Wall clock time and date at job start Mon Mar 30 2020 04:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46961 * 2 1 4 4 C 1.52995 * 109.47192 * 240.00373 * 2 1 3 5 5 C 1.50697 * 109.47414 * 175.00114 * 4 2 1 6 6 H 1.08001 * 119.99468 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00194 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99929 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99871 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47103 * 89.99803 * 9 7 5 11 11 H 1.48503 * 109.47330 * 209.99613 * 9 7 5 12 12 H 1.48497 * 109.47283 * 329.99974 * 9 7 5 13 13 N 1.46893 * 109.46971 * 120.00417 * 2 1 3 14 14 C 1.46905 * 111.00045 * 274.99947 * 13 2 1 15 15 C 1.53003 * 109.47263 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.50478 * 185.06332 * 15 14 13 17 17 C 1.53087 * 109.50524 * 64.93219 * 15 14 13 18 18 O 1.43026 * 109.25938 * 183.21811 * 17 15 14 19 19 C 1.43016 * 113.73563 * 58.66366 * 18 17 15 20 20 C 1.53096 * 109.26447 * 301.33690 * 19 18 17 21 21 N 1.47008 * 109.50277 * 305.14788 * 15 14 13 22 22 C 1.46904 * 111.00441 * 302.32880 * 21 15 14 23 23 H 1.08996 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47157 * 299.99595 * 1 2 3 25 25 H 1.09000 * 109.46766 * 59.99670 * 1 2 3 26 26 H 1.09001 * 109.46995 * 54.99749 * 4 2 1 27 27 H 1.09000 * 109.47275 * 295.00089 * 4 2 1 28 28 H 0.97004 * 119.99817 * 180.02562 * 8 7 5 29 29 H 1.00896 * 111.00772 * 38.95214 * 13 2 1 30 30 H 1.09003 * 109.46821 * 300.00512 * 14 13 2 31 31 H 1.08999 * 109.46880 * 59.99805 * 14 13 2 32 32 H 1.08995 * 109.51198 * 303.14782 * 17 15 14 33 33 H 1.09006 * 109.51209 * 63.28337 * 17 15 14 34 34 H 1.09003 * 109.50259 * 181.39700 * 19 18 17 35 35 H 1.09006 * 109.50304 * 61.26877 * 19 18 17 36 36 H 1.09004 * 109.50361 * 296.91866 * 20 19 18 37 37 H 1.08991 * 109.54144 * 176.80173 * 20 19 18 38 38 H 1.08996 * 109.46994 * 66.01133 * 22 21 15 39 39 H 1.08994 * 109.47204 * 186.01864 * 22 21 15 40 40 H 1.08998 * 109.46751 * 306.01495 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5420 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1925 -2.3584 8 7 3.5764 -1.8367 -3.3001 9 14 6.0920 -1.0601 -2.4374 10 1 6.7008 -2.2127 -1.7261 11 1 6.5290 -1.0674 -3.8567 12 1 6.5261 0.2050 -1.7923 13 7 2.0197 -0.6926 1.1993 14 6 2.0825 0.2225 2.3469 15 6 2.5962 -0.5331 3.5742 16 1 2.5582 0.1201 4.4459 17 6 4.0402 -0.9801 3.3318 18 8 4.4899 -1.7497 4.4503 19 6 3.6940 -2.9096 4.7082 20 6 2.2464 -2.4822 4.9645 21 7 1.7555 -1.7158 3.8098 22 6 0.3486 -1.3341 3.9911 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2616 -2.1369 27 1 1.7517 -1.7714 -1.2057 28 1 4.0608 -2.2434 -4.0356 29 1 1.4496 -1.4980 1.4100 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 4.0861 -1.5891 2.4290 33 1 4.6775 -0.1037 3.2132 34 1 4.0809 -3.4288 5.5851 35 1 3.7297 -3.5747 3.8453 36 1 2.2034 -1.8604 5.8588 37 1 1.6247 -3.3663 5.1054 38 1 -0.0388 -0.9214 3.0596 39 1 -0.2334 -2.2127 4.2691 40 1 0.2741 -0.5848 4.7792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700205088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:44 Heat of formation + Delta-G solvation = -42.653531 kcal Electronic energy + Delta-G solvation = -18679.376821 eV Core-core repulsion = 15914.994488 eV Total energy + Delta-G solvation = -2764.382333 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69463 -36.81263 -35.40465 -32.92404 -31.84942 -29.39105 -28.46687 -27.16136 -25.23923 -24.03633 -22.95870 -22.16994 -19.65324 -19.60972 -16.36563 -16.21986 -16.05908 -15.41362 -14.97258 -14.82092 -14.44385 -14.30676 -13.65562 -13.55199 -13.14365 -12.58764 -12.35535 -12.18998 -11.80944 -11.73365 -11.64897 -11.49317 -11.22664 -10.96508 -10.75437 -10.51785 -10.38721 -10.26686 -9.96770 -9.49643 -9.17776 -8.91076 -8.32747 -8.19064 -7.42021 -5.81635 -3.78671 3.44159 3.49862 3.53207 3.79740 4.04662 4.62132 4.78403 4.92384 4.98070 5.13462 5.23517 5.35008 5.45310 5.49314 5.51178 5.56875 5.67483 5.75207 5.81576 5.88880 5.91937 5.95373 6.02598 6.06793 6.13966 6.42248 6.49835 6.69006 6.96912 7.00964 7.10295 7.34208 7.65875 7.78234 8.12001 8.15885 8.33568 8.67783 9.26490 9.82219 11.30623 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.007373 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.369838 B = 3796.979637 C = 4690.245313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.088 3.912 3 H 0.061 0.939 4 C 0.034 3.966 5 C -0.484 4.484 6 H 0.058 0.942 7 C 0.049 3.951 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.276 1.276 13 N -0.654 5.654 14 C 0.067 3.933 15 C 0.056 3.944 16 H 0.042 0.958 17 C 0.070 3.930 18 O -0.393 6.393 19 C 0.064 3.936 20 C 0.021 3.979 21 N -0.529 5.529 22 C 0.023 3.977 23 H 0.050 0.950 24 H 0.034 0.966 25 H 0.054 0.946 26 H 0.015 0.985 27 H 0.016 0.984 28 H 0.256 0.744 29 H 0.342 0.658 30 H 0.073 0.927 31 H 0.020 0.980 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 0.863 15.962 16.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.022 4.022 3 H 0.079 0.921 4 C -0.003 4.003 5 C -0.523 4.523 6 H 0.076 0.924 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.217 1.217 12 H -0.201 1.201 13 N -0.286 5.286 14 C -0.063 4.063 15 C -0.053 4.053 16 H 0.060 0.940 17 C -0.006 4.006 18 O -0.312 6.312 19 C -0.014 4.014 20 C -0.107 4.107 21 N -0.255 5.255 22 C -0.125 4.125 23 H 0.069 0.931 24 H 0.053 0.947 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.162 0.838 30 H 0.092 0.908 31 H 0.037 0.963 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -4.279 0.607 15.331 15.929 hybrid contribution -0.378 0.579 0.691 0.978 sum -4.657 1.186 16.022 16.728 Atomic orbital electron populations 1.22554 0.99836 1.01065 1.00316 1.21802 0.89675 0.98072 0.92638 0.92061 1.19091 0.96181 0.95379 0.89668 1.21136 0.91909 1.32630 1.06609 0.92397 1.25002 0.97861 0.96039 0.96098 1.69967 1.35081 1.37161 1.12422 0.86656 0.86649 0.78298 0.76686 1.20904 1.21717 1.20127 1.60458 1.58155 1.08379 1.01607 1.21926 0.98326 0.95514 0.90580 1.22402 0.94903 0.90731 0.97247 0.93979 1.22742 0.92003 0.96257 0.89614 1.87934 1.53783 1.38569 1.50887 1.22601 0.89078 0.88313 1.01378 1.22771 0.97619 0.98538 0.91778 1.62130 1.02240 1.22236 1.38891 1.22413 0.89224 0.99970 1.00884 0.93080 0.94701 0.92651 0.96672 0.96540 0.93430 0.83835 0.90834 0.96250 0.89439 0.88824 0.89087 0.91908 0.94595 0.89936 0.91036 0.91508 0.95931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.00 9.16 37.16 0.34 -2.66 16 2 C 0.09 1.75 2.53 -67.72 -0.17 1.58 16 3 H 0.06 1.25 7.80 -51.93 -0.40 0.85 16 4 C 0.03 0.87 4.65 -27.89 -0.13 0.74 16 5 C -0.48 -13.66 8.84 -34.44 -0.30 -13.96 16 6 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 8 N -0.91 -27.71 13.29 55.43 0.74 -26.98 16 9 Si 0.89 22.35 29.54 -169.99 -5.02 17.33 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 13 N -0.65 -11.98 5.36 -106.72 -0.57 -12.55 16 14 C 0.07 1.02 4.55 -3.82 -0.02 1.00 16 15 C 0.06 0.79 2.34 -67.61 -0.16 0.63 16 16 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 17 C 0.07 1.10 6.21 37.20 0.23 1.33 16 18 O -0.39 -6.03 10.83 -35.23 -0.38 -6.41 16 19 C 0.06 0.79 7.01 37.21 0.26 1.05 16 20 C 0.02 0.24 5.65 -3.71 -0.02 0.22 16 21 N -0.53 -6.97 3.91 -234.58 -0.92 -7.89 16 22 C 0.02 0.26 8.84 60.07 0.53 0.79 16 23 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 24 H 0.03 0.51 7.45 -51.93 -0.39 0.12 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.34 6.20 7.12 -39.29 -0.28 5.92 16 30 H 0.07 1.14 8.06 -51.93 -0.42 0.73 16 31 H 0.02 0.28 6.10 -51.93 -0.32 -0.04 16 32 H 0.09 1.60 7.67 -51.93 -0.40 1.21 16 33 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 38 H 0.07 0.86 6.40 -51.93 -0.33 0.53 16 39 H 0.07 0.66 8.04 -51.93 -0.42 0.24 16 40 H 0.02 0.24 8.12 -51.93 -0.42 -0.18 16 LS Contribution 313.68 15.07 4.73 4.73 Total: -1.00 -30.51 313.68 -8.11 -38.62 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -7.14 Total: 1.08 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: 0.46 Total: -7.93 kcal Atomic # 7 Polarization: -46.66 SS G_CDS: -0.75 Total: -47.41 kcal Atomic # 8 Polarization: -6.03 SS G_CDS: -0.38 Total: -6.41 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.51 -8.11 -38.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700205088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.033 kcal (2) G-P(sol) polarization free energy of solvation -30.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds