Wall clock time and date at job start Mon Mar 30 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46969 * 2 1 4 4 C 1.50695 * 109.47199 * 240.00294 * 2 1 3 5 5 H 1.07997 * 120.00180 * 242.84938 * 4 2 1 6 6 C 1.37875 * 119.99888 * 62.85064 * 4 2 1 7 7 N 1.31519 * 119.99963 * 197.65534 * 6 4 2 8 8 Si 1.86796 * 120.00291 * 17.65395 * 6 4 2 9 9 H 1.48505 * 109.47096 * 94.28165 * 8 6 4 10 10 H 1.48499 * 109.47577 * 214.28322 * 8 6 4 11 11 H 1.48499 * 109.46989 * 334.28387 * 8 6 4 12 12 N 1.46905 * 109.47180 * 120.00026 * 2 1 3 13 13 C 1.46897 * 110.99610 * 182.36122 * 12 2 1 14 14 C 1.46893 * 111.00109 * 306.32232 * 12 2 1 15 15 H 1.08993 * 109.47479 * 57.25275 * 14 12 2 16 16 C 1.52996 * 109.47241 * 177.25320 * 14 12 2 17 17 C 1.53006 * 109.47090 * 297.24983 * 14 12 2 18 18 H 1.08997 * 109.53734 * 52.83701 * 17 14 12 19 19 C 1.53100 * 109.50525 * 172.94176 * 17 14 12 20 20 N 1.47018 * 109.25448 * 176.78132 * 19 17 14 21 21 C 1.47012 * 110.75624 * 301.39163 * 20 19 17 22 22 C 1.53097 * 109.26057 * 58.61173 * 21 20 19 23 23 O 1.43012 * 109.50610 * 292.73117 * 17 14 12 24 24 H 1.08999 * 109.47179 * 299.79113 * 1 2 3 25 25 H 1.08995 * 109.47194 * 59.79650 * 1 2 3 26 26 H 1.09000 * 109.46713 * 179.79601 * 1 2 3 27 27 H 0.97005 * 119.99619 * 180.02562 * 7 6 4 28 28 H 1.09009 * 109.46683 * 175.14606 * 13 12 2 29 29 H 1.08993 * 109.47488 * 295.14802 * 13 12 2 30 30 H 1.09000 * 109.47377 * 55.15353 * 13 12 2 31 31 H 1.08994 * 109.47705 * 186.81127 * 16 14 12 32 32 H 1.09003 * 109.46941 * 306.80896 * 16 14 12 33 33 H 1.09005 * 109.47047 * 66.80401 * 16 14 12 34 34 H 1.08999 * 109.50142 * 56.85311 * 19 17 14 35 35 H 1.08995 * 109.50645 * 296.72000 * 19 17 14 36 36 H 1.00905 * 110.99501 * 65.16190 * 20 19 17 37 37 H 1.08997 * 109.50668 * 178.55079 * 21 20 19 38 38 H 1.09004 * 109.50238 * 298.67830 * 21 20 19 39 39 H 1.09000 * 109.50428 * 63.09065 * 22 21 20 40 40 H 1.09004 * 109.50404 * 183.17460 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6148 -1.6145 -1.1321 6 6 1.7485 -0.2059 -2.4818 7 7 1.8701 -0.9730 -3.5432 8 14 1.1912 1.5670 -2.6698 9 1 2.3661 2.4269 -2.9622 10 1 0.2168 1.6640 -3.7862 11 1 0.5476 2.0198 -1.4104 12 7 2.0198 -0.6925 1.1995 13 6 3.4871 -0.6633 1.2619 14 6 1.4294 -0.1192 2.4162 15 1 0.3426 -0.1728 2.3529 16 6 1.9087 -0.9083 3.6363 17 6 1.8609 1.3424 2.5526 18 1 1.6332 1.8772 1.6306 19 6 1.1095 1.9906 3.7185 20 7 1.5840 3.3710 3.8935 21 6 3.0313 3.3958 4.1504 22 6 3.7633 2.7334 2.9803 23 8 3.2672 1.4036 2.8054 24 1 -0.3633 0.5106 0.8918 25 1 -0.3633 0.5170 -0.8881 26 1 -0.3633 -1.0277 -0.0037 27 1 1.6707 -0.6180 -4.4236 28 1 3.8197 -1.1064 2.2007 29 1 3.8977 -1.2308 0.4268 30 1 3.8328 0.3688 1.2048 31 1 1.3791 -0.5623 4.5238 32 1 1.7087 -1.9690 3.4844 33 1 2.9798 -0.7560 3.7697 34 1 1.2946 1.4236 4.6308 35 1 0.0409 1.9974 3.5038 36 1 1.3492 3.9383 3.0927 37 1 3.3654 4.4284 4.2513 38 1 3.2470 2.8513 5.0698 39 1 3.5910 3.3088 2.0707 40 1 4.8320 2.6990 3.1922 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699712439.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:07 Heat of formation + Delta-G solvation = -47.858984 kcal Electronic energy + Delta-G solvation = -19461.711902 eV Core-core repulsion = 16697.103844 eV Total energy + Delta-G solvation = -2764.608058 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 2.68 seconds Orbital eigenvalues (eV) -41.22184 -38.69789 -35.48114 -35.13001 -33.32029 -31.76379 -30.10522 -27.65489 -26.93573 -25.89092 -24.79403 -22.90273 -22.08451 -20.18785 -18.93654 -17.54107 -17.32460 -16.81158 -16.66140 -16.13302 -16.08837 -15.60825 -15.08550 -14.72993 -14.44404 -13.99825 -13.77114 -13.63105 -13.35556 -13.01095 -12.96235 -12.77098 -12.47162 -12.37454 -12.30119 -12.10116 -11.91627 -11.86662 -11.56614 -11.40777 -11.07873 -10.99130 -10.62087 -9.45075 -8.68566 -8.31535 -6.27057 1.27523 1.31566 1.40689 2.31630 2.75011 3.01046 3.21220 3.34034 3.78804 3.94511 3.99978 4.11351 4.24837 4.34455 4.43420 4.45436 4.56089 4.58807 4.71718 4.75094 4.76292 4.86049 4.92246 4.99659 5.03647 5.06270 5.07536 5.27299 5.35294 5.42560 5.52777 5.75191 5.83426 6.08069 6.20390 6.26294 6.45368 6.76823 6.79499 7.35116 8.85813 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.027035 B = 0.008429 C = 0.007657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.437944 B = 3321.170267 C = 3656.021147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.194 3.806 3 H -0.014 1.014 4 C -0.512 4.512 5 H 0.033 0.967 6 C 0.019 3.981 7 N -0.940 5.940 8 Si 0.926 3.074 9 H -0.282 1.282 10 H -0.282 1.282 11 H -0.232 1.232 12 N -0.533 5.533 13 C 0.052 3.948 14 C 0.082 3.918 15 H 0.099 0.901 16 C -0.131 4.131 17 C 0.026 3.974 18 H 0.035 0.965 19 C 0.036 3.964 20 N -0.686 5.686 21 C 0.030 3.970 22 C 0.011 3.989 23 O -0.377 6.377 24 H 0.059 0.941 25 H 0.039 0.961 26 H 0.048 0.952 27 H 0.265 0.735 28 H 0.070 0.930 29 H 0.029 0.971 30 H 0.031 0.969 31 H 0.077 0.923 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.342 0.658 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.036 0.964 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.685 9.759 16.969 19.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.086 3.914 3 H 0.003 0.997 4 C -0.550 4.550 5 H 0.051 0.949 6 C -0.179 4.179 7 N -0.580 5.580 8 Si 0.750 3.250 9 H -0.209 1.209 10 H -0.208 1.208 11 H -0.155 1.155 12 N -0.256 5.256 13 C -0.096 4.096 14 C -0.027 4.027 15 H 0.117 0.883 16 C -0.189 4.189 17 C -0.035 4.035 18 H 0.053 0.947 19 C -0.094 4.094 20 N -0.314 5.314 21 C -0.100 4.100 22 C -0.067 4.067 23 O -0.296 6.296 24 H 0.078 0.922 25 H 0.058 0.942 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.089 0.911 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.159 0.841 37 H 0.120 0.880 38 H 0.102 0.898 39 H 0.054 0.946 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.917 9.113 17.447 19.705 hybrid contribution 0.592 1.232 -1.992 2.416 sum -0.325 10.345 15.454 18.600 Atomic orbital electron populations 1.22151 0.96719 1.00974 0.99807 1.19393 0.92581 0.91056 0.88324 0.99696 1.21150 1.33489 1.10035 0.90326 0.94887 1.25701 0.95392 1.01414 0.95412 1.70138 1.51197 1.37177 0.99508 0.86183 0.78391 0.81187 0.79218 1.20882 1.20783 1.15495 1.62094 1.07492 1.54493 1.01562 1.22152 0.87850 0.99642 0.99960 1.22020 0.99863 0.89606 0.91241 0.88339 1.21745 1.01691 0.99725 0.95695 1.23546 0.82871 0.99674 0.97442 0.94743 1.22657 0.99752 0.89179 0.97823 1.60956 1.14518 1.10679 1.45262 1.22643 0.87034 1.02470 0.97861 1.23417 1.00683 0.84608 0.98036 1.88200 1.22350 1.26958 1.92101 0.92226 0.94162 0.93286 0.92613 0.91119 0.95174 0.95094 0.90388 0.92579 0.92445 0.88997 0.88945 0.84052 0.87979 0.89772 0.94601 0.87267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.84 8.11 71.98 0.58 -5.25 16 2 C 0.19 9.14 1.11 44.17 0.05 9.19 16 3 H -0.01 -0.69 5.20 -2.39 -0.01 -0.70 16 4 C -0.51 -29.76 8.38 25.60 0.21 -29.55 16 5 H 0.03 2.17 7.20 -2.91 -0.02 2.15 16 6 C 0.02 1.09 5.32 84.65 0.45 1.54 16 7 N -0.94 -59.31 13.96 21.45 0.30 -59.02 16 8 Si 0.93 43.95 25.82 68.60 1.77 45.72 16 9 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.23 -9.92 5.48 99.48 0.54 -9.38 16 12 N -0.53 -22.13 4.63 -876.20 -4.05 -26.19 16 13 C 0.05 2.13 7.86 127.69 1.00 3.14 16 14 C 0.08 2.58 1.95 44.92 0.09 2.67 16 15 H 0.10 2.96 6.04 -2.39 -0.01 2.94 16 16 C -0.13 -3.47 8.26 71.98 0.59 -2.87 16 17 C 0.03 0.74 2.19 30.63 0.07 0.81 16 18 H 0.03 1.18 6.27 -2.39 -0.01 1.17 16 19 C 0.04 0.80 5.90 86.31 0.51 1.31 16 20 N -0.69 -14.02 6.93 -512.99 -3.55 -17.58 16 21 C 0.03 0.54 6.76 86.31 0.58 1.13 16 22 C 0.01 0.25 7.00 72.01 0.50 0.75 16 23 O -0.38 -11.09 6.16 -148.98 -0.92 -12.01 16 24 H 0.06 2.04 6.25 -2.39 -0.01 2.02 16 25 H 0.04 1.73 4.88 -2.39 -0.01 1.71 16 26 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 27 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 28 H 0.07 2.54 5.99 -2.38 -0.01 2.53 16 29 H 0.03 1.40 6.83 -2.39 -0.02 1.39 16 30 H 0.03 1.29 5.89 -2.39 -0.01 1.27 16 31 H 0.08 1.61 6.90 -2.39 -0.02 1.60 16 32 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 1.60 5.73 -2.38 -0.01 1.58 16 34 H 0.09 1.93 6.66 -2.39 -0.02 1.91 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.34 6.76 8.89 -89.69 -0.80 5.96 16 37 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.11 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -67.06 288.04 -1.73 -68.79 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.07 Total: 17.41 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.65 Total: -17.13 kcal Atomic # 7 Polarization: -95.47 SS G_CDS: -7.31 Total: -102.78 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.92 Total: -12.01 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 1.77 Total: 45.72 kcal Total: -67.06 -1.73 -68.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699712439.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.930 kcal (2) G-P(sol) polarization free energy of solvation -67.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds