Wall clock time and date at job start Mon Mar 30 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47183 * 2 1 4 4 C 1.52996 * 109.47049 * 239.99391 * 2 1 3 5 5 C 1.50703 * 109.46890 * 175.00098 * 4 2 1 6 6 H 1.08003 * 120.00217 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00095 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00542 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99756 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46925 * 90.00047 * 9 7 5 11 11 H 1.48495 * 109.47066 * 210.00030 * 9 7 5 12 12 H 1.48498 * 109.46959 * 330.00133 * 9 7 5 13 13 N 1.46907 * 109.47021 * 119.99599 * 2 1 3 14 14 C 1.46894 * 110.99897 * 275.00194 * 13 2 1 15 15 C 1.53004 * 109.47044 * 180.02562 * 14 13 2 16 16 H 1.08998 * 109.51165 * 174.72475 * 15 14 13 17 17 C 1.53099 * 109.50462 * 294.80862 * 15 14 13 18 18 O 1.43017 * 109.25909 * 176.82696 * 17 15 14 19 19 C 1.43010 * 113.73678 * 301.32552 * 18 17 15 20 20 C 1.53099 * 109.25639 * 58.67204 * 19 18 17 21 21 N 1.47005 * 109.54319 * 54.60983 * 15 14 13 22 22 C 1.46897 * 111.00093 * 57.65602 * 21 15 14 23 23 H 1.09000 * 109.47001 * 300.00575 * 1 2 3 24 24 H 1.09003 * 109.46605 * 59.99904 * 1 2 3 25 25 H 1.08991 * 109.47326 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47334 * 295.00182 * 4 2 1 27 27 H 1.09002 * 109.46821 * 55.00578 * 4 2 1 28 28 H 0.96999 * 120.00675 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99857 * 151.04356 * 13 2 1 30 30 H 1.08997 * 109.47759 * 59.99870 * 14 13 2 31 31 H 1.09000 * 109.47083 * 299.99690 * 14 13 2 32 32 H 1.08998 * 109.50906 * 56.89002 * 17 15 14 33 33 H 1.09003 * 109.54636 * 296.78486 * 17 15 14 34 34 H 1.09000 * 109.51559 * 298.73649 * 19 18 17 35 35 H 1.09004 * 109.50560 * 178.60521 * 19 18 17 36 36 H 1.09007 * 109.50406 * 63.08509 * 20 19 18 37 37 H 1.09004 * 109.50805 * 183.21009 * 20 19 18 38 38 H 1.09006 * 109.47567 * 177.40525 * 22 21 15 39 39 H 1.09005 * 109.46992 * 297.40267 * 22 21 15 40 40 H 1.08998 * 109.47379 * 57.39935 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5391 7 6 4.2304 -1.1928 -2.3581 8 7 5.5411 -1.1005 -2.4133 9 14 3.3014 -2.1069 -3.6964 10 1 2.9407 -1.1610 -4.7830 11 1 4.1596 -3.1873 -4.2452 12 1 2.0652 -2.6988 -3.1248 13 7 2.0197 -0.6924 1.1995 14 6 2.0824 0.2227 2.3469 15 6 2.5962 -0.5327 3.5743 16 1 2.7320 0.1650 4.4006 17 6 1.5822 -1.6077 3.9743 18 8 2.1006 -2.3588 5.0755 19 6 3.3509 -2.9961 4.7998 20 6 4.3828 -1.9352 4.4080 21 7 3.8808 -1.1725 3.2558 22 6 4.8678 -0.1794 2.8115 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.7517 -1.7716 -1.2054 27 1 1.6054 -0.2618 -2.1369 28 1 6.0255 -1.5073 -3.1486 29 1 2.9173 -1.1205 1.0289 30 1 1.0871 0.6165 2.5525 31 1 2.7589 1.0463 2.1182 32 1 1.4059 -2.2741 3.1300 33 1 0.6447 -1.1342 4.2660 34 1 3.2262 -3.7029 3.9794 35 1 3.6931 -3.5260 5.6887 36 1 4.5473 -1.2598 5.2478 37 1 5.3215 -2.4212 4.1419 38 1 5.8220 -0.6728 2.6265 39 1 4.5193 0.2935 1.8932 40 1 4.9944 0.5782 3.5848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700205090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:47 Heat of formation + Delta-G solvation = -43.857923 kcal Electronic energy + Delta-G solvation = -18763.987819 eV Core-core repulsion = 15999.553260 eV Total energy + Delta-G solvation = -2764.434559 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.63797 -36.80906 -35.36383 -32.93574 -31.91566 -29.47119 -28.42673 -27.82144 -25.24058 -23.90732 -22.75607 -21.96504 -19.60672 -19.29096 -16.81394 -16.27229 -16.13809 -15.51049 -14.99909 -14.73784 -14.31240 -14.17840 -14.04737 -13.51751 -12.87635 -12.41143 -12.28183 -12.21452 -12.01618 -11.76877 -11.57833 -11.47836 -11.35913 -10.98786 -10.72759 -10.65765 -10.35562 -10.26820 -9.74874 -9.46337 -9.40554 -9.16856 -8.53114 -8.14736 -7.58212 -6.04361 -4.01834 3.32187 3.40122 3.45404 3.92993 4.03677 4.46737 4.82558 5.01259 5.09530 5.18394 5.29013 5.34326 5.44389 5.55284 5.67887 5.74765 5.77070 5.80453 5.90554 5.93506 6.01206 6.05707 6.13847 6.20799 6.31411 6.33749 6.46956 6.75759 6.82722 7.14065 7.15860 7.22428 7.30065 7.36272 7.78895 7.98317 8.42059 8.51847 8.97652 9.58919 11.08596 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.007057 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.641151 B = 3966.922191 C = 4478.693488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.094 3.906 3 H 0.031 0.969 4 C -0.017 4.017 5 C -0.519 4.519 6 H 0.069 0.931 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.879 3.121 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.264 1.264 13 N -0.676 5.676 14 C 0.066 3.934 15 C 0.054 3.946 16 H 0.042 0.958 17 C 0.074 3.926 18 O -0.394 6.394 19 C 0.065 3.935 20 C 0.020 3.980 21 N -0.526 5.526 22 C 0.024 3.976 23 H 0.039 0.961 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.025 0.975 27 H 0.015 0.985 28 H 0.262 0.738 29 H 0.370 0.630 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.035 0.965 37 H 0.085 0.915 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.301 -0.050 12.542 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.016 4.016 3 H 0.049 0.951 4 C -0.054 4.054 5 C -0.557 4.557 6 H 0.087 0.913 7 C -0.132 4.132 8 N -0.541 5.541 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.189 1.189 13 N -0.312 5.312 14 C -0.064 4.064 15 C -0.055 4.055 16 H 0.060 0.940 17 C -0.003 4.003 18 O -0.313 6.313 19 C -0.013 4.013 20 C -0.108 4.108 21 N -0.251 5.251 22 C -0.124 4.124 23 H 0.058 0.942 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.043 0.957 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.194 0.806 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.097 0.903 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -5.918 -0.703 12.385 13.744 hybrid contribution 0.873 0.807 -0.649 1.355 sum -5.045 0.104 11.737 12.775 Atomic orbital electron populations 1.21828 0.96815 1.01286 0.99603 1.21393 0.93128 0.95918 0.91115 0.95076 1.19759 0.96998 0.96249 0.92422 1.21056 0.89849 1.35091 1.09662 0.91299 1.24985 0.94666 0.95682 0.97858 1.69908 1.06550 1.45377 1.32256 0.86783 0.80358 0.79899 0.82254 1.20530 1.21536 1.18868 1.60538 1.36297 1.30961 1.03452 1.21898 0.99321 0.93945 0.91249 1.22375 0.90730 0.95738 0.96650 0.93994 1.22665 0.94904 0.93078 0.89629 1.87913 1.37069 1.67547 1.38765 1.22618 0.83498 0.94131 1.01008 1.22773 0.99101 0.96842 0.92116 1.62092 1.03157 1.26343 1.33555 1.22442 0.95885 0.93866 1.00181 0.94227 0.93497 0.92662 0.95665 0.96706 0.92840 0.80611 0.91433 0.95502 0.90331 0.89159 0.91981 0.89046 0.94655 0.89706 0.91070 0.90203 0.96321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.42 37.16 0.35 -1.94 16 2 C 0.09 1.87 2.59 -67.71 -0.18 1.69 16 3 H 0.03 0.65 7.80 -51.93 -0.40 0.24 16 4 C -0.02 -0.39 3.64 -27.88 -0.10 -0.49 16 5 C -0.52 -14.24 8.67 -34.44 -0.30 -14.54 16 6 H 0.07 2.02 7.73 -52.48 -0.41 1.61 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 9 Si 0.88 21.72 27.47 -169.99 -4.67 17.05 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 13 N -0.68 -12.60 5.71 -106.72 -0.61 -13.21 16 14 C 0.07 1.05 4.54 -3.82 -0.02 1.03 16 15 C 0.05 0.79 2.35 -67.60 -0.16 0.63 16 16 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 17 C 0.07 1.05 6.22 37.21 0.23 1.28 16 18 O -0.39 -5.72 10.83 -35.23 -0.38 -6.10 16 19 C 0.06 0.81 7.01 37.21 0.26 1.08 16 20 C 0.02 0.26 5.66 -3.71 -0.02 0.24 16 21 N -0.53 -8.10 3.91 -234.57 -0.92 -9.02 16 22 C 0.02 0.38 8.89 60.06 0.53 0.91 16 23 H 0.04 0.59 7.45 -51.93 -0.39 0.20 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.03 0.61 7.20 -51.93 -0.37 0.24 16 27 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.37 7.91 5.87 -39.29 -0.23 7.68 16 30 H 0.07 0.97 7.44 -51.93 -0.39 0.58 16 31 H 0.03 0.45 6.66 -51.93 -0.35 0.10 16 32 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.08 1.03 8.12 -51.93 -0.42 0.60 16 38 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 39 H 0.08 1.43 6.25 -51.93 -0.32 1.11 16 40 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 308.41 15.07 4.65 4.65 Total: -1.00 -29.30 308.41 -7.69 -36.99 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -7.04 Total: 4.35 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: 0.51 Total: -8.23 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.75 Total: -48.70 kcal Atomic # 8 Polarization: -5.72 SS G_CDS: -0.38 Total: -6.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.67 Total: 17.05 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.30 -7.69 -36.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700205090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.869 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds