Wall clock time and date at job start Mon Mar 30 2020 04:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46900 * 109.47181 * 120.00804 * 2 1 3 14 14 C 1.46957 * 111.00364 * 58.79647 * 13 2 1 15 15 C 1.53047 * 109.36634 * 176.81548 * 14 13 2 16 16 N 1.46958 * 109.36512 * 58.39976 * 15 14 13 17 17 C 1.46896 * 111.00127 * 176.81466 * 16 15 14 18 18 C 1.46957 * 110.88031 * 300.68210 * 16 15 14 19 19 C 1.46958 * 110.99655 * 294.99692 * 13 2 1 20 20 H 1.09001 * 109.49098 * 63.22305 * 19 13 2 21 21 C 1.52999 * 109.49205 * 303.15782 * 19 13 2 22 22 O 1.42901 * 109.47158 * 295.00110 * 21 19 13 23 23 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 25 25 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 26 26 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 27 27 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.08998 * 109.48489 * 296.78529 * 14 13 2 30 30 H 1.08995 * 109.48904 * 56.84371 * 14 13 2 31 31 H 1.09000 * 109.48823 * 298.43648 * 15 14 13 32 32 H 1.08995 * 109.50948 * 178.38166 * 15 14 13 33 33 H 1.09000 * 109.47482 * 183.80157 * 17 16 15 34 34 H 1.09004 * 109.46952 * 303.80162 * 17 16 15 35 35 H 1.09000 * 109.47317 * 63.79597 * 17 16 15 36 36 H 1.08998 * 109.48938 * 299.35168 * 18 16 15 37 37 H 1.09005 * 109.48979 * 179.29160 * 18 16 15 38 38 H 1.09005 * 109.47210 * 54.99471 * 21 19 13 39 39 H 1.08992 * 109.47502 * 175.00082 * 21 19 13 40 40 H 0.96693 * 114.00497 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.4708 0.1581 -3.1951 11 1 6.6409 -0.9780 -1.0595 12 1 6.6446 -2.2594 -3.1182 13 7 2.0197 -0.6927 1.1993 14 6 1.5252 -2.0757 1.2477 15 6 2.1201 -2.7851 2.4663 16 7 1.7490 -2.0532 3.6855 17 6 2.2387 -2.7457 4.8849 18 6 2.2436 -0.6702 3.6372 19 6 1.6486 0.0392 2.4185 20 1 0.5628 0.0683 2.5089 21 6 2.1934 1.4669 2.3426 22 8 3.6220 1.4323 2.3428 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6054 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 2.6101 -1.9094 -3.2568 29 1 0.4379 -2.0705 1.3247 30 1 1.8232 -2.6004 0.3400 31 1 3.2060 -2.8141 2.3760 32 1 1.7324 -3.8023 2.5206 33 1 1.8931 -2.2197 5.7748 34 1 1.8579 -3.7670 4.8956 35 1 3.3285 -2.7645 4.8741 36 1 3.3308 -0.6753 3.5601 37 1 1.9455 -0.1455 4.5449 38 1 1.8416 1.9419 1.4267 39 1 1.8437 2.0355 3.2042 40 1 4.0366 2.3046 2.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699452324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:44 Heat of formation + Delta-G solvation = -36.250338 kcal Electronic energy + Delta-G solvation = -19223.025834 eV Core-core repulsion = 16458.921165 eV Total energy + Delta-G solvation = -2764.104669 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.54927 -36.39204 -35.93618 -33.04528 -31.29860 -30.66700 -27.08879 -26.94667 -26.05259 -23.65061 -22.89041 -21.40515 -20.20339 -18.49037 -17.02946 -16.56722 -16.04894 -15.23360 -14.53056 -14.48878 -14.29883 -13.63805 -13.52246 -13.35906 -13.03738 -12.89826 -12.71227 -12.23351 -11.79386 -11.46095 -11.30027 -11.20931 -11.04776 -10.80054 -10.69882 -10.53476 -10.34326 -10.01063 -9.94419 -9.52419 -9.26402 -8.38548 -8.15756 -8.14251 -7.39518 -6.15628 -3.80281 3.53943 3.59377 3.75700 4.14152 4.41089 4.62645 4.70489 5.12330 5.20370 5.41685 5.48241 5.53293 5.57035 5.60407 5.67700 5.73830 5.77487 5.83135 5.87109 5.88886 5.94824 5.95004 6.14833 6.28601 6.36101 6.47742 6.57878 6.65258 6.90486 7.19524 7.23930 7.34328 7.52184 7.86018 7.95807 8.03089 8.45626 8.77658 9.11160 9.88214 11.24533 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.008010 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.180899 B = 3494.760241 C = 3570.958415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.091 3.909 3 H 0.074 0.926 4 C 0.016 3.984 5 C -0.566 4.566 6 H 0.058 0.942 7 C 0.007 3.993 8 N -0.926 5.926 9 Si 1.069 2.931 10 H -0.292 1.292 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.495 5.495 14 C 0.058 3.942 15 C 0.058 3.942 16 N -0.549 5.549 17 C 0.027 3.973 18 C 0.069 3.931 19 C 0.084 3.916 20 H 0.051 0.949 21 C 0.084 3.916 22 O -0.549 6.549 23 H 0.053 0.947 24 H 0.041 0.959 25 H 0.054 0.946 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.264 0.736 29 H 0.031 0.969 30 H 0.092 0.908 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.024 0.976 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.038 0.962 40 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.648 3.531 14.125 15.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.017 4.017 3 H 0.092 0.908 4 C -0.020 4.020 5 C -0.605 4.605 6 H 0.077 0.923 7 C -0.195 4.195 8 N -0.565 5.565 9 Si 0.899 3.101 10 H -0.219 1.219 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.219 5.219 14 C -0.070 4.070 15 C -0.070 4.070 16 N -0.273 5.273 17 C -0.121 4.121 18 C -0.059 4.059 19 C -0.025 4.025 20 H 0.069 0.931 21 C 0.005 3.995 22 O -0.352 6.352 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -3.411 2.439 13.280 13.927 hybrid contribution -1.379 1.054 0.894 1.953 sum -4.790 3.493 14.174 15.364 Atomic orbital electron populations 1.22570 1.00014 1.01438 1.00646 1.21816 0.89574 0.98735 0.91549 0.90789 1.19339 0.97617 0.94645 0.90445 1.22029 0.91393 1.36984 1.10108 0.92335 1.25745 1.06520 0.94134 0.93093 1.70769 1.09948 1.40981 1.34769 0.83541 0.75056 0.76147 0.75387 1.21909 1.21485 1.21474 1.62219 1.58639 1.00860 1.00145 1.22162 0.96473 0.90433 0.97966 1.22189 0.99281 0.96554 0.88993 1.62205 1.59706 1.02778 1.02653 1.22300 0.97827 0.99071 0.92936 1.22024 0.99044 0.88228 0.96639 1.21706 0.96722 0.92439 0.91672 0.93091 1.22215 0.82213 0.96026 0.99028 1.86671 1.18294 1.32952 1.97285 0.92822 0.93962 0.92675 0.97529 0.97255 0.92527 0.95100 0.88990 0.93676 0.91056 0.91875 0.91704 0.95716 0.92782 0.91584 0.93075 0.94399 0.78656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 8.49 37.16 0.32 -2.98 16 2 C 0.09 1.90 1.98 -67.71 -0.13 1.76 16 3 H 0.07 1.58 5.87 -51.93 -0.30 1.27 16 4 C 0.02 0.42 3.58 -27.88 -0.10 0.32 16 5 C -0.57 -16.29 8.84 -34.44 -0.30 -16.59 16 6 H 0.06 1.74 7.74 -52.49 -0.41 1.33 16 7 C 0.01 0.19 5.46 -17.82 -0.10 0.10 16 8 N -0.93 -28.97 13.65 55.43 0.76 -28.21 16 9 Si 1.07 26.59 29.90 -169.99 -5.08 21.51 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.49 -9.82 4.18 -218.57 -0.91 -10.73 16 14 C 0.06 1.10 4.82 -3.77 -0.02 1.08 16 15 C 0.06 0.97 5.62 -3.77 -0.02 0.95 16 16 N -0.55 -8.42 4.97 -242.76 -1.21 -9.62 16 17 C 0.03 0.34 9.60 60.06 0.58 0.91 16 18 C 0.07 1.08 4.73 -3.77 -0.02 1.06 16 19 C 0.08 1.39 1.99 -67.66 -0.13 1.26 16 20 H 0.05 0.83 6.60 -51.93 -0.34 0.49 16 21 C 0.08 1.25 6.40 37.16 0.24 1.48 16 22 O -0.55 -8.91 12.70 -35.23 -0.45 -9.36 16 23 H 0.05 0.94 6.46 -51.93 -0.34 0.61 16 24 H 0.04 0.66 6.59 -51.93 -0.34 0.31 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.01 0.18 8.01 -51.93 -0.42 -0.24 16 27 H 0.01 0.25 5.98 -51.93 -0.31 -0.06 16 28 H 0.26 8.23 7.22 -40.82 -0.29 7.93 16 29 H 0.03 0.56 6.46 -51.93 -0.34 0.23 16 30 H 0.09 1.98 6.07 -51.93 -0.32 1.67 16 31 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 1.06 8.13 -51.93 -0.42 0.64 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.97 7.51 -51.93 -0.39 0.58 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.78 5.98 -51.93 -0.31 0.47 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.37 4.22 9.12 45.56 0.42 4.63 16 LS Contribution 302.94 15.07 4.57 4.57 Total: -1.00 -32.75 302.94 -7.89 -40.64 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -5.86 Total: 1.85 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 0.30 Total: -10.64 kcal Atomic # 7 Polarization: -47.20 SS G_CDS: -1.36 Total: -48.56 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: -0.45 Total: -9.36 kcal Atomic # 14 Polarization: 26.59 SS G_CDS: -5.08 Total: 21.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -32.75 -7.89 -40.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699452324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.388 kcal (2) G-P(sol) polarization free energy of solvation -32.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds