Wall clock time and date at job start Mon Mar 30 2020 04:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46528 * 2 1 4 4 C 1.52989 * 109.47337 * 120.00187 * 2 1 3 5 5 C 1.50700 * 109.47553 * 185.00131 * 4 2 1 6 6 H 1.08006 * 119.99364 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00401 * 179.97438 * 5 4 2 8 8 N 1.31511 * 120.00317 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99782 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47389 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47321 * 120.00490 * 9 7 5 12 12 H 1.48512 * 109.46911 * 239.99908 * 9 7 5 13 13 N 1.46901 * 109.47046 * 240.00709 * 2 1 3 14 14 C 1.46901 * 111.00413 * 84.99706 * 13 2 1 15 15 C 1.53001 * 109.46930 * 174.78475 * 14 13 2 16 16 H 1.08993 * 109.50735 * 56.17210 * 15 14 13 17 17 C 1.53091 * 109.50694 * 296.03583 * 15 14 13 18 18 O 1.43014 * 109.25812 * 183.22059 * 17 15 14 19 19 C 1.43109 * 113.76226 * 58.67287 * 18 17 15 20 20 C 1.53098 * 109.20691 * 301.35359 * 19 18 17 21 21 N 1.47012 * 109.29301 * 56.83188 * 20 19 18 22 22 C 1.46894 * 111.00074 * 177.58488 * 21 20 19 23 23 H 1.09002 * 109.47049 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.47329 * 299.99449 * 1 2 3 25 25 H 1.09003 * 109.47392 * 59.99999 * 1 2 3 26 26 H 1.09000 * 109.47269 * 305.00141 * 4 2 1 27 27 H 1.09000 * 109.47510 * 65.00172 * 4 2 1 28 28 H 0.96999 * 119.99984 * 180.02562 * 8 7 5 29 29 H 1.00907 * 110.99776 * 321.04168 * 13 2 1 30 30 H 1.08995 * 109.46739 * 54.78273 * 14 13 2 31 31 H 1.08998 * 109.46679 * 294.78236 * 14 13 2 32 32 H 1.08999 * 109.50622 * 303.15529 * 17 15 14 33 33 H 1.09003 * 109.50548 * 63.23874 * 17 15 14 34 34 H 1.08997 * 109.56420 * 181.41471 * 19 18 17 35 35 H 1.08997 * 109.49759 * 61.25587 * 19 18 17 36 36 H 1.08996 * 109.50782 * 296.87361 * 20 19 18 37 37 H 1.08995 * 109.50615 * 176.78345 * 20 19 18 38 38 H 1.08995 * 109.47504 * 66.59313 * 22 21 20 39 39 H 1.09009 * 109.47347 * 186.59324 * 22 21 20 40 40 H 1.09004 * 109.47253 * 306.58775 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5419 -0.6149 1.3127 6 1 4.0789 -0.0854 0.5395 7 6 4.2304 -1.1926 2.3582 8 7 3.5765 -1.8369 3.2999 9 14 6.0920 -1.0601 2.4372 10 1 6.5837 -0.2908 1.2660 11 1 6.4861 -0.3639 3.6883 12 1 6.6863 -2.4210 2.4198 13 7 2.0197 -0.6924 -1.1995 14 6 2.0824 0.2228 -2.3470 15 6 2.7167 -0.4967 -3.5390 16 1 2.1537 -1.4038 -3.7582 17 6 4.1654 -0.8614 -3.2042 18 8 4.7759 -1.4659 -4.3475 19 6 4.7763 -0.6311 -5.5099 20 6 3.3335 -0.2643 -5.8670 21 7 2.6983 0.3882 -4.7129 22 6 1.3279 0.8083 -5.0340 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 1.6054 -0.2618 2.1369 27 1 1.7518 -1.7715 1.2055 28 1 4.0609 -2.2431 4.0356 29 1 1.4495 -1.4978 -1.4102 30 1 2.6846 1.0928 -2.0852 31 1 1.0749 0.5442 -2.6107 32 1 4.7142 0.0403 -2.9326 33 1 4.1807 -1.5621 -2.3694 34 1 5.2328 -1.1657 -6.3430 35 1 5.3429 0.2772 -5.3053 36 1 2.7810 -1.1681 -6.1237 37 1 3.3311 0.4176 -6.7174 38 1 0.7067 -0.0723 -5.1976 39 1 0.9226 1.3900 -4.2060 40 1 1.3372 1.4191 -5.9368 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700205096.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:54 Heat of formation + Delta-G solvation = -43.965360 kcal Electronic energy + Delta-G solvation = -18400.699425 eV Core-core repulsion = 15636.260207 eV Total energy + Delta-G solvation = -2764.439218 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.67349 -36.84324 -35.60513 -33.00489 -31.86913 -29.59221 -28.36614 -27.21275 -25.29158 -24.06201 -23.03481 -21.91229 -20.26015 -19.44862 -16.41415 -16.25423 -16.11224 -15.50507 -14.93643 -14.87600 -14.35160 -14.12740 -14.02407 -13.66009 -13.15103 -12.61608 -12.44027 -12.31843 -11.95473 -11.75886 -11.69709 -11.48028 -11.19176 -10.92418 -10.81625 -10.50582 -10.44331 -10.31368 -10.03529 -9.51759 -9.24174 -8.93278 -8.44415 -8.22558 -7.57785 -5.84707 -3.82205 3.41554 3.49197 3.54416 3.69452 4.03130 4.60195 4.75479 4.85847 4.96107 5.09667 5.16847 5.29300 5.40278 5.45028 5.46084 5.53393 5.61194 5.72253 5.73311 5.77643 5.90037 5.93352 6.02461 6.03912 6.19481 6.43989 6.44760 6.62855 6.88218 6.95432 7.02984 7.32741 7.56153 7.70457 8.02071 8.07315 8.18285 8.63063 9.23423 9.79356 11.27481 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.022122 B = 0.006746 C = 0.005378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.421577 B = 4149.694196 C = 5205.027654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.091 3.909 3 H 0.065 0.935 4 C 0.033 3.967 5 C -0.486 4.486 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.887 3.113 10 H -0.273 1.273 11 H -0.288 1.288 12 H -0.287 1.287 13 N -0.663 5.663 14 C 0.068 3.932 15 C 0.056 3.944 16 H 0.046 0.954 17 C 0.076 3.924 18 O -0.389 6.389 19 C 0.062 3.938 20 C 0.020 3.980 21 N -0.538 5.538 22 C 0.022 3.978 23 H 0.050 0.950 24 H 0.057 0.943 25 H 0.035 0.965 26 H 0.017 0.983 27 H 0.017 0.983 28 H 0.256 0.744 29 H 0.330 0.670 30 H 0.077 0.923 31 H 0.023 0.977 32 H 0.057 0.943 33 H 0.120 0.880 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.039 0.961 37 H 0.081 0.919 38 H 0.024 0.976 39 H 0.074 0.926 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.728 4.124 -17.131 18.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.018 4.018 3 H 0.083 0.917 4 C -0.005 4.005 5 C -0.525 4.525 6 H 0.077 0.923 7 C -0.150 4.150 8 N -0.546 5.546 9 Si 0.716 3.284 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.213 1.213 13 N -0.294 5.294 14 C -0.062 4.062 15 C -0.053 4.053 16 H 0.064 0.936 17 C 0.000 4.000 18 O -0.307 6.307 19 C -0.016 4.016 20 C -0.108 4.108 21 N -0.264 5.264 22 C -0.126 4.126 23 H 0.069 0.931 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.035 0.965 27 H 0.035 0.965 28 H 0.066 0.934 29 H 0.148 0.852 30 H 0.096 0.904 31 H 0.041 0.959 32 H 0.076 0.924 33 H 0.138 0.862 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.057 0.943 37 H 0.100 0.900 38 H 0.042 0.958 39 H 0.092 0.908 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.670 4.355 -16.690 17.455 hybrid contribution -0.665 -0.312 -0.350 0.814 sum -3.336 4.043 -17.040 17.828 Atomic orbital electron populations 1.22555 0.99578 1.01153 1.00559 1.21789 0.89812 0.98165 0.92022 0.91707 1.19119 0.96309 0.95388 0.89665 1.21174 0.91843 1.32701 1.06770 0.92281 1.25001 0.97947 0.95941 0.96065 1.69971 1.35078 1.37121 1.12385 0.86606 0.86554 0.77606 0.77629 1.19760 1.21476 1.21292 1.60448 1.57837 1.08581 1.02495 1.21935 0.97908 0.96328 0.90037 1.22290 0.98604 0.93925 0.90448 0.93643 1.22760 0.89856 0.99671 0.87731 1.88023 1.80126 1.42427 1.20146 1.22622 0.94713 0.95274 0.88976 1.22773 0.96517 0.97872 0.93648 1.62176 1.18673 1.40913 1.04652 1.22423 0.88670 0.99643 1.01838 0.93060 0.92435 0.94569 0.96486 0.96495 0.93428 0.85230 0.90422 0.95860 0.92418 0.86168 0.88941 0.92480 0.94251 0.90014 0.95761 0.90752 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 9.16 37.16 0.34 -2.62 16 2 C 0.09 1.80 2.53 -67.72 -0.17 1.63 16 3 H 0.06 1.32 7.72 -51.93 -0.40 0.92 16 4 C 0.03 0.82 4.65 -27.89 -0.13 0.69 16 5 C -0.49 -13.59 8.84 -34.44 -0.30 -13.90 16 6 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 9 Si 0.89 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 N -0.66 -11.92 5.41 -106.73 -0.58 -12.50 16 14 C 0.07 1.04 4.72 -3.82 -0.02 1.02 16 15 C 0.06 0.81 2.25 -67.60 -0.15 0.66 16 16 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 17 C 0.08 1.24 6.13 37.20 0.23 1.46 16 18 O -0.39 -6.11 10.83 -35.23 -0.38 -6.49 16 19 C 0.06 0.73 7.02 37.21 0.26 0.99 16 20 C 0.02 0.23 5.65 -3.71 -0.02 0.20 16 21 N -0.54 -6.85 4.80 -234.58 -1.12 -7.97 16 22 C 0.02 0.24 9.08 60.06 0.55 0.78 16 23 H 0.05 0.83 8.13 -51.93 -0.42 0.41 16 24 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 25 H 0.04 0.52 7.56 -51.93 -0.39 0.13 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.33 5.61 8.53 -39.29 -0.34 5.28 16 30 H 0.08 1.29 7.93 -51.93 -0.41 0.88 16 31 H 0.02 0.33 5.66 -51.93 -0.29 0.04 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.12 2.17 7.82 -51.93 -0.41 1.76 16 34 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.07 0.80 6.35 -51.92 -0.33 0.47 16 40 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 315.90 15.07 4.76 4.76 Total: -1.00 -30.40 315.90 -8.31 -38.71 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.18 Total: 0.75 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 0.48 Total: -7.73 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.97 Total: -47.22 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: -0.38 Total: -6.49 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.40 -8.31 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700205096.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.259 kcal (2) G-P(sol) polarization free energy of solvation -30.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds