Wall clock time and date at job start Mon Mar 30 2020 05:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46986 * 2 1 4 4 C 1.50703 * 109.47437 * 240.00057 * 2 1 3 5 5 H 1.07998 * 119.99543 * 239.99874 * 4 2 1 6 6 C 1.37879 * 119.99883 * 59.99407 * 4 2 1 7 7 N 1.31513 * 120.00174 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99909 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46835 * 60.00031 * 8 6 4 10 10 H 1.48494 * 109.47086 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47154 * 300.00410 * 8 6 4 12 12 N 1.46899 * 109.47291 * 119.99579 * 2 1 3 13 13 C 1.46898 * 111.00000 * 165.34218 * 12 2 1 14 14 C 1.46892 * 111.00261 * 289.30047 * 12 2 1 15 15 H 1.08998 * 109.47260 * 33.95678 * 14 12 2 16 16 C 1.53000 * 109.47615 * 153.96178 * 14 12 2 17 17 C 1.53002 * 109.47065 * 273.96167 * 14 12 2 18 18 H 1.09008 * 109.51090 * 174.80068 * 17 14 12 19 19 C 1.53095 * 109.50966 * 54.66864 * 17 14 12 20 20 N 1.47017 * 109.26150 * 183.21982 * 19 17 14 21 21 C 1.47015 * 110.75148 * 58.61100 * 20 19 17 22 22 C 1.53098 * 109.26024 * 301.38737 * 21 20 19 23 23 O 1.43013 * 109.25919 * 56.85096 * 22 21 20 24 24 H 1.08990 * 109.47338 * 305.78064 * 1 2 3 25 25 H 1.08997 * 109.47224 * 65.78798 * 1 2 3 26 26 H 1.09002 * 109.46716 * 185.77905 * 1 2 3 27 27 H 0.96997 * 120.00076 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.47318 * 175.90586 * 13 12 2 29 29 H 1.08995 * 109.47506 * 295.90598 * 13 12 2 30 30 H 1.09003 * 109.47246 * 55.90417 * 13 12 2 31 31 H 1.08994 * 109.47730 * 184.62700 * 16 14 12 32 32 H 1.09004 * 109.46582 * 304.62671 * 16 14 12 33 33 H 1.08997 * 109.46897 * 64.62087 * 16 14 12 34 34 H 1.09002 * 109.50316 * 303.15642 * 19 17 14 35 35 H 1.08998 * 109.50662 * 63.23598 * 19 17 14 36 36 H 1.00893 * 110.99824 * 182.39417 * 20 19 17 37 37 H 1.09006 * 109.50132 * 61.32408 * 21 20 19 38 38 H 1.08998 * 109.50410 * 181.40172 * 21 20 19 39 39 H 1.08992 * 109.50615 * 296.91287 * 22 21 20 40 40 H 1.09004 * 109.50293 * 176.78208 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6035 8 14 2.3214 -1.1203 -4.0079 9 1 1.8260 -2.5203 -4.0076 10 1 1.8270 -0.4200 -5.2204 11 1 3.8064 -1.1209 -4.0081 12 7 2.0197 -0.6924 1.1995 13 6 3.4461 -1.0200 1.0728 14 6 1.7679 0.1048 2.4073 15 1 0.8344 0.6554 2.2911 16 6 1.6651 -0.8236 3.6190 17 6 2.9188 1.0910 2.6165 18 1 2.6895 1.7449 3.4580 19 6 3.1080 1.9319 1.3513 20 7 4.2634 2.8234 1.5297 21 6 5.4815 2.0482 1.8067 22 6 5.2685 1.2062 3.0675 23 8 4.1232 0.3688 2.8875 24 1 -0.3633 0.6008 0.8336 25 1 -0.3633 0.4214 -0.9372 26 1 -0.3633 -1.0225 0.1035 27 1 0.7094 1.1617 -3.4844 28 1 3.8004 -1.4662 2.0020 29 1 3.5854 -1.7262 0.2544 30 1 4.0110 -0.1105 0.8679 31 1 1.3971 -0.2418 4.5009 32 1 0.8999 -1.5777 3.4350 33 1 2.6250 -1.3127 3.7843 34 1 3.2838 1.2741 0.5001 35 1 2.2125 2.5270 1.1725 36 1 4.3887 3.4184 0.7247 37 1 5.6953 1.3923 0.9627 38 1 6.3190 2.7288 1.9599 39 1 5.1079 1.8639 3.9216 40 1 6.1479 0.5869 3.2444 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699712440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:27:17 Heat of formation + Delta-G solvation = -28.391879 kcal Electronic energy + Delta-G solvation = -19723.442700 eV Core-core repulsion = 16959.678799 eV Total energy + Delta-G solvation = -2763.763901 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42274 -38.25339 -35.72322 -35.01550 -32.69627 -31.05891 -30.56086 -27.62491 -27.24761 -25.63431 -24.91178 -22.75151 -21.42487 -20.66933 -18.26936 -17.73472 -17.53410 -16.76172 -16.16561 -15.91722 -15.64774 -15.48457 -15.26278 -14.72277 -14.42581 -13.89312 -13.46553 -13.40464 -13.13326 -12.93586 -12.76833 -12.65064 -12.54503 -12.39517 -12.23031 -12.00926 -11.91162 -11.82473 -11.43194 -11.17617 -10.73386 -10.56615 -10.39506 -9.52188 -8.53661 -8.08522 -6.17920 1.39537 1.41153 1.48119 2.42087 2.83148 3.10051 3.20285 3.52854 3.90157 3.98861 4.11240 4.22617 4.29883 4.40774 4.47942 4.63745 4.68954 4.77555 4.84844 4.91397 4.93970 4.96181 5.09220 5.13408 5.17585 5.26040 5.32455 5.41763 5.52776 5.65322 5.78688 5.84086 5.92140 6.24812 6.26531 6.32066 6.52776 6.89608 7.00160 7.50372 8.96095 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024963 B = 0.008905 C = 0.007860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.400401 B = 3143.631723 C = 3561.646108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.194 3.806 3 H 0.011 0.989 4 C -0.519 4.519 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.949 3.051 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.537 5.537 13 C 0.058 3.942 14 C 0.079 3.921 15 H 0.078 0.922 16 C -0.121 4.121 17 C 0.083 3.917 18 H 0.067 0.933 19 C 0.014 3.986 20 N -0.688 5.688 21 C 0.019 3.981 22 C 0.055 3.945 23 O -0.377 6.377 24 H 0.024 0.976 25 H 0.060 0.940 26 H 0.024 0.976 27 H 0.259 0.741 28 H 0.068 0.932 29 H 0.034 0.966 30 H 0.025 0.975 31 H 0.069 0.931 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.346 0.654 37 H 0.022 0.978 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 2.319 10.690 12.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.087 3.913 3 H 0.028 0.972 4 C -0.558 4.558 5 H 0.073 0.927 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.775 3.225 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.201 1.201 12 N -0.261 5.261 13 C -0.090 4.090 14 C -0.031 4.031 15 H 0.096 0.904 16 C -0.179 4.179 17 C 0.023 3.977 18 H 0.085 0.915 19 C -0.115 4.115 20 N -0.320 5.320 21 C -0.110 4.110 22 C -0.021 4.021 23 O -0.296 6.296 24 H 0.043 0.957 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.164 0.836 37 H 0.040 0.960 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 6.329 1.905 11.266 13.062 hybrid contribution 0.651 0.414 -2.289 2.415 sum 6.980 2.319 8.977 11.606 Atomic orbital electron populations 1.21665 0.98273 0.98282 0.99859 1.19544 0.92098 0.93004 0.86642 0.97155 1.21560 1.30670 1.12206 0.91351 0.92709 1.25584 0.95547 0.95824 1.01413 1.69988 1.37747 1.24046 1.23787 0.85755 0.78572 0.78819 0.79316 1.20089 1.21000 1.20069 1.62195 1.17227 1.44276 1.02413 1.22334 0.87972 0.99088 0.99582 1.21966 0.95435 0.93182 0.92488 0.90403 1.21579 1.01953 0.99033 0.95309 1.22644 0.86536 0.93146 0.95338 0.91542 1.23091 0.94166 0.95548 0.98722 1.60662 1.03914 1.22286 1.45088 1.22676 0.93197 0.97043 0.98131 1.22798 0.89557 0.93890 0.95883 1.88216 1.16743 1.33024 1.91587 0.95658 0.92147 0.95686 0.93133 0.91366 0.94729 0.95669 0.91246 0.92728 0.92479 0.93085 0.91716 0.83606 0.96004 0.87585 0.92030 0.86696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 9.00 71.98 0.65 -5.38 16 2 C 0.19 9.59 1.50 44.17 0.07 9.66 16 3 H 0.01 0.58 4.08 -2.38 -0.01 0.57 16 4 C -0.52 -28.42 7.95 25.60 0.20 -28.22 16 5 H 0.05 3.04 5.72 -2.91 -0.02 3.02 16 6 C 0.01 0.82 5.29 84.66 0.45 1.27 16 7 N -0.92 -51.96 11.29 21.45 0.24 -51.72 16 8 Si 0.95 43.98 29.54 68.60 2.03 46.00 16 9 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 N -0.54 -22.97 4.46 -876.21 -3.91 -26.88 16 13 C 0.06 2.39 7.19 127.69 0.92 3.30 16 14 C 0.08 2.81 2.46 44.92 0.11 2.92 16 15 H 0.08 2.86 6.19 -2.39 -0.01 2.85 16 16 C -0.12 -3.61 9.21 71.98 0.66 -2.95 16 17 C 0.08 2.73 2.50 30.63 0.08 2.81 16 18 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 19 C 0.01 0.50 4.09 86.31 0.35 0.86 16 20 N -0.69 -20.73 6.92 -512.98 -3.55 -24.28 16 21 C 0.02 0.49 6.49 86.31 0.56 1.05 16 22 C 0.06 1.36 7.01 72.02 0.50 1.86 16 23 O -0.38 -11.71 5.60 -148.98 -0.83 -12.54 16 24 H 0.02 1.09 6.66 -2.39 -0.02 1.07 16 25 H 0.06 3.28 5.94 -2.39 -0.01 3.26 16 26 H 0.02 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 28 H 0.07 2.58 5.87 -2.39 -0.01 2.56 16 29 H 0.03 1.56 5.95 -2.39 -0.01 1.54 16 30 H 0.03 1.06 3.58 -2.39 -0.01 1.05 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.06 1.73 6.58 -2.39 -0.02 1.71 16 34 H 0.05 2.26 3.57 -2.39 -0.01 2.25 16 35 H 0.06 2.51 7.75 -2.39 -0.02 2.49 16 36 H 0.35 9.94 8.90 -89.70 -0.80 9.14 16 37 H 0.02 0.65 7.70 -2.38 -0.02 0.63 16 38 H 0.11 2.12 8.14 -2.39 -0.02 2.11 16 39 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.12 2.25 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -59.12 285.61 -1.23 -60.34 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: 0.25 Total: 21.90 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: 4.55 Total: -12.82 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -7.22 Total: -102.88 kcal Atomic # 8 Polarization: -11.71 SS G_CDS: -0.83 Total: -12.54 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Total: -59.12 -1.23 -60.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699712440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.950 kcal (2) G-P(sol) polarization free energy of solvation -59.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds