Wall clock time and date at job start Mon Mar 30 2020 04:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46872 * 2 1 4 4 C 1.53000 * 109.46777 * 119.99690 * 2 1 3 5 5 C 1.50702 * 109.46800 * 186.24806 * 4 2 1 6 6 H 1.08002 * 119.99955 * 355.01024 * 5 4 2 7 7 C 1.37879 * 120.00217 * 175.00815 * 5 4 2 8 8 N 1.31514 * 119.99744 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00250 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47239 * 60.00447 * 9 7 5 11 11 H 1.48501 * 109.47419 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47452 * 300.00368 * 9 7 5 13 13 N 1.46897 * 109.47005 * 239.99696 * 2 1 3 14 14 C 1.46959 * 111.00099 * 90.90075 * 13 2 1 15 15 C 1.53044 * 109.36357 * 176.81145 * 14 13 2 16 16 N 1.46957 * 109.36532 * 58.39934 * 15 14 13 17 17 C 1.46914 * 110.99830 * 176.81049 * 16 15 14 18 18 C 1.46951 * 110.88035 * 300.67514 * 16 15 14 19 19 C 1.46954 * 111.00196 * 327.09532 * 13 2 1 20 20 H 1.09007 * 109.48773 * 63.20171 * 19 13 2 21 21 C 1.53002 * 109.49115 * 303.16174 * 19 13 2 22 22 O 1.42901 * 109.46712 * 297.87123 * 21 19 13 23 23 H 1.08999 * 109.47409 * 294.10490 * 1 2 3 24 24 H 1.09001 * 109.47261 * 54.10561 * 1 2 3 25 25 H 1.08995 * 109.47487 * 174.10479 * 1 2 3 26 26 H 1.08998 * 109.47676 * 306.24498 * 4 2 1 27 27 H 1.08998 * 109.47269 * 66.24914 * 4 2 1 28 28 H 0.96998 * 120.00527 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.48254 * 296.77753 * 14 13 2 30 30 H 1.08997 * 109.48866 * 56.83696 * 14 13 2 31 31 H 1.09000 * 109.49155 * 298.42901 * 15 14 13 32 32 H 1.09003 * 109.50756 * 178.37792 * 15 14 13 33 33 H 1.08999 * 109.46657 * 183.79750 * 17 16 15 34 34 H 1.09002 * 109.47043 * 303.79832 * 17 16 15 35 35 H 1.08996 * 109.46803 * 63.79959 * 17 16 15 36 36 H 1.09001 * 109.49236 * 299.35553 * 18 16 15 37 37 H 1.09004 * 109.48993 * 179.28747 * 18 16 15 38 38 H 1.08991 * 109.47530 * 57.87030 * 21 19 13 39 39 H 1.09005 * 109.47190 * 177.87615 * 21 19 13 40 40 H 0.96699 * 113.99831 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5390 -0.5887 1.3291 6 1 4.0828 -0.1149 0.5251 7 6 4.2163 -1.0722 2.4284 8 7 3.5542 -1.6494 3.4071 9 14 6.0745 -0.9086 2.5269 10 1 6.4482 0.5279 2.4786 11 1 6.5571 -1.5035 3.7991 12 1 6.6956 -1.6204 1.3812 13 7 2.0196 -0.6925 -1.1994 14 6 2.2155 0.2507 -2.3091 15 6 2.7998 -0.4945 -3.5114 16 7 1.8893 -1.5802 -3.9012 17 6 2.3790 -2.2728 -5.1008 18 6 1.6935 -2.5234 -2.7916 19 6 1.1092 -1.7782 -1.5892 20 1 0.1385 -1.3605 -1.8566 21 6 0.9420 -2.7493 -0.4187 22 8 2.2064 -3.3349 -0.1014 23 1 -0.3634 0.4197 0.9380 24 1 -0.3634 0.6025 -0.8325 25 1 -0.3634 -1.0222 -0.1055 26 1 1.5882 -0.2760 2.1358 27 1 1.7708 -1.7760 1.1952 28 1 4.0307 -1.9900 4.1804 29 1 1.2576 0.6915 -2.5850 30 1 2.9029 1.0381 -2.0001 31 1 3.7703 -0.9123 -3.2438 32 1 2.9192 0.1971 -4.3454 33 1 1.6535 -3.0266 -5.4066 34 1 2.5153 -1.5515 -5.9066 35 1 3.3315 -2.7541 -4.8789 36 1 2.6515 -2.9643 -2.5157 37 1 1.0060 -3.3108 -3.1005 38 1 0.5632 -2.2102 0.4495 39 1 0.2375 -3.5338 -0.6952 40 1 2.1756 -3.9630 0.6331 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699452325.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:47 Heat of formation + Delta-G solvation = -37.832790 kcal Electronic energy + Delta-G solvation = -19430.892589 eV Core-core repulsion = 16666.719300 eV Total energy + Delta-G solvation = -2764.173290 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.03478 -37.87206 -36.71926 -34.77431 -32.63902 -32.33215 -29.14709 -28.43005 -27.17637 -25.19072 -24.28474 -22.75203 -21.52834 -19.98065 -18.40076 -18.20054 -17.17627 -16.65466 -16.22180 -15.85759 -15.63749 -15.32288 -14.90701 -14.68889 -14.38897 -13.91481 -13.60133 -13.54508 -13.30664 -13.09810 -12.80320 -12.69088 -12.58533 -12.41725 -12.36202 -12.02204 -11.88653 -11.51229 -11.23608 -10.99224 -10.91446 -10.48772 -10.18402 -9.34274 -8.78509 -7.98889 -5.97166 1.41168 1.43622 1.50341 2.53134 2.99232 3.07574 3.37148 3.63771 3.95708 4.06726 4.15928 4.33582 4.38279 4.42491 4.46360 4.54413 4.55750 4.62784 4.66147 4.70176 4.82254 4.89780 4.94779 5.00228 5.01587 5.05319 5.19155 5.29756 5.41707 5.60239 5.87974 6.01098 6.08074 6.11214 6.45878 6.52072 6.66473 7.10829 7.12287 7.63785 9.12837 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.008321 C = 0.007734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.749807 B = 3364.258247 C = 3619.275857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.091 3.909 3 H 0.049 0.951 4 C 0.023 3.977 5 C -0.476 4.476 6 H 0.040 0.960 7 C 0.001 3.999 8 N -0.937 5.937 9 Si 0.942 3.058 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.281 1.281 13 N -0.523 5.523 14 C 0.057 3.943 15 C 0.063 3.937 16 N -0.549 5.549 17 C 0.026 3.974 18 C 0.073 3.927 19 C 0.093 3.907 20 H 0.065 0.935 21 C 0.068 3.932 22 O -0.561 6.561 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.072 0.928 26 H -0.019 1.019 27 H 0.047 0.953 28 H 0.254 0.746 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.020 0.980 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.017 0.983 36 H 0.024 0.976 37 H 0.088 0.912 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 -1.117 -13.950 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.017 4.017 3 H 0.067 0.933 4 C -0.014 4.014 5 C -0.514 4.514 6 H 0.058 0.942 7 C -0.194 4.194 8 N -0.580 5.580 9 Si 0.770 3.230 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.207 1.207 13 N -0.248 5.248 14 C -0.071 4.071 15 C -0.065 4.065 16 N -0.273 5.273 17 C -0.121 4.121 18 C -0.055 4.055 19 C -0.016 4.016 20 H 0.083 0.917 21 C -0.010 4.010 22 O -0.365 6.365 23 H 0.074 0.926 24 H 0.078 0.922 25 H 0.091 0.909 26 H -0.001 1.001 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.038 0.962 32 H 0.116 0.884 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.035 0.965 36 H 0.042 0.958 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.455 -0.803 -14.310 15.719 hybrid contribution 1.066 -0.252 1.079 1.537 sum -5.389 -1.055 -13.232 14.326 Atomic orbital electron populations 1.22614 0.96808 1.02673 1.01740 1.21666 0.92346 0.96319 0.91347 0.93279 1.19492 0.94498 0.97387 0.90031 1.21287 0.93950 1.34509 1.01685 0.94177 1.25574 1.01323 0.96379 0.96123 1.70036 1.36312 1.42501 1.09148 0.85860 0.82501 0.78005 0.76634 1.20159 1.21285 1.20728 1.62130 1.48023 1.10991 1.03614 1.22169 0.99621 0.94572 0.90722 1.22128 0.93336 0.93941 0.97120 1.62258 1.47464 1.12032 1.05577 1.22400 0.98481 0.99165 0.92094 1.22016 0.99808 0.94134 0.89579 1.21733 0.94727 0.91715 0.93440 0.91705 1.22638 0.85917 0.95291 0.97114 1.86643 1.31459 1.62818 1.55631 0.92624 0.92235 0.90930 1.00109 0.93524 0.93684 0.94102 0.91353 0.96199 0.88435 0.90180 0.89938 0.96466 0.95783 0.89374 0.92431 0.92260 0.77792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.95 7.86 71.98 0.57 -5.38 16 2 C 0.09 3.76 2.20 44.92 0.10 3.86 16 3 H 0.05 2.11 7.66 -2.39 -0.02 2.09 16 4 C 0.02 1.17 4.04 29.85 0.12 1.29 16 5 C -0.48 -27.42 8.86 25.60 0.23 -27.19 16 6 H 0.04 2.36 7.75 -2.91 -0.02 2.34 16 7 C 0.00 0.07 5.46 84.66 0.46 0.53 16 8 N -0.94 -56.87 13.29 21.45 0.28 -56.59 16 9 Si 0.94 46.86 29.54 68.60 2.03 48.89 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 12 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 13 N -0.52 -20.11 4.08 -845.42 -3.45 -23.56 16 14 C 0.06 1.88 5.47 86.31 0.47 2.35 16 15 C 0.06 1.83 5.62 86.31 0.49 2.32 16 16 N -0.55 -15.05 4.97 -921.92 -4.58 -19.62 16 17 C 0.03 0.56 9.60 127.69 1.23 1.79 16 18 C 0.07 2.23 4.76 86.31 0.41 2.64 16 19 C 0.09 3.06 1.73 44.92 0.08 3.14 16 20 H 0.07 1.99 6.55 -2.38 -0.02 1.97 16 21 C 0.07 2.32 5.03 71.98 0.36 2.68 16 22 O -0.56 -22.57 11.36 -148.98 -1.69 -24.27 16 23 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.06 1.72 8.09 -2.39 -0.02 1.70 16 25 H 0.07 2.25 4.21 -2.39 -0.01 2.24 16 26 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 27 H 0.05 2.39 3.41 -2.39 -0.01 2.38 16 28 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 30 H 0.07 2.30 7.98 -2.39 -0.02 2.28 16 31 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 2.29 8.13 -2.39 -0.02 2.27 16 33 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 35 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.02 0.89 7.58 -2.39 -0.02 0.87 16 37 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.06 2.15 3.61 -2.39 -0.01 2.14 16 39 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.38 13.36 9.12 -74.06 -0.68 12.68 16 Total: -1.00 -66.97 300.80 -2.56 -69.53 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: 0.34 Total: 17.59 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.51 Total: -11.97 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -7.74 Total: -99.77 kcal Atomic # 8 Polarization: -22.57 SS G_CDS: -1.69 Total: -24.27 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -66.97 -2.56 -69.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699452325.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.700 kcal (2) G-P(sol) polarization free energy of solvation -66.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds