Wall clock time and date at job start Mon Mar 30 2020 04:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46961 * 2 1 4 4 C 1.52995 * 109.47192 * 240.00373 * 2 1 3 5 5 C 1.50697 * 109.47414 * 175.00114 * 4 2 1 6 6 H 1.08001 * 119.99468 * 359.97438 * 5 4 2 7 7 C 1.37879 * 120.00194 * 180.02562 * 5 4 2 8 8 N 1.31514 * 119.99929 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99871 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47103 * 89.99803 * 9 7 5 11 11 H 1.48503 * 109.47330 * 209.99613 * 9 7 5 12 12 H 1.48497 * 109.47283 * 329.99974 * 9 7 5 13 13 N 1.46893 * 109.46971 * 120.00417 * 2 1 3 14 14 C 1.46905 * 111.00045 * 274.99947 * 13 2 1 15 15 C 1.53003 * 109.47263 * 180.02562 * 14 13 2 16 16 H 1.08997 * 109.50478 * 185.06332 * 15 14 13 17 17 C 1.53087 * 109.50524 * 64.93219 * 15 14 13 18 18 O 1.43026 * 109.25938 * 183.21811 * 17 15 14 19 19 C 1.43016 * 113.73563 * 58.66366 * 18 17 15 20 20 C 1.53096 * 109.26447 * 301.33690 * 19 18 17 21 21 N 1.47008 * 109.50277 * 305.14788 * 15 14 13 22 22 C 1.46904 * 111.00441 * 302.32880 * 21 15 14 23 23 H 1.08996 * 109.47076 * 179.97438 * 1 2 3 24 24 H 1.08995 * 109.47157 * 299.99595 * 1 2 3 25 25 H 1.09000 * 109.46766 * 59.99670 * 1 2 3 26 26 H 1.09001 * 109.46995 * 54.99749 * 4 2 1 27 27 H 1.09000 * 109.47275 * 295.00089 * 4 2 1 28 28 H 0.97004 * 119.99817 * 180.02562 * 8 7 5 29 29 H 1.00896 * 111.00772 * 38.95214 * 13 2 1 30 30 H 1.09003 * 109.46821 * 300.00512 * 14 13 2 31 31 H 1.08999 * 109.46880 * 59.99805 * 14 13 2 32 32 H 1.08995 * 109.51198 * 303.14782 * 17 15 14 33 33 H 1.09006 * 109.51209 * 63.28337 * 17 15 14 34 34 H 1.09003 * 109.50259 * 181.39700 * 19 18 17 35 35 H 1.09006 * 109.50304 * 61.26877 * 19 18 17 36 36 H 1.09004 * 109.50361 * 296.91866 * 20 19 18 37 37 H 1.08991 * 109.54144 * 176.80173 * 20 19 18 38 38 H 1.08996 * 109.46994 * 66.01133 * 22 21 15 39 39 H 1.08994 * 109.47204 * 186.01864 * 22 21 15 40 40 H 1.08998 * 109.46751 * 306.01495 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5420 -0.6149 -1.3127 6 1 4.0789 -0.0855 -0.5396 7 6 4.2304 -1.1925 -2.3584 8 7 3.5764 -1.8367 -3.3001 9 14 6.0920 -1.0601 -2.4374 10 1 6.7008 -2.2127 -1.7261 11 1 6.5290 -1.0674 -3.8567 12 1 6.5261 0.2050 -1.7923 13 7 2.0197 -0.6926 1.1993 14 6 2.0825 0.2225 2.3469 15 6 2.5962 -0.5331 3.5742 16 1 2.5582 0.1201 4.4459 17 6 4.0402 -0.9801 3.3318 18 8 4.4899 -1.7497 4.4503 19 6 3.6940 -2.9096 4.7082 20 6 2.2464 -2.4822 4.9645 21 7 1.7555 -1.7158 3.8098 22 6 0.3486 -1.3341 3.9911 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.6054 -0.2616 -2.1369 27 1 1.7517 -1.7714 -1.2057 28 1 4.0608 -2.2434 -4.0356 29 1 1.4496 -1.4980 1.4100 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 4.0861 -1.5891 2.4290 33 1 4.6775 -0.1037 3.2132 34 1 4.0809 -3.4288 5.5851 35 1 3.7297 -3.5747 3.8453 36 1 2.2034 -1.8604 5.8588 37 1 1.6247 -3.3663 5.1054 38 1 -0.0388 -0.9214 3.0596 39 1 -0.2334 -2.2127 4.2691 40 1 0.2741 -0.5848 4.7792 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700205088.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:43 Heat of formation + Delta-G solvation = -64.593151 kcal Electronic energy + Delta-G solvation = -18680.328194 eV Core-core repulsion = 15914.994488 eV Total energy + Delta-G solvation = -2765.333706 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78416 -38.23565 -36.61625 -34.79538 -33.36804 -30.69677 -29.67068 -28.93765 -26.47294 -25.06056 -24.92051 -23.28834 -21.33663 -20.72809 -18.34032 -17.41739 -17.27397 -16.64985 -16.49758 -16.02646 -15.93714 -15.61747 -14.95876 -14.70114 -14.65181 -14.15936 -13.68829 -13.30685 -13.26484 -13.17687 -13.06365 -12.85985 -12.69633 -12.54920 -12.35611 -12.07653 -11.95375 -11.75982 -11.44185 -11.09493 -11.03702 -10.57036 -10.45069 -9.29436 -8.84729 -8.06013 -6.09909 1.42763 1.44608 1.54225 2.49908 2.81596 2.98028 3.26819 3.50287 3.90539 3.98748 4.01653 4.25300 4.29202 4.34794 4.37939 4.52549 4.57643 4.62087 4.63310 4.70827 4.74218 4.78825 4.91045 4.95986 5.01095 5.03451 5.18089 5.26774 5.33799 5.56148 5.72858 5.94787 6.00164 6.06141 6.22613 6.40803 6.58801 6.88238 7.04746 7.55316 9.06325 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.007373 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.369838 B = 3796.979637 C = 4690.245313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.098 3.902 3 H 0.058 0.942 4 C 0.039 3.961 5 C -0.492 4.492 6 H 0.058 0.942 7 C -0.008 4.008 8 N -0.943 5.943 9 Si 0.954 3.046 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.265 1.265 13 N -0.668 5.668 14 C 0.073 3.927 15 C 0.066 3.934 16 H 0.054 0.946 17 C 0.073 3.927 18 O -0.407 6.407 19 C 0.057 3.943 20 C 0.025 3.975 21 N -0.548 5.548 22 C 0.026 3.974 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.053 0.947 26 H -0.011 1.011 27 H -0.013 1.013 28 H 0.257 0.743 29 H 0.343 0.657 30 H 0.068 0.932 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.047 0.953 36 H 0.044 0.956 37 H 0.102 0.898 38 H 0.063 0.937 39 H 0.081 0.919 40 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.399 1.352 17.981 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 H 0.076 0.924 4 C 0.002 3.998 5 C -0.531 4.531 6 H 0.076 0.924 7 C -0.203 4.203 8 N -0.585 5.585 9 Si 0.780 3.220 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.189 1.189 13 N -0.300 5.300 14 C -0.057 4.057 15 C -0.043 4.043 16 H 0.072 0.928 17 C -0.004 4.004 18 O -0.326 6.326 19 C -0.020 4.020 20 C -0.103 4.103 21 N -0.274 5.274 22 C -0.122 4.122 23 H 0.068 0.932 24 H 0.082 0.918 25 H 0.072 0.928 26 H 0.008 0.992 27 H 0.006 0.994 28 H 0.066 0.934 29 H 0.163 0.837 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.136 0.864 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.121 0.879 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.512 1.104 17.372 17.983 hybrid contribution -0.320 0.381 0.094 0.506 sum -4.832 1.485 17.466 18.183 Atomic orbital electron populations 1.22394 0.97043 1.01482 1.01689 1.21459 0.91858 0.96816 0.91046 0.92385 1.18975 0.95094 0.94029 0.91729 1.21490 0.93382 1.31923 1.06265 0.92394 1.25851 1.02698 0.95889 0.95904 1.70100 1.36948 1.38319 1.13155 0.85607 0.80927 0.78627 0.76789 1.20601 1.21306 1.18944 1.60276 1.58457 1.09094 1.02222 1.21905 0.99242 0.94846 0.89736 1.22224 0.93921 0.91248 0.96937 0.92791 1.22603 0.93454 0.95763 0.88540 1.87911 1.54837 1.39465 1.50373 1.22829 0.89973 0.87325 1.01878 1.22788 0.96965 0.99190 0.91322 1.62106 1.03129 1.21966 1.40170 1.22420 0.88037 1.00955 1.00804 0.93161 0.91756 0.92777 0.99232 0.99437 0.93422 0.83749 0.91361 0.94380 0.92854 0.88705 0.86407 0.93415 0.93798 0.87932 0.91833 0.90014 0.94948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.37 9.16 71.98 0.66 -4.71 16 2 C 0.10 3.90 2.53 44.92 0.11 4.01 16 3 H 0.06 2.34 7.80 -2.39 -0.02 2.32 16 4 C 0.04 2.06 4.65 29.85 0.14 2.20 16 5 C -0.49 -28.23 8.84 25.60 0.23 -28.00 16 6 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 7 C -0.01 -0.47 5.46 84.66 0.46 -0.01 16 8 N -0.94 -58.99 13.29 21.45 0.28 -58.71 16 9 Si 0.95 46.34 29.54 68.60 2.03 48.37 16 10 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 11 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 N -0.67 -24.13 5.36 -491.56 -2.63 -26.77 16 14 C 0.07 2.08 4.55 86.30 0.39 2.48 16 15 C 0.07 1.74 2.34 44.92 0.11 1.84 16 16 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 17 C 0.07 2.26 6.21 72.01 0.45 2.70 16 18 O -0.41 -12.07 10.83 -148.98 -1.61 -13.68 16 19 C 0.06 1.32 7.01 72.01 0.50 1.83 16 20 C 0.03 0.51 5.65 86.31 0.49 1.00 16 21 N -0.55 -13.25 3.91 -896.09 -3.51 -16.76 16 22 C 0.03 0.50 8.84 127.69 1.13 1.63 16 23 H 0.05 1.61 8.13 -2.39 -0.02 1.60 16 24 H 0.06 1.70 7.45 -2.39 -0.02 1.68 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 27 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.34 12.23 7.12 -89.70 -0.64 11.60 16 30 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 31 H 0.04 0.97 6.10 -2.39 -0.01 0.96 16 32 H 0.05 1.99 7.67 -2.39 -0.02 1.98 16 33 H 0.09 2.80 8.14 -2.38 -0.02 2.78 16 34 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 37 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 38 H 0.06 1.34 6.40 -2.39 -0.02 1.33 16 39 H 0.08 1.35 8.04 -2.39 -0.02 1.33 16 40 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 Total: -1.00 -66.13 313.68 -0.42 -66.56 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.35 Total: 16.02 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: 4.67 Total: -15.03 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -5.85 Total: -102.24 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.61 Total: -13.68 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -66.13 -0.42 -66.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700205088.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.963 kcal (2) G-P(sol) polarization free energy of solvation -66.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds