Wall clock time and date at job start Mon Mar 30 2020 04:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47448 * 2 1 4 4 C 1.53002 * 109.46893 * 240.00120 * 2 1 3 5 5 C 1.50706 * 109.47153 * 174.99718 * 4 2 1 6 6 H 1.07998 * 119.99503 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00434 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99826 * 359.72891 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 N 1.46900 * 109.47181 * 120.00804 * 2 1 3 14 14 C 1.46957 * 111.00364 * 58.79647 * 13 2 1 15 15 C 1.53047 * 109.36634 * 176.81548 * 14 13 2 16 16 N 1.46958 * 109.36512 * 58.39976 * 15 14 13 17 17 C 1.46896 * 111.00127 * 176.81466 * 16 15 14 18 18 C 1.46957 * 110.88031 * 300.68210 * 16 15 14 19 19 C 1.46958 * 110.99655 * 294.99692 * 13 2 1 20 20 H 1.09001 * 109.49098 * 63.22305 * 19 13 2 21 21 C 1.52999 * 109.49205 * 303.15782 * 19 13 2 22 22 O 1.42901 * 109.47158 * 295.00110 * 21 19 13 23 23 H 1.08996 * 109.46870 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.46894 * 299.99661 * 1 2 3 25 25 H 1.09002 * 109.46592 * 59.99548 * 1 2 3 26 26 H 1.09004 * 109.47178 * 55.00508 * 4 2 1 27 27 H 1.08993 * 109.47411 * 295.00191 * 4 2 1 28 28 H 0.97000 * 120.00236 * 0.27947 * 8 7 5 29 29 H 1.08998 * 109.48489 * 296.78529 * 14 13 2 30 30 H 1.08995 * 109.48904 * 56.84371 * 14 13 2 31 31 H 1.09000 * 109.48823 * 298.43648 * 15 14 13 32 32 H 1.08995 * 109.50948 * 178.38166 * 15 14 13 33 33 H 1.09000 * 109.47482 * 183.80157 * 17 16 15 34 34 H 1.09004 * 109.46952 * 303.80162 * 17 16 15 35 35 H 1.09000 * 109.47317 * 63.79597 * 17 16 15 36 36 H 1.08998 * 109.48938 * 299.35168 * 18 16 15 37 37 H 1.09005 * 109.48979 * 179.29160 * 18 16 15 38 38 H 1.09005 * 109.47210 * 54.99471 * 21 19 13 39 39 H 1.08992 * 109.47502 * 175.00082 * 21 19 13 40 40 H 0.96693 * 114.00497 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5420 -0.6149 -1.3129 6 1 4.0790 -0.0861 -0.5393 7 6 4.2304 -1.1925 -2.3584 8 7 3.5768 -1.8410 -3.2976 9 14 6.0921 -1.0613 -2.4368 10 1 6.4708 0.1581 -3.1951 11 1 6.6409 -0.9780 -1.0595 12 1 6.6446 -2.2594 -3.1182 13 7 2.0197 -0.6927 1.1993 14 6 1.5252 -2.0757 1.2477 15 6 2.1201 -2.7851 2.4663 16 7 1.7490 -2.0532 3.6855 17 6 2.2387 -2.7457 4.8849 18 6 2.2436 -0.6702 3.6372 19 6 1.6486 0.0392 2.4185 20 1 0.5628 0.0683 2.5089 21 6 2.1934 1.4669 2.3426 22 8 3.6220 1.4323 2.3428 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5139 -0.8900 26 1 1.6054 -0.2616 -2.1370 27 1 1.7516 -1.7714 -1.2057 28 1 2.6101 -1.9094 -3.2568 29 1 0.4379 -2.0705 1.3247 30 1 1.8232 -2.6004 0.3400 31 1 3.2060 -2.8141 2.3760 32 1 1.7324 -3.8023 2.5206 33 1 1.8931 -2.2197 5.7748 34 1 1.8579 -3.7670 4.8956 35 1 3.3285 -2.7645 4.8741 36 1 3.3308 -0.6753 3.5601 37 1 1.9455 -0.1455 4.5449 38 1 1.8416 1.9419 1.4267 39 1 1.8437 2.0355 3.2042 40 1 4.0366 2.3046 2.2959 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699452324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:44 Heat of formation + Delta-G solvation = -62.955041 kcal Electronic energy + Delta-G solvation = -19224.183837 eV Core-core repulsion = 16458.921165 eV Total energy + Delta-G solvation = -2765.262672 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94263 -37.66816 -37.34231 -35.10913 -32.77135 -32.15328 -28.92656 -28.34089 -27.26563 -25.11545 -24.87469 -22.72905 -21.74539 -19.94262 -18.82000 -18.17389 -17.46140 -16.59687 -15.87018 -15.75036 -15.69430 -15.57867 -15.23169 -14.67397 -14.57271 -14.43991 -14.12841 -13.51865 -13.21817 -13.04696 -12.87124 -12.63400 -12.61668 -12.49413 -12.29322 -12.15831 -11.95822 -11.86628 -11.33854 -11.08909 -10.69890 -10.57467 -10.43315 -9.38785 -8.89112 -8.54349 -6.18822 1.51373 1.61313 1.79684 2.61382 2.93954 2.99239 3.29592 3.50034 3.87833 3.99834 4.03290 4.24130 4.26877 4.34006 4.38139 4.44954 4.48589 4.49752 4.59232 4.62479 4.73185 4.79070 4.88908 4.93231 4.97515 5.00565 5.05299 5.09074 5.22999 5.26846 5.54965 5.96612 6.04577 6.16119 6.36870 6.38694 6.47925 6.77082 7.03833 7.57348 8.86425 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021448 B = 0.008010 C = 0.007839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.180899 B = 3494.760241 C = 3570.958415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.100 3.900 3 H 0.069 0.931 4 C 0.020 3.980 5 C -0.568 4.568 6 H 0.047 0.953 7 C -0.047 4.047 8 N -0.950 5.950 9 Si 1.115 2.885 10 H -0.273 1.273 11 H -0.278 1.278 12 H -0.287 1.287 13 N -0.518 5.518 14 C 0.062 3.938 15 C 0.065 3.935 16 N -0.549 5.549 17 C 0.026 3.974 18 C 0.074 3.926 19 C 0.080 3.920 20 H 0.062 0.938 21 C 0.084 3.916 22 O -0.577 6.577 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.057 0.943 26 H -0.014 1.014 27 H -0.008 1.008 28 H 0.252 0.748 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.019 0.981 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.018 0.982 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.044 0.956 39 H 0.076 0.924 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.947 4.415 16.318 17.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.008 4.008 3 H 0.087 0.913 4 C -0.017 4.017 5 C -0.607 4.607 6 H 0.065 0.935 7 C -0.242 4.242 8 N -0.590 5.590 9 Si 0.939 3.061 10 H -0.199 1.199 11 H -0.204 1.204 12 H -0.213 1.213 13 N -0.242 5.242 14 C -0.066 4.066 15 C -0.063 4.063 16 N -0.273 5.273 17 C -0.121 4.121 18 C -0.054 4.054 19 C -0.029 4.029 20 H 0.080 0.920 21 C 0.006 3.994 22 O -0.383 6.383 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.076 0.924 26 H 0.004 0.996 27 H 0.010 0.990 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.037 0.963 32 H 0.109 0.891 33 H 0.103 0.897 34 H 0.096 0.904 35 H 0.037 0.963 36 H 0.045 0.955 37 H 0.113 0.887 38 H 0.062 0.938 39 H 0.094 0.906 40 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -3.725 3.349 15.494 16.283 hybrid contribution -1.307 0.787 0.261 1.547 sum -5.031 4.135 15.754 17.047 Atomic orbital electron populations 1.22418 0.97283 1.01659 1.02149 1.21520 0.91684 0.97551 0.90059 0.91291 1.19238 0.96062 0.94068 0.92345 1.22269 0.93095 1.35970 1.09318 0.93466 1.27166 1.10649 0.93555 0.92857 1.70897 1.09301 1.42844 1.35976 0.82935 0.70234 0.76861 0.76114 1.19901 1.20392 1.21270 1.62114 1.59629 1.01376 1.01107 1.22029 0.97035 0.90183 0.97365 1.22071 0.97475 0.97552 0.89210 1.62253 1.59568 1.02750 1.02755 1.22404 0.97564 0.99924 0.92245 1.22005 0.97314 0.88709 0.97359 1.21880 0.97502 0.93238 0.90243 0.92017 1.22273 0.81633 0.95159 1.00352 1.86616 1.19282 1.35011 1.97399 0.93204 0.91216 0.92356 0.99595 0.98975 0.93894 0.94101 0.92804 0.96305 0.89145 0.89682 0.90360 0.96291 0.95471 0.88700 0.93805 0.90579 0.76514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.97 8.49 71.98 0.61 -5.36 16 2 C 0.10 4.17 1.98 44.92 0.09 4.26 16 3 H 0.07 2.93 5.87 -2.39 -0.01 2.92 16 4 C 0.02 1.05 3.58 29.85 0.11 1.16 16 5 C -0.57 -33.48 8.84 25.60 0.23 -33.26 16 6 H 0.05 2.85 7.74 -2.91 -0.02 2.83 16 7 C -0.05 -2.83 5.46 84.65 0.46 -2.37 16 8 N -0.95 -60.98 13.65 21.45 0.29 -60.69 16 9 Si 1.12 53.90 29.90 68.60 2.05 55.95 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 12 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 13 N -0.52 -20.42 4.18 -845.42 -3.53 -23.95 16 14 C 0.06 2.38 4.82 86.31 0.42 2.79 16 15 C 0.07 2.17 5.62 86.31 0.49 2.65 16 16 N -0.55 -15.59 4.97 -921.96 -4.58 -20.17 16 17 C 0.03 0.58 9.60 127.69 1.23 1.81 16 18 C 0.07 2.16 4.73 86.31 0.41 2.57 16 19 C 0.08 2.48 1.99 44.92 0.09 2.57 16 20 H 0.06 1.80 6.60 -2.39 -0.02 1.79 16 21 C 0.08 2.29 6.40 71.98 0.46 2.75 16 22 O -0.58 -17.88 12.70 -148.98 -1.89 -19.78 16 23 H 0.05 1.71 6.46 -2.39 -0.02 1.70 16 24 H 0.07 1.98 6.59 -2.39 -0.02 1.97 16 25 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 26 H -0.01 -0.80 8.01 -2.39 -0.02 -0.81 16 27 H -0.01 -0.44 5.98 -2.39 -0.01 -0.46 16 28 H 0.25 16.32 7.22 -92.71 -0.67 15.65 16 29 H 0.04 1.46 6.46 -2.39 -0.02 1.45 16 30 H 0.05 2.44 6.07 -2.39 -0.01 2.42 16 31 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 2.60 8.13 -2.39 -0.02 2.58 16 33 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.08 1.51 8.13 -2.38 -0.02 1.49 16 35 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.03 0.94 7.51 -2.39 -0.02 0.92 16 37 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 38 H 0.04 1.25 5.98 -2.38 -0.01 1.24 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.39 8.25 9.12 -74.06 -0.68 7.57 16 Total: -1.00 -71.79 302.94 -2.64 -74.42 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: 0.44 Total: 14.64 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 4.58 Total: -20.43 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -7.82 Total: -104.81 kcal Atomic # 8 Polarization: -17.88 SS G_CDS: -1.89 Total: -19.78 kcal Atomic # 14 Polarization: 53.90 SS G_CDS: 2.05 Total: 55.95 kcal Total: -71.79 -2.64 -74.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699452324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.467 kcal (2) G-P(sol) polarization free energy of solvation -71.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds