Wall clock time and date at job start Mon Mar 30 2020 04:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46671 * 2 1 4 4 C 1.52997 * 109.46778 * 119.99541 * 2 1 3 5 5 C 1.50705 * 109.47008 * 183.35962 * 4 2 1 6 6 H 1.07996 * 119.99685 * 356.26054 * 5 4 2 7 7 C 1.37879 * 120.00127 * 176.25495 * 5 4 2 8 8 N 1.31509 * 119.99681 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99702 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47148 * 60.00388 * 9 7 5 11 11 H 1.48501 * 109.46682 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47148 * 299.99939 * 9 7 5 13 13 N 1.46897 * 109.47124 * 239.99404 * 2 1 3 14 14 C 1.46957 * 111.00218 * 299.32178 * 13 2 1 15 15 C 1.53045 * 109.36051 * 183.19195 * 14 13 2 16 16 N 1.46958 * 109.36734 * 301.59181 * 15 14 13 17 17 C 1.46898 * 111.00180 * 183.18990 * 16 15 14 18 18 C 1.46957 * 110.87531 * 59.32687 * 16 15 14 19 19 C 1.46961 * 110.99839 * 63.12182 * 13 2 1 20 20 H 1.08994 * 109.48881 * 296.77287 * 19 13 2 21 21 C 1.53005 * 109.48776 * 56.82026 * 19 13 2 22 22 O 1.42896 * 109.47143 * 64.04738 * 21 19 13 23 23 H 1.08997 * 109.47320 * 300.13144 * 1 2 3 24 24 H 1.08998 * 109.47088 * 60.13750 * 1 2 3 25 25 H 1.09000 * 109.46768 * 180.13227 * 1 2 3 26 26 H 1.09001 * 109.47412 * 303.35328 * 4 2 1 27 27 H 1.08995 * 109.47601 * 63.35779 * 4 2 1 28 28 H 0.97003 * 119.99493 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.48846 * 63.22072 * 14 13 2 30 30 H 1.09004 * 109.48631 * 303.15530 * 14 13 2 31 31 H 1.09012 * 109.48606 * 181.63380 * 15 14 13 32 32 H 1.08992 * 109.49615 * 61.56840 * 15 14 13 33 33 H 1.09001 * 109.46657 * 56.05196 * 17 16 15 34 34 H 1.09005 * 109.46855 * 176.04726 * 17 16 15 35 35 H 1.09002 * 109.47588 * 296.05108 * 17 16 15 36 36 H 1.08994 * 109.49123 * 60.64386 * 18 16 15 37 37 H 1.09004 * 109.48631 * 180.71383 * 18 16 15 38 38 H 1.09000 * 109.46844 * 184.04423 * 21 19 13 39 39 H 1.08998 * 109.46921 * 304.04746 * 21 19 13 40 40 H 0.96704 * 114.00412 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5447 -0.6495 1.2917 6 1 4.0867 -0.1936 0.4763 7 6 4.2294 -1.1657 2.3714 8 7 3.5693 -1.7211 3.3640 9 14 6.0945 -1.0762 2.4241 10 1 6.5235 0.3446 2.3734 11 1 6.5844 -1.6971 3.6810 12 1 6.6582 -1.8054 1.2599 13 7 2.0197 -0.6926 -1.1993 14 6 1.5619 -2.0888 -1.2251 15 6 2.1571 -2.7955 -2.4452 16 7 1.7478 -2.0876 -3.6662 17 6 2.2376 -2.7801 -4.8656 18 6 2.2056 -0.6914 -3.6405 19 6 1.6105 0.0155 -2.4204 20 1 0.5230 0.0145 -2.4941 21 6 2.1173 1.4582 -2.3680 22 8 3.5463 1.4613 -2.3674 23 1 -0.3634 0.5159 0.8888 24 1 -0.3633 0.5117 -0.8912 25 1 -0.3633 -1.0277 0.0024 26 1 1.6284 -0.2431 2.1382 27 1 1.7266 -1.7647 1.2199 28 1 4.0510 -2.0840 4.1238 29 1 0.4738 -2.1136 -1.2852 30 1 1.8879 -2.5952 -0.3166 31 1 1.7956 -3.8233 -2.4823 32 1 3.2445 -2.7946 -2.3715 33 1 1.8865 -3.8120 -4.8580 34 1 1.8620 -2.2750 -5.7556 35 1 3.3275 -2.7672 -4.8731 36 1 3.2936 -0.6665 -3.5803 37 1 1.8796 -0.1850 -4.5490 38 1 1.7532 2.0030 -3.2390 39 1 1.7526 1.9386 -1.4601 40 1 3.9377 2.3450 -2.3357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699452327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:51 Heat of formation + Delta-G solvation = -32.954195 kcal Electronic energy + Delta-G solvation = -19187.239452 eV Core-core repulsion = 16423.277714 eV Total energy + Delta-G solvation = -2763.961738 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.48111 -36.34654 -35.83951 -32.76709 -31.27211 -30.63556 -27.36122 -26.96532 -26.01378 -23.62030 -23.01085 -21.32421 -20.01380 -18.35061 -16.94778 -16.11605 -15.95423 -15.23758 -14.52099 -14.45850 -14.35793 -14.09467 -13.39701 -13.30435 -12.97514 -12.74094 -12.33637 -11.99889 -11.73798 -11.65947 -11.34654 -11.19933 -11.02902 -10.80104 -10.57970 -10.50431 -10.33053 -10.12143 -9.81472 -9.40543 -9.06411 -8.90763 -8.19698 -8.10487 -7.33324 -5.83271 -3.80115 3.45052 3.48081 3.53216 4.18685 4.48321 4.61838 4.68082 5.16885 5.25469 5.47407 5.52733 5.53886 5.58111 5.60704 5.73759 5.79691 5.86610 5.89909 5.92525 5.96968 6.00368 6.04648 6.22081 6.34292 6.45003 6.56564 6.68811 6.77856 7.04130 7.25138 7.29281 7.61771 7.76316 7.95732 8.03935 8.11116 8.20030 8.66070 9.28772 9.81717 11.28833 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.007986 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.775508 B = 3505.237009 C = 3609.590508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.084 3.916 3 H 0.073 0.927 4 C 0.029 3.971 5 C -0.487 4.487 6 H 0.066 0.934 7 C 0.049 3.951 8 N -0.907 5.907 9 Si 0.890 3.110 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.279 1.279 13 N -0.496 5.496 14 C 0.057 3.943 15 C 0.057 3.943 16 N -0.549 5.549 17 C 0.027 3.973 18 C 0.069 3.931 19 C 0.083 3.917 20 H 0.052 0.948 21 C 0.084 3.916 22 O -0.549 6.549 23 H 0.055 0.945 24 H 0.039 0.961 25 H 0.053 0.947 26 H 0.020 0.980 27 H 0.016 0.984 28 H 0.257 0.743 29 H 0.031 0.969 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.024 0.976 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.052 0.948 40 H 0.368 0.632 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.793 3.019 -13.651 14.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.024 4.024 3 H 0.091 0.909 4 C -0.008 4.008 5 C -0.526 4.526 6 H 0.084 0.916 7 C -0.150 4.150 8 N -0.548 5.548 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.205 1.205 13 N -0.220 5.220 14 C -0.071 4.071 15 C -0.071 4.071 16 N -0.273 5.273 17 C -0.121 4.121 18 C -0.059 4.059 19 C -0.026 4.026 20 H 0.070 0.930 21 C 0.005 3.995 22 O -0.352 6.352 23 H 0.074 0.926 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.055 0.945 39 H 0.070 0.930 40 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -4.846 2.267 -13.510 14.531 hybrid contribution 1.032 0.598 0.129 1.200 sum -3.814 2.865 -13.382 14.206 Atomic orbital electron populations 1.22548 1.00037 1.01424 1.00513 1.21969 0.89715 0.98816 0.91865 0.90925 1.19222 0.96526 0.95098 0.89930 1.21222 0.91548 1.36310 1.03507 0.91629 1.25013 0.97899 0.96105 0.95974 1.69961 1.35149 1.40802 1.08870 0.86688 0.86593 0.78044 0.76764 1.20569 1.21818 1.20478 1.62246 1.58712 1.00916 1.00141 1.22183 0.96732 0.90135 0.98048 1.22205 0.99008 0.96805 0.89034 1.62211 1.59829 1.02714 1.02582 1.22299 0.97762 0.99086 0.92988 1.22029 0.99211 0.88003 0.96704 1.21709 0.96742 0.92384 0.91760 0.93029 1.22213 0.82162 0.96106 0.98987 1.86672 1.18817 1.32340 1.97407 0.92629 0.94171 0.92835 0.96219 0.96580 0.93383 0.95134 0.88506 0.91106 0.93751 0.91729 0.91930 0.95784 0.92888 0.91683 0.94487 0.93032 0.78716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.26 8.50 37.16 0.32 -2.95 16 2 C 0.08 1.73 1.97 -67.71 -0.13 1.60 16 3 H 0.07 1.53 5.99 -51.93 -0.31 1.22 16 4 C 0.03 0.75 4.19 -27.88 -0.12 0.63 16 5 C -0.49 -13.83 8.81 -34.44 -0.30 -14.13 16 6 H 0.07 1.90 7.71 -52.49 -0.40 1.50 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.58 13.29 55.43 0.74 -26.84 16 9 Si 0.89 22.57 29.54 -169.99 -5.02 17.55 16 10 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 13 N -0.50 -9.74 4.11 -218.56 -0.90 -10.63 16 14 C 0.06 1.08 4.83 -3.77 -0.02 1.06 16 15 C 0.06 0.96 5.62 -3.77 -0.02 0.94 16 16 N -0.55 -8.40 4.97 -242.75 -1.21 -9.61 16 17 C 0.03 0.34 9.60 60.06 0.58 0.91 16 18 C 0.07 1.07 4.74 -3.76 -0.02 1.05 16 19 C 0.08 1.37 1.94 -67.65 -0.13 1.24 16 20 H 0.05 0.84 6.55 -51.93 -0.34 0.50 16 21 C 0.08 1.23 6.35 37.16 0.24 1.47 16 22 O -0.55 -8.79 12.72 -35.23 -0.45 -9.24 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.62 6.54 -51.93 -0.34 0.28 16 25 H 0.05 0.95 6.50 -51.93 -0.34 0.61 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.02 0.43 6.15 -51.93 -0.32 0.11 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.03 0.56 6.50 -51.93 -0.34 0.22 16 30 H 0.10 2.09 6.05 -51.93 -0.31 1.77 16 31 H 0.07 1.06 8.13 -51.92 -0.42 0.63 16 32 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.05 0.94 7.53 -51.93 -0.39 0.55 16 37 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.05 0.77 6.07 -51.93 -0.31 0.46 16 40 H 0.37 4.14 9.12 45.56 0.42 4.56 16 LS Contribution 304.21 15.07 4.58 4.58 Total: -1.00 -31.82 304.21 -7.90 -39.72 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.93 Total: 1.31 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 0.29 Total: -6.84 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: -1.37 Total: -47.09 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: -0.45 Total: -9.24 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.82 -7.90 -39.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699452327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.763 kcal (2) G-P(sol) polarization free energy of solvation -31.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds