Wall clock time and date at job start Mon Mar 30 2020 05:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.50695 * 109.47199 * 240.00294 * 2 1 3 5 5 H 1.07997 * 120.00180 * 242.84938 * 4 2 1 6 6 C 1.37875 * 119.99888 * 62.85064 * 4 2 1 7 7 N 1.31519 * 119.99963 * 197.65534 * 6 4 2 8 8 Si 1.86796 * 120.00291 * 17.65395 * 6 4 2 9 9 H 1.48505 * 109.47096 * 94.28165 * 8 6 4 10 10 H 1.48499 * 109.47577 * 214.28322 * 8 6 4 11 11 H 1.48499 * 109.46989 * 334.28387 * 8 6 4 12 12 N 1.46905 * 109.47180 * 120.00026 * 2 1 3 13 13 C 1.46897 * 110.99610 * 182.36122 * 12 2 1 14 14 C 1.46893 * 111.00109 * 306.32232 * 12 2 1 15 15 H 1.08993 * 109.47479 * 57.25275 * 14 12 2 16 16 C 1.52996 * 109.47241 * 177.25320 * 14 12 2 17 17 C 1.53006 * 109.47090 * 297.24983 * 14 12 2 18 18 H 1.08997 * 109.53734 * 52.83701 * 17 14 12 19 19 C 1.53100 * 109.50525 * 172.94176 * 17 14 12 20 20 N 1.47018 * 109.25448 * 176.78132 * 19 17 14 21 21 C 1.47012 * 110.75624 * 301.39163 * 20 19 17 22 22 C 1.53097 * 109.26057 * 58.61173 * 21 20 19 23 23 O 1.43012 * 109.50610 * 292.73117 * 17 14 12 24 24 H 1.08999 * 109.47179 * 299.79113 * 1 2 3 25 25 H 1.08995 * 109.47194 * 59.79650 * 1 2 3 26 26 H 1.09000 * 109.46713 * 179.79601 * 1 2 3 27 27 H 0.97005 * 119.99619 * 180.02562 * 7 6 4 28 28 H 1.09009 * 109.46683 * 175.14606 * 13 12 2 29 29 H 1.08993 * 109.47488 * 295.14802 * 13 12 2 30 30 H 1.09000 * 109.47377 * 55.15353 * 13 12 2 31 31 H 1.08994 * 109.47705 * 186.81127 * 16 14 12 32 32 H 1.09003 * 109.46941 * 306.80896 * 16 14 12 33 33 H 1.09005 * 109.47047 * 66.80401 * 16 14 12 34 34 H 1.08999 * 109.50142 * 56.85311 * 19 17 14 35 35 H 1.08995 * 109.50645 * 296.72000 * 19 17 14 36 36 H 1.00905 * 110.99501 * 65.16190 * 20 19 17 37 37 H 1.08997 * 109.50668 * 178.55079 * 21 20 19 38 38 H 1.09004 * 109.50238 * 298.67830 * 21 20 19 39 39 H 1.09000 * 109.50428 * 63.09065 * 22 21 20 40 40 H 1.09004 * 109.50404 * 183.17460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6148 -1.6145 -1.1321 6 6 1.7485 -0.2059 -2.4818 7 7 1.8701 -0.9730 -3.5432 8 14 1.1912 1.5670 -2.6698 9 1 2.3661 2.4269 -2.9622 10 1 0.2168 1.6640 -3.7862 11 1 0.5476 2.0198 -1.4104 12 7 2.0198 -0.6925 1.1995 13 6 3.4871 -0.6633 1.2619 14 6 1.4294 -0.1192 2.4162 15 1 0.3426 -0.1728 2.3529 16 6 1.9087 -0.9083 3.6363 17 6 1.8609 1.3424 2.5526 18 1 1.6332 1.8772 1.6306 19 6 1.1095 1.9906 3.7185 20 7 1.5840 3.3710 3.8935 21 6 3.0313 3.3958 4.1504 22 6 3.7633 2.7334 2.9803 23 8 3.2672 1.4036 2.8054 24 1 -0.3633 0.5106 0.8918 25 1 -0.3633 0.5170 -0.8881 26 1 -0.3633 -1.0277 -0.0037 27 1 1.6707 -0.6180 -4.4236 28 1 3.8197 -1.1064 2.2007 29 1 3.8977 -1.2308 0.4268 30 1 3.8328 0.3688 1.2048 31 1 1.3791 -0.5623 4.5238 32 1 1.7087 -1.9690 3.4844 33 1 2.9798 -0.7560 3.7697 34 1 1.2946 1.4236 4.6308 35 1 0.0409 1.9974 3.5038 36 1 1.3492 3.9383 3.0927 37 1 3.3654 4.4284 4.2513 38 1 3.2470 2.8513 5.0698 39 1 3.5910 3.3088 2.0707 40 1 4.8320 2.6990 3.1922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699712439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:10 Heat of formation + Delta-G solvation = -23.578289 kcal Electronic energy + Delta-G solvation = -19460.659012 eV Core-core repulsion = 16697.103844 eV Total energy + Delta-G solvation = -2763.555168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -40.02264 -37.24829 -34.40256 -33.33303 -31.63461 -30.18933 -28.83507 -26.16908 -25.38472 -24.31650 -23.62019 -21.55746 -20.69301 -18.69207 -16.90464 -16.41354 -16.15067 -15.42038 -15.14057 -14.91303 -14.78972 -14.11452 -13.52031 -13.08308 -12.78113 -12.58605 -12.47332 -12.11445 -11.92982 -11.82562 -11.44460 -11.41231 -11.05460 -10.90088 -10.85064 -10.66713 -10.36292 -10.22947 -10.03352 -9.79704 -9.51292 -9.11293 -8.50342 -8.28549 -7.12775 -6.09367 -4.00266 3.24051 3.33593 3.35171 3.85772 4.12095 4.40837 4.70811 4.89400 5.04069 5.06832 5.16606 5.24438 5.27712 5.40357 5.46350 5.61857 5.76161 5.81148 5.86917 5.99121 6.06501 6.28461 6.40836 6.47891 6.53376 6.61006 6.63393 6.74771 6.80285 6.90846 7.06275 7.15359 7.29367 7.34067 7.72638 8.03079 8.16904 8.69992 9.04893 9.57701 11.03903 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027035 B = 0.008429 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.437944 B = 3321.170267 C = 3656.021147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.187 3.813 3 H -0.009 1.009 4 C -0.506 4.506 5 H 0.080 0.920 6 C 0.075 3.925 7 N -0.890 5.890 8 Si 0.860 3.140 9 H -0.283 1.283 10 H -0.287 1.287 11 H -0.259 1.259 12 N -0.517 5.517 13 C 0.039 3.961 14 C 0.086 3.914 15 H 0.092 0.908 16 C -0.140 4.140 17 C 0.019 3.981 18 H 0.061 0.939 19 C 0.027 3.973 20 N -0.686 5.686 21 C 0.023 3.977 22 C 0.016 3.984 23 O -0.357 6.357 24 H 0.021 0.979 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.035 0.965 31 H 0.048 0.952 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.339 0.661 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.045 0.955 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.336 7.591 14.524 16.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.079 3.921 3 H 0.009 0.991 4 C -0.544 4.544 5 H 0.098 0.902 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.688 3.312 9 H -0.210 1.210 10 H -0.213 1.213 11 H -0.183 1.183 12 N -0.240 5.240 13 C -0.109 4.109 14 C -0.024 4.024 15 H 0.110 0.890 16 C -0.198 4.198 17 C -0.042 4.042 18 H 0.079 0.921 19 C -0.103 4.103 20 N -0.314 5.314 21 C -0.107 4.107 22 C -0.063 4.063 23 O -0.276 6.276 24 H 0.040 0.960 25 H 0.066 0.934 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.156 0.844 37 H 0.098 0.902 38 H 0.099 0.901 39 H 0.064 0.936 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.106 6.934 14.964 16.493 hybrid contribution 0.183 1.989 -1.278 2.372 sum 0.289 8.923 13.686 16.341 Atomic orbital electron populations 1.22268 0.98446 1.01068 0.98358 1.19609 0.91450 0.92026 0.88976 0.99145 1.20893 1.34305 1.11313 0.87911 0.90211 1.24861 0.94946 0.96971 0.95923 1.69999 1.49087 1.34904 0.98809 0.87244 0.78649 0.87236 0.78104 1.20971 1.21272 1.18328 1.62196 1.07327 1.53760 1.00675 1.22318 0.87834 1.00374 1.00381 1.21890 0.99725 0.88283 0.92485 0.89010 1.21817 1.01831 1.00357 0.95770 1.23733 0.82221 1.01015 0.97227 0.92116 1.22728 0.99642 0.88871 0.99042 1.60920 1.13899 1.11340 1.45255 1.22631 0.87919 1.01335 0.98822 1.23223 0.99577 0.85918 0.97580 1.88259 1.22287 1.25029 1.92009 0.95961 0.93447 0.92356 0.92765 0.93285 0.91684 0.94697 0.93336 0.92025 0.91798 0.89741 0.89974 0.84401 0.90156 0.90115 0.93625 0.88720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.11 37.16 0.30 -2.84 16 2 C 0.19 4.41 1.11 -68.86 -0.08 4.33 16 3 H -0.01 -0.21 5.20 -51.93 -0.27 -0.48 16 4 C -0.51 -14.23 8.38 -34.44 -0.29 -14.52 16 5 H 0.08 2.47 7.20 -52.49 -0.38 2.09 16 6 C 0.08 2.16 5.32 -17.82 -0.09 2.06 16 7 N -0.89 -27.15 13.96 55.43 0.77 -26.37 16 8 Si 0.86 21.24 25.82 -169.99 -4.39 16.85 16 9 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 10 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 11 H -0.26 -6.00 5.48 56.52 0.31 -5.70 16 12 N -0.52 -10.80 4.63 -228.30 -1.06 -11.86 16 13 C 0.04 0.79 7.86 60.06 0.47 1.26 16 14 C 0.09 1.46 1.95 -67.72 -0.13 1.32 16 15 H 0.09 1.52 6.04 -51.93 -0.31 1.21 16 16 C -0.14 -2.04 8.26 37.16 0.31 -1.73 16 17 C 0.02 0.30 2.19 -26.68 -0.06 0.24 16 18 H 0.06 1.11 6.27 -51.93 -0.33 0.78 16 19 C 0.03 0.35 5.90 -3.71 -0.02 0.33 16 20 N -0.69 -8.22 6.93 -113.49 -0.79 -9.01 16 21 C 0.02 0.25 6.76 -3.71 -0.03 0.22 16 22 C 0.02 0.20 7.00 37.21 0.26 0.46 16 23 O -0.36 -5.61 6.16 -35.23 -0.22 -5.83 16 24 H 0.02 0.41 6.25 -51.93 -0.32 0.08 16 25 H 0.05 1.07 4.88 -51.93 -0.25 0.82 16 26 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 28 H 0.05 0.89 5.99 -51.92 -0.31 0.58 16 29 H 0.06 1.45 6.83 -51.93 -0.35 1.10 16 30 H 0.03 0.72 5.89 -51.93 -0.31 0.42 16 31 H 0.05 0.60 6.90 -51.93 -0.36 0.24 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.06 0.97 5.73 -51.93 -0.30 0.67 16 34 H 0.08 1.07 6.66 -51.93 -0.35 0.72 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.34 3.90 8.89 -39.29 -0.35 3.55 16 37 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 288.04 15.07 4.34 4.34 Total: -1.00 -30.19 288.04 -7.06 -37.25 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -6.37 Total: 3.49 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.64 Total: -8.87 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: -1.07 Total: -47.24 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.22 Total: -5.83 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.39 Total: 16.85 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.19 -7.06 -37.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699712439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.674 kcal (2) G-P(sol) polarization free energy of solvation -30.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds