Wall clock time and date at job start Mon Mar 30 2020 05:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 C 1.50705 * 109.47033 * 239.99535 * 2 1 3 5 5 H 1.07992 * 120.00459 * 267.50299 * 4 2 1 6 6 C 1.37877 * 119.99634 * 87.49830 * 4 2 1 7 7 N 1.31521 * 120.00083 * 358.73967 * 6 4 2 8 8 Si 1.86798 * 119.99969 * 178.74210 * 6 4 2 9 9 H 1.48504 * 109.46987 * 269.99970 * 8 6 4 10 10 H 1.48497 * 109.47306 * 30.00059 * 8 6 4 11 11 H 1.48504 * 109.47295 * 150.00023 * 8 6 4 12 12 N 1.46901 * 109.47370 * 120.00187 * 2 1 3 13 13 C 1.46893 * 111.00373 * 176.04620 * 12 2 1 14 14 C 1.46909 * 110.99662 * 299.99764 * 12 2 1 15 15 H 1.08998 * 109.46707 * 47.44694 * 14 12 2 16 16 C 1.52999 * 109.46842 * 287.44426 * 14 12 2 17 17 C 1.53000 * 109.46896 * 167.44267 * 14 12 2 18 18 H 1.08999 * 109.50454 * 186.61626 * 17 14 12 19 19 C 1.53093 * 109.51029 * 306.74578 * 17 14 12 20 20 N 1.47007 * 109.26186 * 176.78394 * 19 17 14 21 21 C 1.47018 * 110.75275 * 301.38375 * 20 19 17 22 22 C 1.53098 * 109.25434 * 58.61365 * 21 20 19 23 23 O 1.43016 * 109.26178 * 303.14987 * 22 21 20 24 24 H 1.09002 * 109.47305 * 186.81134 * 1 2 3 25 25 H 1.09003 * 109.46828 * 306.80839 * 1 2 3 26 26 H 1.09001 * 109.47574 * 66.80742 * 1 2 3 27 27 H 0.96999 * 120.00046 * 354.23063 * 7 6 4 28 28 H 1.08998 * 109.47515 * 69.34227 * 13 12 2 29 29 H 1.08996 * 109.47402 * 189.34595 * 13 12 2 30 30 H 1.09005 * 109.46902 * 309.34019 * 13 12 2 31 31 H 1.09002 * 109.47229 * 299.99525 * 16 14 12 32 32 H 1.08997 * 109.46963 * 60.00091 * 16 14 12 33 33 H 1.09006 * 109.46523 * 180.02562 * 16 14 12 34 34 H 1.09002 * 109.50675 * 296.71967 * 19 17 14 35 35 H 1.09009 * 109.50930 * 56.84798 * 19 17 14 36 36 H 1.00897 * 111.00160 * 65.15637 * 20 19 17 37 37 H 1.08992 * 109.50964 * 298.68126 * 21 20 19 38 38 H 1.08997 * 109.50702 * 178.54466 * 21 20 19 39 39 H 1.09001 * 109.50352 * 183.21489 * 22 21 20 40 40 H 1.09000 * 109.51019 * 63.08761 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.2507 -1.7675 -1.1924 6 6 2.2129 -0.0111 -2.4049 7 7 1.9233 1.2707 -2.4581 8 14 2.8689 -0.8842 -3.9204 9 1 4.3516 -0.8037 -3.9350 10 1 2.4506 -2.3087 -3.8910 11 1 2.3258 -0.2340 -5.1401 12 7 2.0197 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1870 14 6 1.5487 -0.0263 2.4211 15 1 0.4804 0.1732 2.3372 16 6 2.3012 1.2931 2.6049 17 6 1.8051 -0.9322 3.6272 18 1 1.3519 -0.4924 4.5155 19 6 1.1933 -2.3117 3.3697 20 7 1.5090 -3.2004 4.4974 21 6 2.9635 -3.3193 4.6756 22 6 3.5575 -1.9296 4.9200 23 8 3.2142 -1.0712 3.8288 24 1 -0.3634 -1.0204 0.1219 25 1 -0.3633 0.6157 0.8228 26 1 -0.3634 0.4047 -0.9446 27 1 1.5049 1.7053 -1.6985 28 1 3.9194 0.1954 1.3263 29 1 3.8104 -1.4509 1.9941 30 1 3.8126 -1.2040 0.2314 31 1 3.3695 1.0934 2.6888 32 1 2.1185 1.9383 1.7457 33 1 1.9520 1.7871 3.5117 34 1 0.1118 -2.2178 3.2721 35 1 1.6075 -2.7280 2.4513 36 1 1.0659 -2.8799 5.3454 37 1 3.4060 -3.7516 3.7782 38 1 3.1741 -3.9607 5.5313 39 1 4.6422 -2.0057 4.9959 40 1 3.1552 -1.5195 5.8463 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699712437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:59 Heat of formation + Delta-G solvation = -34.468013 kcal Electronic energy + Delta-G solvation = -19302.103425 eV Core-core repulsion = 16538.076043 eV Total energy + Delta-G solvation = -2764.027382 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.81951 -37.29253 -34.36978 -33.45756 -31.26114 -29.42146 -28.92323 -26.27706 -24.77558 -24.05366 -23.64483 -21.43086 -20.93169 -18.76634 -16.70146 -16.30848 -16.20643 -15.39444 -14.86181 -14.74015 -14.55763 -13.72262 -13.54938 -13.28761 -12.83361 -12.52886 -12.28998 -11.66972 -11.59012 -11.38376 -11.15241 -11.13730 -10.97930 -10.88187 -10.79851 -10.68713 -10.46056 -10.31827 -10.08185 -9.90859 -9.42165 -8.44203 -8.34484 -8.13036 -7.11023 -6.30200 -4.01587 3.45760 3.49163 3.65039 3.90388 4.26595 4.53972 4.81374 4.95204 5.02505 5.12405 5.31320 5.40406 5.41932 5.49232 5.63510 5.74745 5.76849 5.91322 5.97548 6.15692 6.31511 6.44671 6.48771 6.54782 6.57410 6.73276 6.87442 6.90532 6.94470 7.10721 7.22650 7.32792 7.37414 7.51064 7.97705 8.14424 8.47165 8.66521 8.93196 9.70043 11.06255 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032625 B = 0.006857 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.035854 B = 4082.530110 C = 4286.101133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.190 3.810 3 H 0.006 0.994 4 C -0.577 4.577 5 H 0.056 0.944 6 C 0.018 3.982 7 N -0.917 5.917 8 Si 1.069 2.931 9 H -0.289 1.289 10 H -0.288 1.288 11 H -0.286 1.286 12 N -0.520 5.520 13 C 0.034 3.966 14 C 0.083 3.917 15 H 0.088 0.912 16 C -0.179 4.179 17 C 0.068 3.932 18 H 0.046 0.954 19 C 0.035 3.965 20 N -0.686 5.686 21 C 0.023 3.977 22 C 0.019 3.981 23 O -0.361 6.361 24 H 0.045 0.955 25 H 0.015 0.985 26 H 0.048 0.952 27 H 0.268 0.732 28 H 0.011 0.989 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.043 0.957 34 H 0.078 0.922 35 H 0.106 0.894 36 H 0.332 0.668 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.093 0.907 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.634 -4.872 14.261 15.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.084 3.916 3 H 0.024 0.976 4 C -0.616 4.616 5 H 0.074 0.926 6 C -0.186 4.186 7 N -0.553 5.553 8 Si 0.898 3.102 9 H -0.216 1.216 10 H -0.214 1.214 11 H -0.212 1.212 12 N -0.244 5.244 13 C -0.114 4.114 14 C -0.027 4.027 15 H 0.106 0.894 16 C -0.238 4.238 17 C 0.008 3.992 18 H 0.064 0.936 19 C -0.094 4.094 20 N -0.314 5.314 21 C -0.107 4.107 22 C -0.060 4.060 23 O -0.280 6.280 24 H 0.064 0.936 25 H 0.034 0.966 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.125 0.875 36 H 0.148 0.852 37 H 0.102 0.898 38 H 0.096 0.904 39 H 0.111 0.889 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.993 -5.621 12.170 13.443 hybrid contribution -0.144 1.482 2.248 2.696 sum 0.850 -4.140 14.418 15.025 Atomic orbital electron populations 1.21941 0.98913 0.99474 0.98594 1.19470 0.91145 0.93104 0.87893 0.97615 1.21868 1.47522 0.97231 0.94933 0.92603 1.25784 0.95761 0.95854 1.01215 1.70759 1.39990 1.10115 1.34481 0.83543 0.76334 0.74802 0.75528 1.21587 1.21403 1.21218 1.62352 1.10535 1.50654 1.00817 1.22394 0.87891 0.99148 1.01998 1.21719 0.99589 0.90941 0.90470 0.89416 1.22332 1.02339 0.98381 1.00714 1.22862 0.82142 0.97006 0.97183 0.93634 1.22622 1.00935 0.90451 0.95399 1.60924 1.09061 1.52994 1.08437 1.22618 0.88809 0.96289 1.02993 1.23215 1.01169 0.91750 0.89849 1.88231 1.22915 1.66836 1.50009 0.93560 0.96606 0.93278 0.92052 0.97024 0.91685 0.91081 0.91396 0.92557 0.93803 0.90346 0.87530 0.85198 0.89779 0.90415 0.88933 0.94052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.72 37.16 0.32 -2.65 16 2 C 0.19 4.68 1.56 -68.86 -0.11 4.57 16 3 H 0.01 0.17 5.38 -51.93 -0.28 -0.11 16 4 C -0.58 -15.86 6.87 -34.44 -0.24 -16.10 16 5 H 0.06 1.58 7.64 -52.49 -0.40 1.18 16 6 C 0.02 0.50 5.46 -17.82 -0.10 0.40 16 7 N -0.92 -27.44 13.59 55.43 0.75 -26.69 16 8 Si 1.07 25.33 29.90 -169.99 -5.08 20.25 16 9 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 N -0.52 -10.96 3.45 -228.30 -0.79 -11.75 16 13 C 0.03 0.71 8.29 60.06 0.50 1.21 16 14 C 0.08 1.48 2.25 -67.71 -0.15 1.33 16 15 H 0.09 1.56 5.87 -51.93 -0.30 1.25 16 16 C -0.18 -3.17 8.19 37.16 0.30 -2.87 16 17 C 0.07 1.02 2.63 -26.68 -0.07 0.95 16 18 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 19 C 0.04 0.52 5.87 -3.72 -0.02 0.50 16 20 N -0.69 -8.62 6.93 -113.50 -0.79 -9.41 16 21 C 0.02 0.26 6.76 -3.71 -0.03 0.24 16 22 C 0.02 0.22 7.00 37.21 0.26 0.48 16 23 O -0.36 -5.56 6.43 -35.23 -0.23 -5.79 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.02 0.31 6.52 -51.93 -0.34 -0.03 16 26 H 0.05 1.19 8.13 -51.93 -0.42 0.77 16 27 H 0.27 8.02 6.70 -40.82 -0.27 7.74 16 28 H 0.01 0.25 5.86 -51.93 -0.30 -0.06 16 29 H 0.06 1.27 5.62 -51.93 -0.29 0.98 16 30 H 0.07 1.66 6.53 -51.93 -0.34 1.32 16 31 H 0.07 1.26 5.60 -51.93 -0.29 0.97 16 32 H 0.06 1.10 6.79 -51.93 -0.35 0.75 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.11 1.91 7.33 -51.92 -0.38 1.53 16 36 H 0.33 3.53 8.89 -39.29 -0.35 3.18 16 37 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 297.21 15.07 4.48 4.48 Total: -1.00 -29.40 297.21 -7.48 -36.88 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -6.51 Total: 3.97 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: 0.68 Total: -11.94 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: -0.82 Total: -47.84 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.23 Total: -5.79 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.08 Total: 20.25 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.40 -7.48 -36.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699712437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.413 kcal (2) G-P(sol) polarization free energy of solvation -29.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds