Wall clock time and date at job start Mon Mar 30 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46713 * 2 1 4 4 C 1.50697 * 109.47265 * 240.00242 * 2 1 3 5 5 H 1.07997 * 120.00159 * 239.99696 * 4 2 1 6 6 C 1.37881 * 120.00209 * 59.99877 * 4 2 1 7 7 N 1.31516 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00298 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47003 * 59.99585 * 8 6 4 10 10 H 1.48497 * 109.47121 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46772 * 299.99938 * 8 6 4 12 12 N 1.46893 * 109.46966 * 120.00009 * 2 1 3 13 13 C 1.46898 * 111.00042 * 58.95726 * 12 2 1 14 14 C 1.46899 * 111.00255 * 295.00224 * 12 2 1 15 15 H 1.09000 * 109.47162 * 59.99933 * 14 12 2 16 16 C 1.53006 * 109.47163 * 299.99972 * 14 12 2 17 17 C 1.52999 * 109.47248 * 180.02562 * 14 12 2 18 18 H 1.09001 * 109.50253 * 305.08213 * 17 14 12 19 19 C 1.53099 * 109.50890 * 185.00039 * 17 14 12 20 20 N 1.47013 * 109.26040 * 183.21158 * 19 17 14 21 21 C 1.47018 * 110.75061 * 58.61610 * 20 19 17 22 22 C 1.53095 * 109.25655 * 301.38468 * 21 20 19 23 23 O 1.43009 * 109.50918 * 65.21447 * 17 14 12 24 24 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47434 * 299.99764 * 1 2 3 26 26 H 1.09001 * 109.47175 * 59.99686 * 1 2 3 27 27 H 0.96998 * 120.00369 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47309 * 296.04539 * 13 12 2 29 29 H 1.08998 * 109.47470 * 56.04639 * 13 12 2 30 30 H 1.09007 * 109.47247 * 176.04588 * 13 12 2 31 31 H 1.09001 * 109.47002 * 59.99764 * 16 14 12 32 32 H 1.08993 * 109.46955 * 180.02562 * 16 14 12 33 33 H 1.09000 * 109.47050 * 300.00030 * 16 14 12 34 34 H 1.09001 * 109.50689 * 303.14936 * 19 17 14 35 35 H 1.09003 * 109.50392 * 63.23315 * 19 17 14 36 36 H 1.00894 * 110.99918 * 294.83986 * 20 19 17 37 37 H 1.08996 * 109.50488 * 61.32075 * 21 20 19 38 38 H 1.09000 * 109.50423 * 181.40580 * 21 20 19 39 39 H 1.09003 * 109.50653 * 176.78740 * 22 21 20 40 40 H 1.09007 * 109.50486 * 296.91449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5200 -4.0078 10 1 1.8270 -0.4197 -5.2204 11 1 3.8065 -1.1207 -4.0082 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6486 0.0391 2.4180 15 1 0.5631 0.1176 2.4784 16 6 2.2598 1.4412 2.3772 17 6 2.1752 -0.7107 3.6433 18 1 1.8122 -1.7384 3.6248 19 6 1.6837 -0.0179 4.9170 20 7 2.2551 -0.6963 6.0894 21 6 3.7243 -0.6749 6.0389 22 6 4.1953 -1.3612 4.7539 23 8 3.6052 -0.7081 3.6267 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7081 1.1609 -3.4844 28 1 0.4419 -2.0731 1.3346 29 1 1.8167 -2.5950 0.3318 30 1 1.9617 -2.5869 2.1058 31 1 1.8851 1.9756 1.5043 32 1 1.9849 1.9838 3.2816 33 1 3.3453 1.3627 2.3168 34 1 2.0006 1.0250 4.9095 35 1 0.5957 -0.0673 4.9615 36 1 1.9096 -1.6412 6.1644 37 1 4.0738 0.3574 6.0493 38 1 4.1259 -1.2040 6.9031 39 1 5.2812 -1.2974 4.6843 40 1 3.8917 -2.4080 4.7681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699712438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:02 Heat of formation + Delta-G solvation = -28.644773 kcal Electronic energy + Delta-G solvation = -19007.825820 eV Core-core repulsion = 16244.050953 eV Total energy + Delta-G solvation = -2763.774867 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.76677 -37.31632 -34.34542 -33.33880 -31.68295 -29.27505 -28.64189 -25.94921 -25.19853 -24.28507 -23.93454 -21.85721 -20.44019 -18.47960 -16.49018 -16.18058 -16.00009 -15.63499 -14.97619 -14.88050 -14.54848 -14.02719 -13.36404 -13.06283 -12.90573 -12.61284 -12.22652 -11.82706 -11.67381 -11.39684 -11.22712 -11.04821 -11.00083 -10.92709 -10.74938 -10.57328 -10.51969 -10.28716 -9.98990 -9.93840 -9.42814 -8.80572 -8.32085 -8.20736 -7.02551 -5.96832 -3.99642 3.35081 3.39099 3.42480 3.95501 4.12086 4.43752 4.71852 4.94422 5.04243 5.18021 5.20044 5.34193 5.37109 5.41704 5.58111 5.68068 5.82376 5.90938 5.98366 6.11076 6.19135 6.32644 6.44467 6.58911 6.71038 6.75783 6.84081 6.91815 6.94840 7.16978 7.17822 7.42157 7.57700 7.75659 7.88990 8.20891 8.44777 8.67515 9.06093 9.64766 11.10364 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042410 B = 0.005972 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.069731 B = 4687.485457 C = 4923.154560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.208 3.792 3 H 0.047 0.953 4 C -0.498 4.498 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.277 1.277 12 N -0.521 5.521 13 C 0.034 3.966 14 C 0.090 3.910 15 H 0.045 0.955 16 C -0.139 4.139 17 C 0.061 3.939 18 H 0.056 0.944 19 C 0.022 3.978 20 N -0.684 5.684 21 C 0.020 3.980 22 C 0.019 3.981 23 O -0.348 6.348 24 H 0.028 0.972 25 H 0.007 0.993 26 H 0.088 0.912 27 H 0.260 0.740 28 H 0.013 0.987 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.337 0.663 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.859 -2.939 14.577 14.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.102 3.898 3 H 0.064 0.936 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.245 5.245 13 C -0.115 4.115 14 C -0.019 4.019 15 H 0.063 0.937 16 C -0.196 4.196 17 C 0.001 3.999 18 H 0.073 0.927 19 C -0.108 4.108 20 N -0.313 5.313 21 C -0.110 4.110 22 C -0.060 4.060 23 O -0.266 6.266 24 H 0.047 0.953 25 H 0.026 0.974 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.031 0.969 29 H 0.093 0.907 30 H 0.058 0.942 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.154 0.846 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.113 0.887 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.360 -2.176 14.677 15.024 hybrid contribution -0.616 -1.305 -1.337 1.967 sum 1.744 -3.480 13.340 13.897 Atomic orbital electron populations 1.22410 1.01193 0.99216 1.00429 1.19367 0.89442 0.95101 0.85920 0.93578 1.21098 1.30370 1.12394 0.89752 0.92097 1.24915 0.95303 0.95160 0.98919 1.69873 1.37143 1.23119 1.23398 0.86597 0.79244 0.79558 0.82203 1.20467 1.21433 1.20267 1.62353 1.59277 1.01326 1.01545 1.22256 0.96317 0.91711 1.01201 1.21495 0.96304 0.94359 0.89761 0.93707 1.21787 1.02426 0.94767 1.00647 1.22947 0.82254 0.98819 0.95864 0.92667 1.22794 1.00017 0.99881 0.88083 1.60928 1.06725 1.22574 1.41029 1.22671 0.88517 1.02404 0.97386 1.23220 0.99430 0.95534 0.87817 1.88266 1.18587 1.77723 1.42071 0.95271 0.97421 0.89370 0.93032 0.96906 0.90700 0.94220 0.91871 0.93683 0.91375 0.89459 0.89991 0.84581 0.90005 0.90138 0.88729 0.93843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.27 37.16 0.31 -3.89 16 2 C 0.21 5.24 2.09 -68.87 -0.14 5.09 16 3 H 0.05 1.27 6.05 -51.93 -0.31 0.96 16 4 C -0.50 -13.76 7.88 -34.44 -0.27 -14.03 16 5 H 0.06 1.70 6.77 -52.49 -0.36 1.34 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.62 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 N -0.52 -11.39 4.56 -228.30 -1.04 -12.43 16 13 C 0.03 0.68 8.35 60.06 0.50 1.18 16 14 C 0.09 1.66 1.65 -67.71 -0.11 1.54 16 15 H 0.05 0.83 6.44 -51.93 -0.33 0.50 16 16 C -0.14 -2.49 8.53 37.16 0.32 -2.17 16 17 C 0.06 0.94 2.20 -26.68 -0.06 0.88 16 18 H 0.06 0.86 6.06 -51.93 -0.31 0.54 16 19 C 0.02 0.29 5.87 -3.71 -0.02 0.26 16 20 N -0.68 -7.75 6.93 -113.49 -0.79 -8.53 16 21 C 0.02 0.21 6.76 -3.71 -0.03 0.19 16 22 C 0.02 0.23 7.00 37.21 0.26 0.49 16 23 O -0.35 -5.74 9.53 -35.23 -0.34 -6.07 16 24 H 0.03 0.68 6.48 -51.93 -0.34 0.35 16 25 H 0.01 0.15 6.52 -51.93 -0.34 -0.19 16 26 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.01 0.25 6.51 -51.93 -0.34 -0.09 16 29 H 0.07 1.63 6.41 -51.93 -0.33 1.30 16 30 H 0.04 0.71 6.13 -51.92 -0.32 0.39 16 31 H 0.06 1.24 6.30 -51.93 -0.33 0.92 16 32 H 0.04 0.67 6.50 -51.93 -0.34 0.34 16 33 H 0.07 1.30 7.55 -51.93 -0.39 0.91 16 34 H 0.09 1.17 6.43 -51.93 -0.33 0.84 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.34 3.38 8.89 -39.29 -0.35 3.03 16 37 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.50 8.14 -51.92 -0.42 0.08 16 LS Contribution 295.24 15.07 4.45 4.45 Total: -1.00 -29.26 295.24 -7.73 -37.00 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.29 Total: 2.96 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 0.66 Total: -8.95 kcal Atomic # 7 Polarization: -44.76 SS G_CDS: -1.20 Total: -45.96 kcal Atomic # 8 Polarization: -5.74 SS G_CDS: -0.34 Total: -6.07 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.26 -7.73 -37.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699712438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.353 kcal (2) G-P(sol) polarization free energy of solvation -29.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds