Wall clock time and date at job start Mon Mar 30 2020 05:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46713 * 2 1 4 4 C 1.50697 * 109.47265 * 240.00242 * 2 1 3 5 5 H 1.07997 * 120.00159 * 239.99696 * 4 2 1 6 6 C 1.37881 * 120.00209 * 59.99877 * 4 2 1 7 7 N 1.31516 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00298 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47003 * 59.99585 * 8 6 4 10 10 H 1.48497 * 109.47121 * 180.02562 * 8 6 4 11 11 H 1.48508 * 109.46772 * 299.99938 * 8 6 4 12 12 N 1.46893 * 109.46966 * 120.00009 * 2 1 3 13 13 C 1.46898 * 111.00042 * 58.95726 * 12 2 1 14 14 C 1.46899 * 111.00255 * 295.00224 * 12 2 1 15 15 H 1.09000 * 109.47162 * 59.99933 * 14 12 2 16 16 C 1.53006 * 109.47163 * 299.99972 * 14 12 2 17 17 C 1.52999 * 109.47248 * 180.02562 * 14 12 2 18 18 H 1.09001 * 109.50253 * 305.08213 * 17 14 12 19 19 C 1.53099 * 109.50890 * 185.00039 * 17 14 12 20 20 N 1.47013 * 109.26040 * 183.21158 * 19 17 14 21 21 C 1.47018 * 110.75061 * 58.61610 * 20 19 17 22 22 C 1.53095 * 109.25655 * 301.38468 * 21 20 19 23 23 O 1.43009 * 109.50918 * 65.21447 * 17 14 12 24 24 H 1.09000 * 109.46994 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47434 * 299.99764 * 1 2 3 26 26 H 1.09001 * 109.47175 * 59.99686 * 1 2 3 27 27 H 0.96998 * 120.00369 * 180.02562 * 7 6 4 28 28 H 1.09001 * 109.47309 * 296.04539 * 13 12 2 29 29 H 1.08998 * 109.47470 * 56.04639 * 13 12 2 30 30 H 1.09007 * 109.47247 * 176.04588 * 13 12 2 31 31 H 1.09001 * 109.47002 * 59.99764 * 16 14 12 32 32 H 1.08993 * 109.46955 * 180.02562 * 16 14 12 33 33 H 1.09000 * 109.47050 * 300.00030 * 16 14 12 34 34 H 1.09001 * 109.50689 * 303.14936 * 19 17 14 35 35 H 1.09003 * 109.50392 * 63.23315 * 19 17 14 36 36 H 1.00894 * 110.99918 * 294.83986 * 20 19 17 37 37 H 1.08996 * 109.50488 * 61.32075 * 21 20 19 38 38 H 1.09000 * 109.50423 * 181.40580 * 21 20 19 39 39 H 1.09003 * 109.50653 * 176.78740 * 22 21 20 40 40 H 1.09007 * 109.50486 * 296.91449 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3214 -1.1202 -4.0080 9 1 1.8260 -2.5200 -4.0078 10 1 1.8270 -0.4197 -5.2204 11 1 3.8065 -1.1207 -4.0082 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6486 0.0391 2.4180 15 1 0.5631 0.1176 2.4784 16 6 2.2598 1.4412 2.3772 17 6 2.1752 -0.7107 3.6433 18 1 1.8122 -1.7384 3.6248 19 6 1.6837 -0.0179 4.9170 20 7 2.2551 -0.6963 6.0894 21 6 3.7243 -0.6749 6.0389 22 6 4.1953 -1.3612 4.7539 23 8 3.6052 -0.7081 3.6267 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.7081 1.1609 -3.4844 28 1 0.4419 -2.0731 1.3346 29 1 1.8167 -2.5950 0.3318 30 1 1.9617 -2.5869 2.1058 31 1 1.8851 1.9756 1.5043 32 1 1.9849 1.9838 3.2816 33 1 3.3453 1.3627 2.3168 34 1 2.0006 1.0250 4.9095 35 1 0.5957 -0.0673 4.9615 36 1 1.9096 -1.6412 6.1644 37 1 4.0738 0.3574 6.0493 38 1 4.1259 -1.2040 6.9031 39 1 5.2812 -1.2974 4.6843 40 1 3.8917 -2.4080 4.7681 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699712438.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:02 Heat of formation + Delta-G solvation = -50.962083 kcal Electronic energy + Delta-G solvation = -19008.793571 eV Core-core repulsion = 16244.050953 eV Total energy + Delta-G solvation = -2764.742618 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.95205 -38.89413 -35.40847 -35.11438 -33.29434 -30.60809 -30.40422 -27.31945 -27.08267 -25.90974 -25.10230 -23.12470 -21.81100 -20.11770 -18.32693 -17.37295 -17.22510 -17.04142 -16.60074 -16.03873 -15.96831 -15.41989 -14.98444 -14.64744 -14.57819 -13.82610 -13.58775 -13.36002 -13.08922 -12.93480 -12.90925 -12.70053 -12.60091 -12.41950 -12.25682 -12.03476 -12.00478 -11.95537 -11.84274 -11.44820 -10.86069 -10.80624 -10.43174 -9.18961 -8.74759 -8.08885 -6.18838 1.42068 1.43839 1.51298 2.43612 2.86084 3.19869 3.21520 3.34127 3.88905 3.93787 4.00654 4.18428 4.28545 4.37047 4.44312 4.52736 4.54047 4.68464 4.72899 4.82022 4.83459 4.85949 4.92370 5.00267 5.04914 5.10284 5.19660 5.23340 5.44348 5.58994 5.74472 5.81529 5.84963 6.24205 6.35819 6.36427 6.54044 6.82895 6.95111 7.49832 8.96947 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.042410 B = 0.005972 C = 0.005686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 660.069731 B = 4687.485457 C = 4923.154560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.213 3.787 3 H 0.016 0.984 4 C -0.515 4.515 5 H 0.052 0.948 6 C 0.012 3.988 7 N -0.920 5.920 8 Si 0.957 3.043 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.276 1.276 12 N -0.535 5.535 13 C 0.041 3.959 14 C 0.087 3.913 15 H 0.046 0.954 16 C -0.130 4.130 17 C 0.070 3.930 18 H 0.057 0.943 19 C 0.031 3.969 20 N -0.682 5.682 21 C 0.026 3.974 22 C 0.014 3.986 23 O -0.382 6.382 24 H 0.029 0.971 25 H 0.026 0.974 26 H 0.060 0.940 27 H 0.261 0.739 28 H 0.016 0.984 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.094 0.906 36 H 0.347 0.653 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.104 0.896 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.018 -3.912 16.169 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.106 3.894 3 H 0.034 0.966 4 C -0.554 4.554 5 H 0.070 0.930 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.201 1.201 12 N -0.259 5.259 13 C -0.108 4.108 14 C -0.022 4.022 15 H 0.064 0.936 16 C -0.187 4.187 17 C 0.010 3.990 18 H 0.074 0.926 19 C -0.099 4.099 20 N -0.311 5.311 21 C -0.104 4.104 22 C -0.064 4.064 23 O -0.301 6.301 24 H 0.048 0.952 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.035 0.965 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.094 0.906 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.112 0.888 36 H 0.165 0.835 37 H 0.093 0.907 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.521 -3.164 16.296 16.791 hybrid contribution -0.616 -1.002 -1.760 2.117 sum 1.906 -4.166 14.536 15.241 Atomic orbital electron populations 1.22193 1.00583 0.98991 0.99979 1.19093 0.89737 0.93577 0.86956 0.96623 1.21376 1.30450 1.12355 0.91178 0.92951 1.25657 0.95480 0.95842 1.01686 1.70000 1.37906 1.24171 1.23956 0.85633 0.78593 0.78713 0.78786 1.19700 1.20910 1.20102 1.62237 1.59738 1.02133 1.01792 1.22186 0.96612 0.90772 1.01181 1.21602 0.96551 0.94503 0.89545 0.93588 1.21692 1.01145 0.94940 1.00941 1.22814 0.82197 0.98576 0.95407 0.92560 1.22678 1.00702 0.99342 0.87219 1.60936 1.07182 1.23287 1.39677 1.22679 0.88011 1.02241 0.97470 1.23439 0.99867 0.95778 0.87303 1.88211 1.18997 1.78533 1.44339 0.95183 0.95461 0.92113 0.93034 0.96518 0.92841 0.91737 0.94439 0.90632 0.92987 0.90046 0.88811 0.83456 0.90668 0.87442 0.87772 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.74 8.27 71.98 0.60 -7.14 16 2 C 0.21 10.99 2.09 44.17 0.09 11.08 16 3 H 0.02 0.91 6.05 -2.39 -0.01 0.90 16 4 C -0.52 -28.99 7.88 25.60 0.20 -28.79 16 5 H 0.05 2.97 6.77 -2.91 -0.02 2.95 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.57 11.32 21.45 0.24 -53.32 16 8 Si 0.96 44.57 29.54 68.60 2.03 46.60 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 N -0.54 -23.41 4.56 -876.21 -4.00 -27.41 16 13 C 0.04 1.61 8.35 127.69 1.07 2.68 16 14 C 0.09 3.12 1.65 44.92 0.07 3.19 16 15 H 0.05 1.65 6.44 -2.39 -0.02 1.63 16 16 C -0.13 -4.65 8.53 71.98 0.61 -4.04 16 17 C 0.07 2.02 2.20 30.63 0.07 2.09 16 18 H 0.06 1.61 6.06 -2.39 -0.01 1.59 16 19 C 0.03 0.71 5.87 86.31 0.51 1.22 16 20 N -0.68 -13.28 6.93 -512.99 -3.55 -16.83 16 21 C 0.03 0.46 6.76 86.31 0.58 1.05 16 22 C 0.01 0.31 7.00 72.01 0.50 0.82 16 23 O -0.38 -12.02 9.53 -148.98 -1.42 -13.44 16 24 H 0.03 1.41 6.48 -2.39 -0.02 1.40 16 25 H 0.03 1.18 6.52 -2.39 -0.02 1.16 16 26 H 0.06 3.32 6.07 -2.39 -0.01 3.30 16 27 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.02 0.63 6.51 -2.39 -0.02 0.62 16 29 H 0.05 2.32 6.41 -2.39 -0.02 2.31 16 30 H 0.06 2.21 6.13 -2.38 -0.01 2.19 16 31 H 0.04 1.51 6.30 -2.39 -0.02 1.49 16 32 H 0.07 2.19 6.50 -2.39 -0.02 2.17 16 33 H 0.05 2.01 7.55 -2.39 -0.02 1.99 16 34 H 0.08 1.99 6.43 -2.39 -0.02 1.97 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.35 5.75 8.89 -89.70 -0.80 4.95 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 Total: -1.00 -63.01 295.24 -1.71 -64.72 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: 0.24 Total: 16.42 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 4.76 Total: -16.74 kcal Atomic # 7 Polarization: -90.26 SS G_CDS: -7.31 Total: -97.56 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -1.42 Total: -13.44 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.01 -1.71 -64.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699712438.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.763 kcal (2) G-P(sol) polarization free energy of solvation -63.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds