Wall clock time and date at job start Mon Mar 30 2020 05:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46986 * 2 1 4 4 C 1.50703 * 109.47437 * 240.00057 * 2 1 3 5 5 H 1.07998 * 119.99543 * 239.99874 * 4 2 1 6 6 C 1.37879 * 119.99883 * 59.99407 * 4 2 1 7 7 N 1.31513 * 120.00174 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99909 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46835 * 60.00031 * 8 6 4 10 10 H 1.48494 * 109.47086 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47154 * 300.00410 * 8 6 4 12 12 N 1.46899 * 109.47291 * 119.99579 * 2 1 3 13 13 C 1.46898 * 111.00000 * 165.34218 * 12 2 1 14 14 C 1.46892 * 111.00261 * 289.30047 * 12 2 1 15 15 H 1.08998 * 109.47260 * 33.95678 * 14 12 2 16 16 C 1.53000 * 109.47615 * 153.96178 * 14 12 2 17 17 C 1.53002 * 109.47065 * 273.96167 * 14 12 2 18 18 H 1.09008 * 109.51090 * 174.80068 * 17 14 12 19 19 C 1.53095 * 109.50966 * 54.66864 * 17 14 12 20 20 N 1.47017 * 109.26150 * 183.21982 * 19 17 14 21 21 C 1.47015 * 110.75148 * 58.61100 * 20 19 17 22 22 C 1.53098 * 109.26024 * 301.38737 * 21 20 19 23 23 O 1.43013 * 109.25919 * 56.85096 * 22 21 20 24 24 H 1.08990 * 109.47338 * 305.78064 * 1 2 3 25 25 H 1.08997 * 109.47224 * 65.78798 * 1 2 3 26 26 H 1.09002 * 109.46716 * 185.77905 * 1 2 3 27 27 H 0.96997 * 120.00076 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47318 * 175.90586 * 13 12 2 29 29 H 1.08995 * 109.47506 * 295.90598 * 13 12 2 30 30 H 1.09003 * 109.47246 * 55.90417 * 13 12 2 31 31 H 1.08994 * 109.47730 * 184.62700 * 16 14 12 32 32 H 1.09004 * 109.46582 * 304.62671 * 16 14 12 33 33 H 1.08997 * 109.46897 * 64.62087 * 16 14 12 34 34 H 1.09002 * 109.50316 * 303.15642 * 19 17 14 35 35 H 1.08998 * 109.50662 * 63.23598 * 19 17 14 36 36 H 1.00893 * 110.99824 * 182.39417 * 20 19 17 37 37 H 1.09006 * 109.50132 * 61.32408 * 21 20 19 38 38 H 1.08998 * 109.50410 * 181.40172 * 21 20 19 39 39 H 1.08992 * 109.50615 * 296.91287 * 22 21 20 40 40 H 1.09004 * 109.50293 * 176.78208 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3214 -1.1203 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 7 2.0197 -0.6924 1.1995 13 6 3.4461 -1.0200 1.0728 14 6 1.7679 0.1048 2.4073 15 1 0.8344 0.6554 2.2911 16 6 1.6651 -0.8236 3.6190 17 6 2.9188 1.0910 2.6165 18 1 2.6895 1.7449 3.4580 19 6 3.1080 1.9319 1.3513 20 7 4.2634 2.8234 1.5297 21 6 5.4815 2.0482 1.8067 22 6 5.2685 1.2062 3.0675 23 8 4.1232 0.3688 2.8875 24 1 -0.3633 0.6008 0.8336 25 1 -0.3633 0.4214 -0.9372 26 1 -0.3633 -1.0225 0.1035 27 1 0.7094 1.1617 -3.4844 28 1 3.8004 -1.4662 2.0020 29 1 3.5854 -1.7262 0.2544 30 1 4.0110 -0.1105 0.8679 31 1 1.3971 -0.2418 4.5009 32 1 0.8999 -1.5777 3.4350 33 1 2.6250 -1.3127 3.7843 34 1 3.2838 1.2741 0.5001 35 1 2.2125 2.5270 1.1725 36 1 4.3887 3.4184 0.7247 37 1 5.6953 1.3923 0.9627 38 1 6.3190 2.7288 1.9599 39 1 5.1079 1.8639 3.9216 40 1 6.1479 0.5869 3.2444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699712440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:18 Heat of formation + Delta-G solvation = -7.971296 kcal Electronic energy + Delta-G solvation = -19722.557197 eV Core-core repulsion = 16959.678799 eV Total energy + Delta-G solvation = -2762.878398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.01118 -36.71918 -34.37884 -33.19588 -31.02402 -29.68843 -28.79134 -26.28710 -25.33526 -23.90739 -23.59223 -21.16237 -19.99460 -19.04827 -16.64564 -16.17044 -15.99241 -14.97621 -14.73889 -14.58280 -14.19787 -13.96276 -13.74819 -13.23470 -12.70098 -12.39547 -11.87981 -11.74032 -11.59584 -11.44482 -11.20193 -11.01849 -10.88913 -10.71537 -10.65346 -10.32248 -10.25175 -10.00707 -9.76274 -9.61823 -9.18877 -8.76582 -8.38947 -8.16817 -6.84314 -6.01140 -4.04953 3.30431 3.35092 3.38440 4.07978 4.37714 4.40919 5.06323 5.17800 5.28096 5.32515 5.34278 5.42467 5.59306 5.67380 5.81792 5.90192 6.02078 6.07452 6.17471 6.28311 6.39800 6.57940 6.61708 6.76272 6.81245 6.91335 7.05904 7.13250 7.17252 7.29724 7.48793 7.51392 7.59513 7.82557 7.85854 8.27548 8.41437 8.69464 9.03149 9.59947 11.04931 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.008905 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.400401 B = 3143.631723 C = 3561.646108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.189 3.811 3 H 0.022 0.978 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.279 1.279 12 N -0.530 5.530 13 C 0.044 3.956 14 C 0.084 3.916 15 H 0.085 0.915 16 C -0.131 4.131 17 C 0.073 3.927 18 H 0.053 0.947 19 C 0.004 3.996 20 N -0.693 5.693 21 C 0.020 3.980 22 C 0.059 3.941 23 O -0.364 6.364 24 H 0.004 0.996 25 H 0.085 0.915 26 H 0.031 0.969 27 H 0.260 0.740 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.028 0.972 31 H 0.042 0.958 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.343 0.657 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.049 0.951 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.731 2.255 9.347 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.083 3.917 3 H 0.040 0.960 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.532 5.532 8 Si 0.721 3.279 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.205 1.205 12 N -0.254 5.254 13 C -0.104 4.104 14 C -0.026 4.026 15 H 0.103 0.897 16 C -0.189 4.189 17 C 0.014 3.986 18 H 0.071 0.929 19 C -0.124 4.124 20 N -0.324 5.324 21 C -0.110 4.110 22 C -0.018 4.018 23 O -0.283 6.283 24 H 0.023 0.977 25 H 0.103 0.897 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.160 0.840 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.067 0.933 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.252 1.843 9.907 11.363 hybrid contribution 0.936 0.396 -1.923 2.175 sum 6.187 2.239 7.984 10.346 Atomic orbital electron populations 1.21820 0.98111 0.98701 1.00397 1.19720 0.92326 0.93595 0.86012 0.96040 1.21286 1.30804 1.12372 0.89961 0.91841 1.24919 0.95257 0.95129 0.98899 1.69874 1.36934 1.23045 1.23388 0.86646 0.78994 0.79919 0.82351 1.20233 1.21409 1.20510 1.62251 1.16929 1.43831 1.02375 1.22479 0.88211 0.99838 0.99825 1.21868 0.95131 0.92603 0.93019 0.89721 1.21662 1.02177 0.99397 0.95647 1.22859 0.86425 0.93661 0.95687 0.92908 1.23373 0.93688 0.95931 0.99383 1.60619 1.03874 1.22780 1.45113 1.22553 0.93160 0.96731 0.98562 1.22545 0.89856 0.93502 0.95886 1.88271 1.16296 1.32124 1.91605 0.97671 0.89651 0.94969 0.93028 0.92885 0.92413 0.95329 0.93845 0.92294 0.92268 0.89416 0.90149 0.83986 0.94148 0.90610 0.93279 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 9.00 37.16 0.33 -2.88 16 2 C 0.19 4.61 1.50 -68.86 -0.10 4.51 16 3 H 0.02 0.56 4.08 -51.93 -0.21 0.35 16 4 C -0.51 -13.59 7.95 -34.44 -0.27 -13.87 16 5 H 0.06 1.73 5.72 -52.49 -0.30 1.42 16 6 C 0.06 1.60 5.29 -17.82 -0.09 1.51 16 7 N -0.89 -24.92 11.29 55.43 0.63 -24.29 16 8 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.53 -11.37 4.46 -228.30 -1.02 -12.38 16 13 C 0.04 0.91 7.19 60.06 0.43 1.34 16 14 C 0.08 1.54 2.46 -67.72 -0.17 1.38 16 15 H 0.08 1.60 6.19 -51.93 -0.32 1.27 16 16 C -0.13 -2.10 9.21 37.16 0.34 -1.76 16 17 C 0.07 1.27 2.50 -26.68 -0.07 1.20 16 18 H 0.05 0.88 8.14 -51.92 -0.42 0.46 16 19 C 0.00 0.08 4.09 -3.71 -0.02 0.07 16 20 N -0.69 -10.87 6.92 -113.49 -0.79 -11.65 16 21 C 0.02 0.28 6.49 -3.71 -0.02 0.25 16 22 C 0.06 0.82 7.01 37.21 0.26 1.08 16 23 O -0.36 -6.07 5.60 -35.23 -0.20 -6.27 16 24 H 0.00 0.10 6.66 -51.93 -0.35 -0.25 16 25 H 0.08 2.27 5.94 -51.93 -0.31 1.96 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.05 1.03 5.87 -51.93 -0.30 0.73 16 29 H 0.06 1.29 5.95 -51.93 -0.31 0.98 16 30 H 0.03 0.60 3.58 -51.93 -0.19 0.41 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.97 6.58 -51.93 -0.34 0.63 16 34 H 0.09 1.90 3.57 -51.93 -0.19 1.72 16 35 H 0.08 1.54 7.75 -51.93 -0.40 1.14 16 36 H 0.34 5.05 8.90 -39.30 -0.35 4.70 16 37 H 0.04 0.63 7.70 -51.93 -0.40 0.23 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 285.61 15.07 4.30 4.30 Total: -1.00 -27.75 285.61 -7.53 -35.27 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: -6.06 Total: 5.97 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 0.62 Total: -7.17 kcal Atomic # 7 Polarization: -47.15 SS G_CDS: -1.18 Total: -48.33 kcal Atomic # 8 Polarization: -6.07 SS G_CDS: -0.20 Total: -6.27 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -27.75 -7.53 -35.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699712440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.302 kcal (2) G-P(sol) polarization free energy of solvation -27.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds