Wall clock time and date at job start Mon Mar 30 2020 05:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08997 * 109.47245 * 2 1 4 4 C 1.50705 * 109.47033 * 239.99535 * 2 1 3 5 5 H 1.07992 * 120.00459 * 267.50299 * 4 2 1 6 6 C 1.37877 * 119.99634 * 87.49830 * 4 2 1 7 7 N 1.31521 * 120.00083 * 358.73967 * 6 4 2 8 8 Si 1.86798 * 119.99969 * 178.74210 * 6 4 2 9 9 H 1.48504 * 109.46987 * 269.99970 * 8 6 4 10 10 H 1.48497 * 109.47306 * 30.00059 * 8 6 4 11 11 H 1.48504 * 109.47295 * 150.00023 * 8 6 4 12 12 N 1.46901 * 109.47370 * 120.00187 * 2 1 3 13 13 C 1.46893 * 111.00373 * 176.04620 * 12 2 1 14 14 C 1.46909 * 110.99662 * 299.99764 * 12 2 1 15 15 H 1.08998 * 109.46707 * 47.44694 * 14 12 2 16 16 C 1.52999 * 109.46842 * 287.44426 * 14 12 2 17 17 C 1.53000 * 109.46896 * 167.44267 * 14 12 2 18 18 H 1.08999 * 109.50454 * 186.61626 * 17 14 12 19 19 C 1.53093 * 109.51029 * 306.74578 * 17 14 12 20 20 N 1.47007 * 109.26186 * 176.78394 * 19 17 14 21 21 C 1.47018 * 110.75275 * 301.38375 * 20 19 17 22 22 C 1.53098 * 109.25434 * 58.61365 * 21 20 19 23 23 O 1.43016 * 109.26178 * 303.14987 * 22 21 20 24 24 H 1.09002 * 109.47305 * 186.81134 * 1 2 3 25 25 H 1.09003 * 109.46828 * 306.80839 * 1 2 3 26 26 H 1.09001 * 109.47574 * 66.80742 * 1 2 3 27 27 H 0.96999 * 120.00046 * 354.23063 * 7 6 4 28 28 H 1.08998 * 109.47515 * 69.34227 * 13 12 2 29 29 H 1.08996 * 109.47402 * 189.34595 * 13 12 2 30 30 H 1.09005 * 109.46902 * 309.34019 * 13 12 2 31 31 H 1.09002 * 109.47229 * 299.99525 * 16 14 12 32 32 H 1.08997 * 109.46963 * 60.00091 * 16 14 12 33 33 H 1.09006 * 109.46523 * 180.02562 * 16 14 12 34 34 H 1.09002 * 109.50675 * 296.71967 * 19 17 14 35 35 H 1.09009 * 109.50930 * 56.84798 * 19 17 14 36 36 H 1.00897 * 111.00160 * 65.15637 * 20 19 17 37 37 H 1.08992 * 109.50964 * 298.68126 * 21 20 19 38 38 H 1.08997 * 109.50702 * 178.54466 * 21 20 19 39 39 H 1.09001 * 109.50352 * 183.21489 * 22 21 20 40 40 H 1.09000 * 109.51019 * 63.08761 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.2507 -1.7675 -1.1924 6 6 2.2129 -0.0111 -2.4049 7 7 1.9233 1.2707 -2.4581 8 14 2.8689 -0.8842 -3.9204 9 1 4.3516 -0.8037 -3.9350 10 1 2.4506 -2.3087 -3.8910 11 1 2.3258 -0.2340 -5.1401 12 7 2.0197 -0.6925 1.1994 13 6 3.4850 -0.7946 1.1870 14 6 1.5487 -0.0263 2.4211 15 1 0.4804 0.1732 2.3372 16 6 2.3012 1.2931 2.6049 17 6 1.8051 -0.9322 3.6272 18 1 1.3519 -0.4924 4.5155 19 6 1.1933 -2.3117 3.3697 20 7 1.5090 -3.2004 4.4974 21 6 2.9635 -3.3193 4.6756 22 6 3.5575 -1.9296 4.9200 23 8 3.2142 -1.0712 3.8288 24 1 -0.3634 -1.0204 0.1219 25 1 -0.3633 0.6157 0.8228 26 1 -0.3634 0.4047 -0.9446 27 1 1.5049 1.7053 -1.6985 28 1 3.9194 0.1954 1.3263 29 1 3.8104 -1.4509 1.9941 30 1 3.8126 -1.2040 0.2314 31 1 3.3695 1.0934 2.6888 32 1 2.1185 1.9383 1.7457 33 1 1.9520 1.7871 3.5117 34 1 0.1118 -2.2178 3.2721 35 1 1.6075 -2.7280 2.4513 36 1 1.0659 -2.8799 5.3454 37 1 3.4060 -3.7516 3.7782 38 1 3.1741 -3.9607 5.5313 39 1 4.6422 -2.0057 4.9959 40 1 3.1552 -1.5195 5.8463 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699712437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:26:58 Heat of formation + Delta-G solvation = -55.790821 kcal Electronic energy + Delta-G solvation = -19303.028051 eV Core-core repulsion = 16538.076043 eV Total energy + Delta-G solvation = -2764.952008 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.04678 -38.85433 -35.59026 -35.20904 -32.81902 -31.07125 -30.44260 -27.50845 -26.76341 -25.76428 -24.79493 -23.05382 -22.15656 -20.37375 -18.66679 -17.71565 -17.30989 -16.59825 -16.29567 -16.15034 -15.67633 -15.60912 -15.18401 -14.85750 -14.39998 -13.87261 -13.59877 -13.32633 -13.18806 -12.99857 -12.80252 -12.72509 -12.51813 -12.38115 -12.22750 -12.07852 -12.03989 -11.93168 -11.89047 -11.52969 -10.80566 -10.53777 -10.41217 -9.18349 -8.87257 -8.53398 -6.26626 1.52648 1.60656 1.78529 2.57360 2.82192 3.16036 3.28206 3.37317 3.82248 3.91105 4.12051 4.18291 4.25314 4.31952 4.42064 4.51598 4.60383 4.62273 4.68525 4.74910 4.78700 4.81821 4.85490 4.92213 5.03196 5.06369 5.23012 5.31014 5.34428 5.40122 5.59700 5.90959 6.02185 6.08311 6.28222 6.47076 6.52397 6.58063 6.83051 7.52489 8.81388 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.032625 B = 0.006857 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.035854 B = 4082.530110 C = 4286.101133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.192 3.808 3 H -0.026 1.026 4 C -0.581 4.581 5 H 0.045 0.955 6 C -0.031 4.031 7 N -0.943 5.943 8 Si 1.112 2.888 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.285 1.285 12 N -0.518 5.518 13 C 0.047 3.953 14 C 0.079 3.921 15 H 0.092 0.908 16 C -0.170 4.170 17 C 0.077 3.923 18 H 0.072 0.928 19 C 0.044 3.956 20 N -0.688 5.688 21 C 0.025 3.975 22 C 0.017 3.983 23 O -0.387 6.387 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.025 0.975 27 H 0.256 0.744 28 H 0.001 0.999 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.057 0.943 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.347 0.653 37 H 0.063 0.937 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.549 -5.923 16.301 17.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.085 3.915 3 H -0.008 1.008 4 C -0.619 4.619 5 H 0.063 0.937 6 C -0.229 4.229 7 N -0.581 5.581 8 Si 0.935 3.065 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.211 1.211 12 N -0.241 5.241 13 C -0.101 4.101 14 C -0.031 4.031 15 H 0.109 0.891 16 C -0.229 4.229 17 C 0.018 3.982 18 H 0.089 0.911 19 C -0.086 4.086 20 N -0.317 5.317 21 C -0.105 4.105 22 C -0.061 4.061 23 O -0.306 6.306 24 H 0.070 0.930 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.019 0.981 29 H 0.103 0.897 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.047 0.953 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.165 0.835 37 H 0.082 0.918 38 H 0.125 0.875 39 H 0.124 0.876 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.906 -6.687 14.254 15.771 hybrid contribution -0.097 1.777 1.746 2.493 sum 0.809 -4.910 16.000 16.756 Atomic orbital electron populations 1.21743 0.97351 1.00128 0.98435 1.19317 0.92265 0.91247 0.88672 1.00814 1.22128 1.46795 0.96769 0.96246 0.93715 1.27086 0.95753 0.95819 1.04244 1.70875 1.41865 1.11140 1.34214 0.82985 0.76434 0.74614 0.72454 1.20409 1.19713 1.21093 1.62287 1.10250 1.50571 1.01023 1.22257 0.88086 0.98697 1.01054 1.21860 0.99597 0.91562 0.90079 0.89060 1.22225 1.01767 0.98034 1.00827 1.22713 0.82584 0.96503 0.96441 0.91074 1.22389 1.00863 0.90420 0.94951 1.60859 1.09989 1.52298 1.08544 1.22641 0.87912 0.96665 1.03253 1.23417 1.02181 0.91124 0.89366 1.88157 1.22828 1.67823 1.51792 0.93000 0.93912 0.95592 0.93342 0.98053 0.89707 0.93987 0.92371 0.95338 0.90899 0.89907 0.91044 0.83457 0.91807 0.87550 0.87617 0.92071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.72 71.98 0.63 -4.77 16 2 C 0.19 9.67 1.56 44.17 0.07 9.73 16 3 H -0.03 -1.45 5.38 -2.39 -0.01 -1.46 16 4 C -0.58 -32.68 6.87 25.60 0.18 -32.50 16 5 H 0.04 2.57 7.64 -2.91 -0.02 2.55 16 6 C -0.03 -1.80 5.46 84.65 0.46 -1.34 16 7 N -0.94 -57.96 13.59 21.45 0.29 -57.67 16 8 Si 1.11 51.43 29.90 68.60 2.05 53.48 16 9 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 10 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 11 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 12 N -0.52 -21.94 3.45 -876.20 -3.02 -24.96 16 13 C 0.05 2.03 8.29 127.69 1.06 3.09 16 14 C 0.08 2.70 2.25 44.91 0.10 2.80 16 15 H 0.09 3.07 5.87 -2.39 -0.01 3.06 16 16 C -0.17 -5.88 8.19 71.98 0.59 -5.29 16 17 C 0.08 2.14 2.63 30.63 0.08 2.22 16 18 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 19 C 0.04 1.21 5.87 86.31 0.51 1.71 16 20 N -0.69 -15.29 6.93 -513.01 -3.55 -18.84 16 21 C 0.02 0.50 6.76 86.31 0.58 1.08 16 22 C 0.02 0.34 7.00 72.01 0.50 0.85 16 23 O -0.39 -11.00 6.43 -148.98 -0.96 -11.95 16 24 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 25 H 0.04 1.68 6.52 -2.39 -0.02 1.67 16 26 H 0.02 1.26 8.13 -2.39 -0.02 1.24 16 27 H 0.26 15.94 6.70 -92.71 -0.62 15.32 16 28 H 0.00 0.05 5.86 -2.39 -0.01 0.03 16 29 H 0.08 3.30 5.62 -2.39 -0.01 3.28 16 30 H 0.04 2.01 6.53 -2.38 -0.02 2.00 16 31 H 0.06 2.12 5.60 -2.39 -0.01 2.10 16 32 H 0.03 1.12 6.79 -2.39 -0.02 1.10 16 33 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.07 2.51 7.33 -2.38 -0.02 2.49 16 36 H 0.35 6.06 8.89 -89.70 -0.80 5.27 16 37 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -64.67 297.21 -0.06 -64.73 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.37 Total: 17.64 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 4.76 Total: -22.42 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -6.28 Total: -101.47 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.96 Total: -11.95 kcal Atomic # 14 Polarization: 51.43 SS G_CDS: 2.05 Total: 53.48 kcal Total: -64.67 -0.06 -64.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699712437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.935 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds