Wall clock time and date at job start Mon Mar 30 2020 04:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.47183 * 2 1 4 4 C 1.52996 * 109.47049 * 239.99391 * 2 1 3 5 5 C 1.50703 * 109.46890 * 175.00098 * 4 2 1 6 6 H 1.08003 * 120.00217 * 0.02562 * 5 4 2 7 7 C 1.37877 * 120.00095 * 180.02562 * 5 4 2 8 8 N 1.31510 * 120.00542 * 180.02562 * 7 5 4 9 9 Si 1.86807 * 119.99756 * 0.02562 * 7 5 4 10 10 H 1.48503 * 109.46925 * 90.00047 * 9 7 5 11 11 H 1.48495 * 109.47066 * 210.00030 * 9 7 5 12 12 H 1.48498 * 109.46959 * 330.00133 * 9 7 5 13 13 N 1.46907 * 109.47021 * 119.99599 * 2 1 3 14 14 C 1.46894 * 110.99897 * 275.00194 * 13 2 1 15 15 C 1.53004 * 109.47044 * 180.02562 * 14 13 2 16 16 H 1.08998 * 109.51165 * 174.72475 * 15 14 13 17 17 C 1.53099 * 109.50462 * 294.80862 * 15 14 13 18 18 O 1.43017 * 109.25909 * 176.82696 * 17 15 14 19 19 C 1.43010 * 113.73678 * 301.32552 * 18 17 15 20 20 C 1.53099 * 109.25639 * 58.67204 * 19 18 17 21 21 N 1.47005 * 109.54319 * 54.60983 * 15 14 13 22 22 C 1.46897 * 111.00093 * 57.65602 * 21 15 14 23 23 H 1.09000 * 109.47001 * 300.00575 * 1 2 3 24 24 H 1.09003 * 109.46605 * 59.99904 * 1 2 3 25 25 H 1.08991 * 109.47326 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47334 * 295.00182 * 4 2 1 27 27 H 1.09002 * 109.46821 * 55.00578 * 4 2 1 28 28 H 0.96999 * 120.00675 * 179.97438 * 8 7 5 29 29 H 1.00896 * 110.99857 * 151.04356 * 13 2 1 30 30 H 1.08997 * 109.47759 * 59.99870 * 14 13 2 31 31 H 1.09000 * 109.47083 * 299.99690 * 14 13 2 32 32 H 1.08998 * 109.50906 * 56.89002 * 17 15 14 33 33 H 1.09003 * 109.54636 * 296.78486 * 17 15 14 34 34 H 1.09000 * 109.51559 * 298.73649 * 19 18 17 35 35 H 1.09004 * 109.50560 * 178.60521 * 19 18 17 36 36 H 1.09007 * 109.50406 * 63.08509 * 20 19 18 37 37 H 1.09004 * 109.50805 * 183.21009 * 20 19 18 38 38 H 1.09006 * 109.47567 * 177.40525 * 22 21 15 39 39 H 1.09005 * 109.46992 * 297.40267 * 22 21 15 40 40 H 1.08998 * 109.47379 * 57.39935 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 6 3.5419 -0.6150 -1.3126 6 1 4.0791 -0.0862 -0.5391 7 6 4.2304 -1.1928 -2.3581 8 7 5.5411 -1.1005 -2.4133 9 14 3.3014 -2.1069 -3.6964 10 1 2.9407 -1.1610 -4.7830 11 1 4.1596 -3.1873 -4.2452 12 1 2.0652 -2.6988 -3.1248 13 7 2.0197 -0.6924 1.1995 14 6 2.0824 0.2227 2.3469 15 6 2.5962 -0.5327 3.5743 16 1 2.7320 0.1650 4.4006 17 6 1.5822 -1.6077 3.9743 18 8 2.1006 -2.3588 5.0755 19 6 3.3509 -2.9961 4.7998 20 6 4.3828 -1.9352 4.4080 21 7 3.8808 -1.1725 3.2558 22 6 4.8678 -0.1794 2.8115 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.7517 -1.7716 -1.2054 27 1 1.6054 -0.2618 -2.1369 28 1 6.0255 -1.5073 -3.1486 29 1 2.9173 -1.1205 1.0289 30 1 1.0871 0.6165 2.5525 31 1 2.7589 1.0463 2.1182 32 1 1.4059 -2.2741 3.1300 33 1 0.6447 -1.1342 4.2660 34 1 3.2262 -3.7029 3.9794 35 1 3.6931 -3.5260 5.6887 36 1 4.5473 -1.2598 5.2478 37 1 5.3215 -2.4212 4.1419 38 1 5.8220 -0.6728 2.6265 39 1 4.5193 0.2935 1.8932 40 1 4.9944 0.5782 3.5848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700205090.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:47 Heat of formation + Delta-G solvation = -65.206973 kcal Electronic energy + Delta-G solvation = -18764.913583 eV Core-core repulsion = 15999.553260 eV Total energy + Delta-G solvation = -2765.360323 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.79208 -38.24722 -36.64701 -34.78550 -33.48645 -30.87076 -29.69612 -29.50614 -26.52004 -25.09020 -24.55204 -23.22012 -21.11250 -20.62965 -18.93004 -17.47835 -17.27028 -16.85090 -16.43197 -16.05236 -15.92016 -15.53498 -15.44175 -14.73552 -14.61123 -14.07832 -13.79382 -13.50491 -13.43891 -13.26612 -13.09100 -12.82711 -12.60811 -12.43744 -12.35896 -12.03768 -11.82133 -11.68412 -11.45241 -11.23261 -11.15219 -10.72560 -10.58472 -9.31137 -9.07982 -8.24696 -6.26367 1.36550 1.39445 1.50999 2.39064 2.78523 2.98385 3.09833 3.50263 3.89716 3.97435 3.98714 4.24131 4.27642 4.32368 4.36429 4.48350 4.56826 4.58380 4.69461 4.72385 4.75494 4.79810 4.88581 4.94656 4.99554 5.07019 5.14092 5.16966 5.27673 5.38897 5.55366 5.72160 5.98898 6.02538 6.21411 6.29308 6.48200 6.74255 6.80303 7.37264 8.91105 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.024036 B = 0.007057 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.641151 B = 3966.922191 C = 4478.693488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.096 3.904 3 H 0.017 0.983 4 C -0.013 4.013 5 C -0.517 4.517 6 H 0.035 0.965 7 C 0.010 3.990 8 N -0.947 5.947 9 Si 0.944 3.056 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.250 1.250 13 N -0.673 5.673 14 C 0.069 3.931 15 C 0.059 3.941 16 H 0.052 0.948 17 C 0.079 3.921 18 O -0.402 6.402 19 C 0.064 3.936 20 C 0.021 3.979 21 N -0.547 5.547 22 C 0.033 3.967 23 H 0.061 0.939 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.021 0.979 27 H 0.019 0.981 28 H 0.263 0.737 29 H 0.352 0.648 30 H 0.088 0.912 31 H 0.014 0.986 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.052 0.948 35 H 0.121 0.879 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.048 0.952 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.166 -0.446 13.317 15.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.014 4.014 3 H 0.035 0.965 4 C -0.051 4.051 5 C -0.555 4.555 6 H 0.053 0.947 7 C -0.187 4.187 8 N -0.588 5.588 9 Si 0.769 3.231 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.174 1.174 13 N -0.307 5.307 14 C -0.061 4.061 15 C -0.050 4.050 16 H 0.070 0.930 17 C 0.002 3.998 18 O -0.321 6.321 19 C -0.013 4.013 20 C -0.107 4.107 21 N -0.272 5.272 22 C -0.115 4.115 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.173 0.827 30 H 0.107 0.893 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.128 0.872 34 H 0.070 0.930 35 H 0.139 0.861 36 H 0.062 0.938 37 H 0.110 0.890 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -7.812 -1.088 13.179 15.359 hybrid contribution 1.521 0.969 -0.817 1.980 sum -6.292 -0.118 12.362 13.872 Atomic orbital electron populations 1.21727 0.93692 1.01874 1.01265 1.21354 0.95490 0.94512 0.90076 0.96515 1.19711 0.94248 0.96475 0.94635 1.21318 0.91989 1.33780 1.08388 0.94658 1.25870 0.95449 0.96888 1.00532 1.70054 1.08327 1.47040 1.33391 0.85745 0.79378 0.78676 0.79308 1.19556 1.21417 1.17364 1.60623 1.34950 1.31395 1.03766 1.21957 1.00241 0.93218 0.90682 1.22341 0.90536 0.95998 0.96110 0.93034 1.22631 0.95479 0.92532 0.89128 1.87907 1.37788 1.67604 1.38762 1.22764 0.82764 0.93731 1.02052 1.22834 0.99558 0.96858 0.91466 1.62070 1.03489 1.26555 1.35131 1.22261 0.95645 0.94272 0.99297 0.91998 0.92486 0.92547 0.96075 0.96240 0.92811 0.82740 0.89334 0.96820 0.92192 0.87188 0.92998 0.86138 0.93790 0.89027 0.91485 0.93352 0.94654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 9.42 71.98 0.68 -3.25 16 2 C 0.10 3.72 2.59 44.91 0.12 3.84 16 3 H 0.02 0.70 7.80 -2.39 -0.02 0.68 16 4 C -0.01 -0.61 3.64 29.85 0.11 -0.50 16 5 C -0.52 -29.03 8.67 25.60 0.22 -28.80 16 6 H 0.04 2.17 7.73 -2.91 -0.02 2.15 16 7 C 0.01 0.55 5.47 84.66 0.46 1.02 16 8 N -0.95 -58.73 13.96 21.45 0.30 -58.43 16 9 Si 0.94 44.66 27.47 68.60 1.88 46.55 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 12 H -0.25 -11.15 6.54 99.48 0.65 -10.50 16 13 N -0.67 -24.93 5.71 -491.57 -2.81 -27.74 16 14 C 0.07 2.12 4.54 86.31 0.39 2.51 16 15 C 0.06 1.65 2.35 44.93 0.11 1.76 16 16 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 17 C 0.08 2.11 6.22 72.02 0.45 2.55 16 18 O -0.40 -10.82 10.83 -148.98 -1.61 -12.43 16 19 C 0.06 1.49 7.01 72.02 0.50 2.00 16 20 C 0.02 0.51 5.66 86.31 0.49 1.00 16 21 N -0.55 -16.66 3.91 -896.05 -3.50 -20.17 16 22 C 0.03 1.06 8.89 127.69 1.14 2.20 16 23 H 0.06 1.63 7.45 -2.39 -0.02 1.61 16 24 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.02 1.00 7.20 -2.39 -0.02 0.98 16 27 H 0.02 0.89 7.57 -2.39 -0.02 0.87 16 28 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.35 15.40 5.87 -89.70 -0.53 14.87 16 30 H 0.09 2.33 7.44 -2.39 -0.02 2.32 16 31 H 0.01 0.46 6.66 -2.39 -0.02 0.44 16 32 H 0.06 1.83 7.68 -2.39 -0.02 1.81 16 33 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.12 2.11 8.14 -2.38 -0.02 2.09 16 36 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.09 2.12 8.12 -2.38 -0.02 2.10 16 38 H 0.07 2.13 8.10 -2.38 -0.02 2.11 16 39 H 0.05 1.83 6.25 -2.38 -0.01 1.81 16 40 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -63.32 308.41 -0.67 -63.99 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: 0.41 Total: 23.91 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 4.66 Total: -15.68 kcal Atomic # 7 Polarization: -100.32 SS G_CDS: -6.01 Total: -106.34 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: -1.61 Total: -12.43 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 1.88 Total: 46.55 kcal Total: -63.32 -0.67 -63.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700205090.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.219 kcal (2) G-P(sol) polarization free energy of solvation -63.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds