Wall clock time and date at job start Mon Mar 30 2020 04:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.46671 * 2 1 4 4 C 1.52997 * 109.46778 * 119.99541 * 2 1 3 5 5 C 1.50705 * 109.47008 * 183.35962 * 4 2 1 6 6 H 1.07996 * 119.99685 * 356.26054 * 5 4 2 7 7 C 1.37879 * 120.00127 * 176.25495 * 5 4 2 8 8 N 1.31509 * 119.99681 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99702 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47148 * 60.00388 * 9 7 5 11 11 H 1.48501 * 109.46682 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47148 * 299.99939 * 9 7 5 13 13 N 1.46897 * 109.47124 * 239.99404 * 2 1 3 14 14 C 1.46957 * 111.00218 * 299.32178 * 13 2 1 15 15 C 1.53045 * 109.36051 * 183.19195 * 14 13 2 16 16 N 1.46958 * 109.36734 * 301.59181 * 15 14 13 17 17 C 1.46898 * 111.00180 * 183.18990 * 16 15 14 18 18 C 1.46957 * 110.87531 * 59.32687 * 16 15 14 19 19 C 1.46961 * 110.99839 * 63.12182 * 13 2 1 20 20 H 1.08994 * 109.48881 * 296.77287 * 19 13 2 21 21 C 1.53005 * 109.48776 * 56.82026 * 19 13 2 22 22 O 1.42896 * 109.47143 * 64.04738 * 21 19 13 23 23 H 1.08997 * 109.47320 * 300.13144 * 1 2 3 24 24 H 1.08998 * 109.47088 * 60.13750 * 1 2 3 25 25 H 1.09000 * 109.46768 * 180.13227 * 1 2 3 26 26 H 1.09001 * 109.47412 * 303.35328 * 4 2 1 27 27 H 1.08995 * 109.47601 * 63.35779 * 4 2 1 28 28 H 0.97003 * 119.99493 * 180.02562 * 8 7 5 29 29 H 1.08997 * 109.48846 * 63.22072 * 14 13 2 30 30 H 1.09004 * 109.48631 * 303.15530 * 14 13 2 31 31 H 1.09012 * 109.48606 * 181.63380 * 15 14 13 32 32 H 1.08992 * 109.49615 * 61.56840 * 15 14 13 33 33 H 1.09001 * 109.46657 * 56.05196 * 17 16 15 34 34 H 1.09005 * 109.46855 * 176.04726 * 17 16 15 35 35 H 1.09002 * 109.47588 * 296.05108 * 17 16 15 36 36 H 1.08994 * 109.49123 * 60.64386 * 18 16 15 37 37 H 1.09004 * 109.48631 * 180.71383 * 18 16 15 38 38 H 1.09000 * 109.46844 * 184.04423 * 21 19 13 39 39 H 1.08998 * 109.46921 * 304.04746 * 21 19 13 40 40 H 0.96704 * 114.00412 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 3.5447 -0.6495 1.2917 6 1 4.0867 -0.1936 0.4763 7 6 4.2294 -1.1657 2.3714 8 7 3.5693 -1.7211 3.3640 9 14 6.0945 -1.0762 2.4241 10 1 6.5235 0.3446 2.3734 11 1 6.5844 -1.6971 3.6810 12 1 6.6582 -1.8054 1.2599 13 7 2.0197 -0.6926 -1.1993 14 6 1.5619 -2.0888 -1.2251 15 6 2.1571 -2.7955 -2.4452 16 7 1.7478 -2.0876 -3.6662 17 6 2.2376 -2.7801 -4.8656 18 6 2.2056 -0.6914 -3.6405 19 6 1.6105 0.0155 -2.4204 20 1 0.5230 0.0145 -2.4941 21 6 2.1173 1.4582 -2.3680 22 8 3.5463 1.4613 -2.3674 23 1 -0.3634 0.5159 0.8888 24 1 -0.3633 0.5117 -0.8912 25 1 -0.3633 -1.0277 0.0024 26 1 1.6284 -0.2431 2.1382 27 1 1.7266 -1.7647 1.2199 28 1 4.0510 -2.0840 4.1238 29 1 0.4738 -2.1136 -1.2852 30 1 1.8879 -2.5952 -0.3166 31 1 1.7956 -3.8233 -2.4823 32 1 3.2445 -2.7946 -2.3715 33 1 1.8865 -3.8120 -4.8580 34 1 1.8620 -2.2750 -5.7556 35 1 3.3275 -2.7672 -4.8731 36 1 3.2936 -0.6665 -3.5803 37 1 1.8796 -0.1850 -4.5490 38 1 1.7532 2.0030 -3.2390 39 1 1.7526 1.9386 -1.4601 40 1 3.9377 2.3450 -2.3357 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699452327.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:50 Heat of formation + Delta-G solvation = -58.746144 kcal Electronic energy + Delta-G solvation = -19188.357875 eV Core-core repulsion = 16423.277714 eV Total energy + Delta-G solvation = -2765.080161 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86167 -37.58830 -37.23512 -34.82028 -32.76911 -32.10569 -29.28464 -28.26952 -27.20981 -25.18963 -24.78108 -22.63031 -21.54960 -19.79365 -18.35157 -18.11817 -17.35895 -16.74398 -16.29616 -15.74477 -15.67438 -15.55013 -14.81677 -14.61851 -14.51610 -14.07976 -13.91171 -13.67639 -13.31554 -13.07553 -12.80545 -12.66757 -12.53774 -12.45617 -12.39426 -12.09499 -11.95398 -11.74670 -11.24417 -11.07998 -10.90107 -10.65871 -10.43330 -9.34027 -8.81680 -8.08617 -6.12152 1.39957 1.42804 1.50681 2.47822 2.99732 3.07340 3.27198 3.56296 3.94498 4.06614 4.13860 4.31908 4.35756 4.42651 4.45845 4.52569 4.55038 4.59986 4.64686 4.66294 4.79290 4.88905 4.97184 5.00005 5.01447 5.12869 5.15973 5.23495 5.34916 5.52115 5.74819 5.92414 6.02060 6.10623 6.37433 6.47908 6.60777 7.02688 7.08471 7.53428 9.03239 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021537 B = 0.007986 C = 0.007755 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.775508 B = 3505.237009 C = 3609.590508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.094 3.906 3 H 0.069 0.931 4 C 0.036 3.964 5 C -0.493 4.493 6 H 0.057 0.943 7 C -0.005 4.005 8 N -0.940 5.940 9 Si 0.954 3.046 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.517 5.517 14 C 0.062 3.938 15 C 0.065 3.935 16 N -0.549 5.549 17 C 0.027 3.973 18 C 0.074 3.926 19 C 0.080 3.920 20 H 0.062 0.938 21 C 0.084 3.916 22 O -0.577 6.577 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.048 0.952 26 H -0.008 1.008 27 H -0.005 1.005 28 H 0.258 0.742 29 H 0.039 0.961 30 H 0.058 0.942 31 H 0.089 0.911 32 H 0.019 0.981 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.018 0.982 36 H 0.027 0.973 37 H 0.093 0.907 38 H 0.074 0.926 39 H 0.046 0.954 40 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.035 3.794 -15.805 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.014 4.014 3 H 0.087 0.913 4 C -0.002 4.002 5 C -0.532 4.532 6 H 0.075 0.925 7 C -0.200 4.200 8 N -0.583 5.583 9 Si 0.780 3.220 10 H -0.195 1.195 11 H -0.212 1.212 12 H -0.203 1.203 13 N -0.242 5.242 14 C -0.066 4.066 15 C -0.063 4.063 16 N -0.274 5.274 17 C -0.121 4.121 18 C -0.054 4.054 19 C -0.029 4.029 20 H 0.080 0.920 21 C 0.006 3.994 22 O -0.383 6.383 23 H 0.076 0.924 24 H 0.086 0.914 25 H 0.067 0.933 26 H 0.011 0.989 27 H 0.014 0.986 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.037 0.963 33 H 0.096 0.904 34 H 0.102 0.898 35 H 0.037 0.963 36 H 0.045 0.955 37 H 0.111 0.889 38 H 0.092 0.908 39 H 0.064 0.936 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -5.086 3.064 -15.685 16.771 hybrid contribution 1.097 0.357 0.764 1.384 sum -3.989 3.421 -14.920 15.818 Atomic orbital electron populations 1.22402 0.97454 1.01570 1.01990 1.21641 0.91694 0.97681 0.90341 0.91296 1.19075 0.95230 0.94227 0.91619 1.21457 0.93064 1.35659 1.03012 0.92524 1.25813 1.02569 0.95909 0.95748 1.70084 1.36905 1.41806 1.09485 0.85671 0.81069 0.78434 0.76791 1.19513 1.21215 1.20311 1.62141 1.59672 1.01318 1.01056 1.22037 0.97155 0.89993 0.97463 1.22082 0.97253 0.97758 0.89237 1.62255 1.59693 1.02737 1.02706 1.22399 0.97520 0.99893 0.92313 1.22010 0.97565 0.88412 0.97418 1.21878 0.97415 0.93297 0.90320 0.92049 1.22265 0.81638 0.95111 1.00381 1.86617 1.19762 1.34400 1.97523 0.92401 0.91385 0.93316 0.98932 0.98648 0.93343 0.94293 0.92316 0.89276 0.96269 0.90432 0.89768 0.96334 0.95478 0.88851 0.90764 0.93626 0.76569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.96 8.50 71.98 0.61 -5.35 16 2 C 0.09 3.91 1.97 44.92 0.09 4.00 16 3 H 0.07 2.90 5.99 -2.39 -0.01 2.88 16 4 C 0.04 1.89 4.19 29.85 0.13 2.01 16 5 C -0.49 -28.74 8.81 25.60 0.23 -28.52 16 6 H 0.06 3.35 7.71 -2.91 -0.02 3.33 16 7 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 8 N -0.94 -58.64 13.29 21.45 0.28 -58.35 16 9 Si 0.95 46.93 29.54 68.60 2.03 48.96 16 10 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 12 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 13 N -0.52 -20.20 4.11 -845.41 -3.47 -23.67 16 14 C 0.06 2.36 4.83 86.31 0.42 2.78 16 15 C 0.07 2.15 5.62 86.31 0.49 2.64 16 16 N -0.55 -15.62 4.97 -921.93 -4.58 -20.20 16 17 C 0.03 0.59 9.60 127.69 1.23 1.81 16 18 C 0.07 2.14 4.74 86.31 0.41 2.55 16 19 C 0.08 2.45 1.94 44.92 0.09 2.54 16 20 H 0.06 1.79 6.55 -2.39 -0.02 1.78 16 21 C 0.08 2.26 6.35 71.98 0.46 2.72 16 22 O -0.58 -17.58 12.72 -148.98 -1.90 -19.48 16 23 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 1.93 6.54 -2.39 -0.02 1.92 16 25 H 0.05 1.69 6.50 -2.39 -0.02 1.67 16 26 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 27 H 0.00 -0.27 6.15 -2.39 -0.01 -0.28 16 28 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.04 1.40 6.50 -2.39 -0.02 1.39 16 30 H 0.06 2.66 6.05 -2.39 -0.01 2.64 16 31 H 0.09 2.57 8.13 -2.38 -0.02 2.55 16 32 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 1.51 8.13 -2.39 -0.02 1.49 16 34 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 35 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.03 0.93 7.53 -2.39 -0.02 0.91 16 37 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.05 1.27 6.07 -2.39 -0.01 1.26 16 40 H 0.39 8.06 9.12 -74.05 -0.68 7.38 16 Total: -1.00 -69.48 304.21 -2.70 -72.19 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 0.34 Total: 13.19 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 4.60 Total: -12.63 kcal Atomic # 7 Polarization: -94.45 SS G_CDS: -7.77 Total: -102.22 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -1.90 Total: -19.48 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -69.48 -2.70 -72.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699452327.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.442 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds