Wall clock time and date at job start Mon Mar 30 2020 04:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47018 * 2 1 4 4 C 1.52994 * 109.47122 * 120.00096 * 2 1 3 5 5 C 1.50694 * 109.47172 * 185.00061 * 4 2 1 6 6 H 1.07997 * 120.00365 * 0.02562 * 5 4 2 7 7 C 1.37882 * 119.99962 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99681 * 180.02562 * 7 5 4 9 9 Si 1.86793 * 120.00184 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47215 * 89.99427 * 9 7 5 11 11 H 1.48495 * 109.47313 * 209.99854 * 9 7 5 12 12 H 1.48502 * 109.47060 * 329.99796 * 9 7 5 13 13 N 1.46898 * 109.47025 * 240.00024 * 2 1 3 14 14 C 1.46900 * 111.00215 * 85.00009 * 13 2 1 15 15 C 1.52998 * 109.47467 * 185.15713 * 14 13 2 16 16 H 1.08993 * 109.50639 * 303.59006 * 15 14 13 17 17 C 1.53101 * 109.50444 * 63.67398 * 15 14 13 18 18 O 1.43022 * 109.25597 * 176.73547 * 17 15 14 19 19 C 1.43017 * 113.77889 * 301.40341 * 18 17 15 20 20 C 1.53097 * 109.25853 * 58.64078 * 19 18 17 21 21 N 1.47012 * 109.25753 * 303.15148 * 20 19 18 22 22 C 1.46905 * 111.00066 * 182.39172 * 21 20 19 23 23 H 1.09001 * 109.47165 * 299.99849 * 1 2 3 24 24 H 1.09007 * 109.47131 * 60.00217 * 1 2 3 25 25 H 1.09000 * 109.47018 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47331 * 305.00354 * 4 2 1 27 27 H 1.09004 * 109.47184 * 64.99747 * 4 2 1 28 28 H 0.97002 * 119.99892 * 180.02562 * 8 7 5 29 29 H 1.00894 * 110.99882 * 208.95148 * 13 2 1 30 30 H 1.09006 * 109.46888 * 305.15822 * 14 13 2 31 31 H 1.09001 * 109.46915 * 65.15150 * 14 13 2 32 32 H 1.08997 * 109.50847 * 296.71799 * 17 15 14 33 33 H 1.09007 * 109.50502 * 56.84920 * 17 15 14 34 34 H 1.08997 * 109.50241 * 298.70641 * 19 18 17 35 35 H 1.08990 * 109.50898 * 178.57927 * 19 18 17 36 36 H 1.08997 * 109.50290 * 183.22131 * 20 19 18 37 37 H 1.08995 * 109.50890 * 63.08744 * 20 19 18 38 38 H 1.08998 * 109.47147 * 290.05507 * 22 21 20 39 39 H 1.09005 * 109.46701 * 50.05159 * 22 21 20 40 40 H 1.08998 * 109.47430 * 170.05217 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5418 -0.6149 1.3127 6 1 4.0789 -0.0855 0.5396 7 6 4.2303 -1.1927 2.3583 8 7 5.5410 -1.0994 2.4140 9 14 3.3014 -2.1078 3.6958 10 1 3.1708 -3.5380 3.3179 11 1 4.0446 -2.0002 4.9769 12 1 1.9503 -1.5128 3.8560 13 7 2.0197 -0.6925 -1.1994 14 6 2.0825 0.2226 -2.3469 15 6 2.4718 -0.5600 -3.6026 16 1 3.4166 -1.0759 -3.4316 17 6 1.3809 -1.5846 -3.9252 18 8 1.7130 -2.2601 -5.1413 19 6 1.8613 -1.3868 -6.2641 20 6 2.9575 -0.3609 -5.9646 21 7 2.6167 0.3676 -4.7340 22 6 3.6168 1.4030 -4.4410 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6053 -0.2618 2.1370 27 1 1.7516 -1.7715 1.2055 28 1 6.0254 -1.5062 3.1494 29 1 2.9173 -1.1204 -1.0287 30 1 1.1072 0.6863 -2.4956 31 1 2.8268 0.9954 -2.1550 32 1 1.3102 -2.3087 -3.1135 33 1 0.4251 -1.0739 -4.0426 34 1 0.9198 -0.8698 -6.4497 35 1 2.1374 -1.9683 -7.1436 36 1 3.0346 0.3420 -6.7941 37 1 3.9098 -0.8741 -5.8318 38 1 4.5516 0.9303 -4.1397 39 1 3.7860 2.0073 -5.3323 40 1 3.2549 2.0397 -3.6337 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700205093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:51 Heat of formation + Delta-G solvation = -68.564585 kcal Electronic energy + Delta-G solvation = -18332.125533 eV Core-core repulsion = 15566.619613 eV Total energy + Delta-G solvation = -2765.505920 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.78262 -38.32836 -36.78457 -34.88710 -33.54780 -31.02733 -29.75146 -29.41557 -26.58959 -25.12181 -24.60967 -23.00987 -21.33271 -20.84545 -18.97332 -17.47679 -17.34779 -16.80684 -16.55273 -16.20430 -15.89591 -15.77919 -15.17183 -14.79585 -14.67343 -14.14876 -14.01438 -13.48707 -13.42142 -13.37735 -13.13565 -12.91866 -12.58768 -12.53015 -12.24667 -12.02339 -11.86241 -11.77465 -11.52932 -11.26575 -11.21486 -10.76624 -10.61779 -9.50373 -9.23809 -8.29583 -6.32834 1.37642 1.38187 1.50078 2.36465 2.64639 2.94115 3.05943 3.49444 3.77402 3.96103 4.02013 4.11040 4.24641 4.26369 4.32856 4.50819 4.54053 4.58298 4.64179 4.69245 4.72309 4.76491 4.83153 4.95276 4.95646 5.04823 5.11371 5.13745 5.23831 5.34746 5.50294 5.67388 5.85010 5.93032 6.20746 6.22061 6.32916 6.50961 6.73512 7.31891 8.86628 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.029460 B = 0.005448 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.209050 B = 5138.132625 C = 5338.214514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.100 3.900 3 H 0.020 0.980 4 C -0.013 4.013 5 C -0.523 4.523 6 H 0.031 0.969 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.950 3.050 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.246 1.246 13 N -0.680 5.680 14 C 0.076 3.924 15 C 0.060 3.940 16 H 0.024 0.976 17 C 0.086 3.914 18 O -0.408 6.408 19 C 0.058 3.942 20 C 0.017 3.983 21 N -0.539 5.539 22 C 0.021 3.979 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.025 0.975 27 H 0.024 0.976 28 H 0.265 0.735 29 H 0.340 0.660 30 H 0.084 0.916 31 H 0.018 0.982 32 H 0.100 0.900 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.030 0.970 38 H 0.014 0.986 39 H 0.091 0.909 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.611 2.328 -15.471 18.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.010 4.010 3 H 0.038 0.962 4 C -0.051 4.051 5 C -0.562 4.562 6 H 0.049 0.951 7 C -0.190 4.190 8 N -0.591 5.591 9 Si 0.774 3.226 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.170 1.170 13 N -0.313 5.313 14 C -0.054 4.054 15 C -0.049 4.049 16 H 0.042 0.958 17 C 0.009 3.991 18 O -0.327 6.327 19 C -0.018 4.018 20 C -0.111 4.111 21 N -0.265 5.265 22 C -0.126 4.126 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.074 0.926 29 H 0.159 0.841 30 H 0.103 0.897 31 H 0.036 0.964 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.136 0.864 36 H 0.129 0.871 37 H 0.049 0.951 38 H 0.033 0.967 39 H 0.110 0.890 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.522 2.079 -15.631 18.956 hybrid contribution 2.122 0.155 1.262 2.474 sum -8.400 2.233 -14.369 16.793 Atomic orbital electron populations 1.21739 0.93420 1.02140 1.01353 1.21320 0.95593 0.94617 0.89432 0.96201 1.19721 0.93977 0.96624 0.94750 1.21344 0.92202 1.34055 1.08552 0.95095 1.25955 0.95475 0.96893 1.00663 1.70070 1.08542 1.46966 1.33541 0.85660 0.79678 0.79365 0.77919 1.19417 1.21378 1.16987 1.60592 1.33743 1.32387 1.04539 1.21848 1.00862 0.93353 0.89296 1.22141 0.98304 0.93482 0.90991 0.95811 1.22547 0.95712 0.94549 0.86246 1.87966 1.91186 1.35128 1.18459 1.22873 0.98084 0.91782 0.89084 1.22915 0.97643 0.97355 0.93211 1.62259 1.47353 1.13768 1.03094 1.22467 0.92400 0.94842 1.02941 0.92192 0.92184 0.92210 0.95697 0.95733 0.92645 0.84145 0.89743 0.96359 0.88174 0.91835 0.91520 0.86402 0.87099 0.95146 0.96714 0.89008 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.92 9.41 71.98 0.68 -3.25 16 2 C 0.10 3.85 2.59 44.91 0.12 3.97 16 3 H 0.02 0.82 7.86 -2.39 -0.02 0.80 16 4 C -0.01 -0.60 3.64 29.84 0.11 -0.49 16 5 C -0.52 -29.36 8.67 25.60 0.22 -29.14 16 6 H 0.03 1.91 7.73 -2.91 -0.02 1.89 16 7 C 0.01 0.41 5.47 84.66 0.46 0.87 16 8 N -0.95 -59.25 13.96 21.45 0.30 -58.95 16 9 Si 0.95 44.26 27.47 68.60 1.88 46.14 16 10 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 12 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 13 N -0.68 -25.03 5.74 -491.57 -2.82 -27.86 16 14 C 0.08 2.41 4.67 86.30 0.40 2.82 16 15 C 0.06 1.77 2.23 44.93 0.10 1.87 16 16 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 17 C 0.09 2.42 6.13 72.02 0.44 2.86 16 18 O -0.41 -11.33 10.82 -148.98 -1.61 -12.94 16 19 C 0.06 1.17 7.01 72.01 0.50 1.67 16 20 C 0.02 0.34 5.64 86.31 0.49 0.83 16 21 N -0.54 -13.43 4.80 -896.07 -4.30 -17.73 16 22 C 0.02 0.50 9.01 127.69 1.15 1.65 16 23 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 1.61 7.39 -2.38 -0.02 1.59 16 25 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 26 H 0.02 1.13 7.20 -2.38 -0.02 1.11 16 27 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 28 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 29 H 0.34 14.60 7.26 -89.70 -0.65 13.95 16 30 H 0.08 2.48 7.33 -2.38 -0.02 2.46 16 31 H 0.02 0.63 6.32 -2.39 -0.02 0.61 16 32 H 0.10 3.02 7.81 -2.39 -0.02 3.00 16 33 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 1.67 8.09 -2.39 -0.02 1.65 16 37 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.01 0.38 8.12 -2.39 -0.02 0.36 16 39 H 0.09 1.65 8.04 -2.38 -0.02 1.63 16 40 H 0.07 1.68 6.56 -2.39 -0.02 1.66 16 Total: -1.00 -64.04 310.60 -1.59 -65.62 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: 0.29 Total: 22.04 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 4.67 Total: -16.33 kcal Atomic # 7 Polarization: -97.72 SS G_CDS: -6.82 Total: -104.54 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -1.61 Total: -12.94 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.88 Total: 46.14 kcal Total: -64.04 -1.59 -65.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700205093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.941 kcal (2) G-P(sol) polarization free energy of solvation -64.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds