H 1.08003 * 120.00057 * 353.31822 * 5 4 2 7 7 C 1.37876 * 120.00185 * 173.31924 * 5 4 2 8 8 N 1.31514 * 120.00361 * 179.97438 * 7 5 4 9 9 Si 1.86800 * 119.99904 * 359.72597 * 7 5 4 10 10 H 1.48499 * 109.47292 * 270.27676 * 9 7 5 11 11 H 1.48504 * 109.47209 * 30.27173 * 9 7 5 12 12 H 1.48492 * 109.47623 * 150.27571 * 9 7 5 13 13 N 1.46900 * 109.47216 * 120.00495 * 2 1 3 14 14 C 1.46962 * 111.00119 * 74.27387 * 13 2 1 15 15 C 1.53048 * 109.36607 * 183.19032 * 14 13 2 16 16 N 1.46954 * 109.36319 * 301.60048 * 15 14 13 17 17 C 1.46907 * 110.99853 * 183.18678 * 16 15 14 18 18 C 1.46962 * 110.88162 * 59.31865 * 16 15 14 19 19 C 1.46954 * 111.00033 * 198.07607 * 13 2 1 20 20 H 1.09002 * 109.48830 * 296.77178 * 19 13 2 21 21 C 1.52994 * 109.49125 * 56.82317 * 19 13 2 22 22 O 1.42893 * 109.47229 * 58.11978 * 21 19 13 23 23 H 1.09000 * 109.47179 * 294.92372 * 1 2 3 24 24 H 1.09000 * 109.46793 * 54.92266 * 1 2 3 25 25 H 1.09000 * 109.47098 * 174.92212 * 1 2 3 26 26 H 1.09000 * 109.47185 * 49.23294 * 4 2 1 27 27 H 1.08995 * 109.47502 * 289.22687 * 4 2 1 28 28 H 0.96998 * 120.00143 * 179.72018 * 8 7 5 29 29 H 1.09000 * 109.48452 * 303.15873 * 14 13 2 30 30 H 1.08996 * 109.48953 * 63.21978 * 14 13 2 31 31 H 1.08997 * 109.49023 * 181.63206 * 15 14 13 32 32 H 1.09002 * 109.48473 * 61.56356 * 15 14 13 33 33 H 1.08996 * 109.47149 * 296.19896 * 17 16 15 34 34 H 1.08994 * 109.46694 * 56.20187 * 17 16 15 35 35 H 1.09003 * 109.46860 * 176.20299 * 17 16 15 36 36 H 1.09000 * 109.48452 * 180.71123 * 18 16 15 37 37 H 1.09004 * 109.48760 * 60.65202 * 18 16 15 38 38 H 1.08995 * 109.47329 * 178.12358 * 21 19 13 39 39 H 1.09001 * 109.46939 * 298.12165 * 21 19 13 40 40 H 0.96709 * 114.00383 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5234 -0.4954 -1.3893 6 1 4.0306 0.1884 -0.7248 7 6 4.2330 -1.1617 -2.3658 8 7 5.5275 -0.9643 -2.4883 9 14 3.3571 -2.3502 -3.5102 10 1 3.3689 -3.7105 -2.9146 11 1 1.9531 -1.9069 -3.7039 12 1 4.0528 -2.3781 -4.8218 13 7 2.0197 -0.6926 1.1994 14 6 1.8447 -2.1466 1.0763 15 6 2.2920 -2.8232 2.3742 16 7 3.6972 -2.4855 2.6405 17 6 4.1868 -3.1781 3.8400 18 6 3.8722 -1.0315 2.7636 19 6 3.4249 -0.3548 1.4657 20 1 4.0456 -0.7045 0.6407 21 6 3.5678 1.1620 1.6049 22 8 2.7214 1.6255 2.6588 23 1 -0.3633 0.4331 0.9319 24 1 -0.3633 0.5906 -0.8410 25 1 -0.3633 -1.0236 -0.0910 26 1 1.5284 -0.3303 -2.1288 27 1 1.8420 -1.7892 -1.1586 28 1 6.0274 -1.4361 -3.1726 29 1 0.7943 -2.3720 0.8919 30 1 2.4474 -2.5165 0.2469 31 1 2.1903 -3.9039 2.2746 32 1 1.6713 -2.4736 3.1991 33 1 3.6316 -2.8317 4.7116 34 1 4.0454 -4.2524 3.7223 35 1 5.2469 -2.9638 3.9759 36 1 4.9226 -0.8061 2.9480 37 1 3.2695 -0.6616 3.5931 38 1 4.6038 1.4098 1.8355 39 1 3.2790 1.6415 0.6696 40 1 2.7606 2.5809 2.8036 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699452320.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:40 Heat of formation + Delta-G solvation = -50.919497 kcal Electronic energy + Delta-G solvation = -19520.591503 eV Core-core repulsion = 16755.850731 eV Total energy + Delta-G solvation = -2764.740772 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.88535 -37.62521 -37.22115 -34.61035 -32.95049 -32.13296 -29.88175 -28.28042 -27.18973 -24.96163 -24.45545 -22.60648 -21.40000 -20.13165 -18.73792 -18.03904 -17.33800 -16.69588 -16.11471 -15.79249 -15.68330 -15.53411 -15.09663 -14.59050 -14.34371 -14.08846 -13.87368 -13.67298 -13.47440 -12.98759 -12.87708 -12.63209 -12.57530 -12.36561 -12.25197 -11.95739 -11.80342 -11.57974 -11.41604 -11.19007 -10.99608 -10.72254 -10.55219 -9.22135 -8.83079 -8.21393 -6.20290 1.32409 1.34820 1.44415 2.37632 3.04872 3.07375 3.22262 3.62145 3.97364 4.08513 4.16379 4.37817 4.42149 4.49381 4.54025 4.59400 4.61705 4.69644 4.72483 4.78845 4.81865 4.84932 4.99125 5.03350 5.10898 5.13685 5.18369 5.27048 5.42534 5.52811 5.57384 5.72563 6.13201 6.18599 6.33378 6.43673 6.48562 6.82310 7.04121 7.40399 8.91831 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.010032 C = 0.009054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.180670 B = 2790.393004 C = 3091.791738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.085 3.915 3 H 0.066 0.934 4 C -0.043 4.043 5 C -0.511 4.511 6 H 0.062 0.938 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.931 3.069 10 H -0.275 1.275 11 H -0.253 1.253 12 H -0.290 1.290 13 N -0.502 5.502 14 C 0.049 3.951 15 C 0.067 3.933 16 N -0.567 5.567 17 C 0.030 3.970 18 C 0.080 3.920 19 C 0.067 3.933 20 H 0.072 0.928 21 C 0.094 3.906 22 O -0.566 6.566 23 H 0.063 0.937 24 H 0.059 0.941 25 H 0.051 0.949 26 H 0.011 0.989 27 H 0.021 0.979 28 H 0.261 0.739 29 H 0.084 0.916 30 H 0.025 0.975 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.030 0.970 34 H 0.077 0.923 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.385 0.615 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.209 -0.324 10.690 12.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.023 4.023 3 H 0.084 0.916 4 C -0.081 4.081 5 C -0.549 4.549 6 H 0.080 0.920 7 C -0.183 4.183 8 N -0.585 5.585 9 Si 0.757 3.243 10 H -0.201 1.201 11 H -0.177 1.177 12 H -0.216 1.216 13 N -0.226 5.226 14 C -0.080 4.080 15 C -0.061 4.061 16 N -0.292 5.292 17 C -0.117 4.117 18 C -0.048 4.048 19 C -0.041 4.041 20 H 0.090 0.910 21 C 0.016 3.984 22 O -0.372 6.372 23 H 0.082 0.918 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.030 0.970 27 H 0.039 0.961 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.043 0.957 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -7.216 -1.013 10.641 12.897 hybrid contribution 0.489 0.083 -1.071 1.180 sum -6.727 -0.930 9.570 11.735 Atomic orbital electron populations 1.21705 0.93705 1.01494 1.01631 1.21639 0.95328 0.97524 0.87806 0.91573 1.20289 0.95294 0.96675 0.95842 1.21543 0.92963 1.25042 1.15364 0.91998 1.25746 0.95194 0.98490 0.98864 1.70026 1.08260 1.44728 1.35534 0.85943 0.79888 0.79975 0.78543 1.20085 1.17726 1.21584 1.62604 1.17791 1.06699 1.35520 1.22212 1.00420 0.88765 0.96576 1.22111 0.87536 0.99931 0.96493 1.62073 1.20237 1.08360 1.38529 1.22348 1.00433 0.99339 0.89621 1.21942 0.99693 0.86733 0.96410 1.22084 0.91015 0.93384 0.97654 0.91004 1.22042 0.92793 0.93916 0.89659 1.86544 1.67383 1.28478 1.54763 0.91843 0.92158 0.93022 0.97033 0.96082 0.92981 0.89771 0.95662 0.89507 0.94129 0.95103 0.90443 0.91295 0.91398 0.94191 0.93437 0.94167 0.76683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.06 9.17 71.98 0.66 -3.40 16 2 C 0.09 3.35 2.35 44.92 0.11 3.45 16 3 H 0.07 2.72 5.42 -2.39 -0.01 2.71 16 4 C -0.04 -1.96 3.07 29.85 0.09 -1.87 16 5 C -0.51 -27.86 7.56 25.60 0.19 -27.67 16 6 H 0.06 3.58 4.97 -2.91 -0.01 3.56 16 7 C 0.01 0.81 5.47 84.65 0.46 1.27 16 8 N -0.94 -58.08 13.96 21.45 0.30 -57.79 16 9 Si 0.93 44.90 27.34 68.60 1.88 46.78 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 11 H -0.25 -11.52 6.75 99.48 0.67 -10.84 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 N -0.50 -19.20 4.25 -845.42 -3.59 -22.79 16 14 C 0.05 1.80 4.55 86.31 0.39 2.19 16 15 C 0.07 2.15 5.62 86.31 0.49 2.64 16 16 N -0.57 -19.42 4.97 -921.93 -4.58 -24.00 16 17 C 0.03 0.79 9.60 127.69 1.23 2.02 16 18 C 0.08 2.86 4.79 86.31 0.41 3.28 16 19 C 0.07 2.71 1.70 44.92 0.08 2.78 16 20 H 0.07 3.63 4.76 -2.39 -0.01 3.62 16 21 C 0.09 3.36 5.70 71.98 0.41 3.77 16 22 O -0.57 -17.36 12.86 -148.98 -1.92 -19.27 16 23 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 1.56 7.00 -2.39 -0.02 1.55 16 26 H 0.01 0.53 7.64 -2.39 -0.02 0.51 16 27 H 0.02 0.98 4.76 -2.39 -0.01 0.97 16 28 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.08 2.77 6.81 -2.39 -0.02 2.75 16 30 H 0.03 1.12 6.14 -2.39 -0.01 1.11 16 31 H 0.09 2.43 8.13 -2.39 -0.02 2.41 16 32 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.78 8.13 -2.39 -0.02 1.76 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.04 1.41 7.69 -2.38 -0.02 1.40 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.04 1.55 5.55 -2.39 -0.01 1.54 16 40 H 0.39 7.90 9.12 -74.05 -0.68 7.23 16 Total: -1.00 -65.14 295.34 -3.08 -68.22 By element: Atomic # 1 Polarization: 20.09 SS G_CDS: 0.32 Total: 20.40 kcal Atomic # 6 Polarization: -16.06 SS G_CDS: 4.52 Total: -11.54 kcal Atomic # 7 Polarization: -96.71 SS G_CDS: -7.87 Total: -104.58 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -1.92 Total: -19.27 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Total: -65.14 -3.08 -68.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699452320.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.297 kcal (2) G-P(sol) polarization free energy of solvation -65.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds