Wall clock time and date at job start Mon Mar 30 2020 04:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47523 * 2 1 4 4 C 1.52999 * 109.46824 * 240.00050 * 2 1 3 5 5 C 1.50705 * 109.47100 * 174.99976 * 4 2 1 6 6 H 1.07998 * 119.99943 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99977 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00080 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99850 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47078 * 90.00079 * 9 7 5 11 11 H 1.48505 * 109.46857 * 209.99584 * 9 7 5 12 12 H 1.48493 * 109.47401 * 330.00192 * 9 7 5 13 13 N 1.46894 * 109.47371 * 120.00211 * 2 1 3 14 14 C 1.46900 * 110.99971 * 274.99565 * 13 2 1 15 15 C 1.53003 * 109.47179 * 179.97438 * 14 13 2 16 16 O 1.42902 * 110.64259 * 61.85061 * 15 14 13 17 17 C 1.54594 * 110.72619 * 185.00132 * 15 14 13 18 18 C 1.53991 * 105.14285 * 140.49275 * 17 15 14 19 19 N 1.47905 * 107.22505 * 1.12969 * 18 17 15 20 20 C 1.46897 * 111.00050 * 214.25344 * 19 18 17 21 21 C 1.48813 * 105.67450 * 334.90354 * 19 18 17 22 22 H 1.09009 * 109.46715 * 299.99618 * 1 2 3 23 23 H 1.09001 * 109.47230 * 59.99719 * 1 2 3 24 24 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47168 * 294.99974 * 4 2 1 26 26 H 1.09004 * 109.47194 * 54.99870 * 4 2 1 27 27 H 0.97002 * 120.00108 * 179.97438 * 8 7 5 28 28 H 1.00901 * 111.00394 * 38.95388 * 13 2 1 29 29 H 1.09003 * 109.47192 * 60.00609 * 14 13 2 30 30 H 1.08998 * 109.47464 * 300.00130 * 14 13 2 31 31 H 0.96699 * 113.99829 * 303.15230 * 16 15 14 32 32 H 1.09005 * 110.30718 * 21.58080 * 17 15 14 33 33 H 1.08997 * 110.30992 * 259.41600 * 17 15 14 34 34 H 1.09002 * 109.91707 * 120.58029 * 18 17 15 35 35 H 1.09002 * 109.91668 * 241.67819 * 18 17 15 36 36 H 1.09003 * 109.47065 * 59.87544 * 20 19 18 37 37 H 1.08999 * 109.47271 * 179.87278 * 20 19 18 38 38 H 1.09003 * 109.47401 * 299.87547 * 20 19 18 39 39 H 1.08998 * 110.51915 * 280.54171 * 21 19 18 40 40 H 1.09009 * 110.83927 * 157.56590 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1936 -2.3579 8 7 5.5410 -1.1004 -2.4136 9 14 3.3014 -2.1099 -3.6947 10 1 2.9397 -1.1657 -4.7823 11 1 4.1603 -3.1904 -4.2426 12 1 2.0659 -2.7020 -3.1220 13 7 2.0197 -0.6925 1.1993 14 6 2.0826 0.2226 2.3468 15 6 2.5952 -0.5332 3.5744 16 8 3.9177 -1.0248 3.3474 17 6 2.5549 0.3694 4.8288 18 6 2.0877 -0.5509 5.9717 19 7 1.9035 -1.9019 5.3986 20 6 0.7866 -2.6013 6.0478 21 6 1.6368 -1.6912 3.9498 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7515 -1.7715 -1.2056 26 1 1.6052 -0.2617 -2.1370 27 1 6.0254 -1.5078 -3.1487 28 1 1.4496 -1.4980 1.4100 29 1 1.0872 0.6163 2.5526 30 1 2.7589 1.0462 2.1181 31 1 3.9970 -1.5965 2.5716 32 1 1.8456 1.1846 4.6857 33 1 3.5481 0.7642 5.0429 34 1 2.8430 -0.5805 6.7570 35 1 1.1436 -0.1881 6.3782 36 1 -0.1313 -2.0310 5.9051 37 1 0.6717 -3.5911 5.6060 38 1 0.9906 -2.7007 7.1139 39 1 0.5990 -1.3985 3.7910 40 1 1.8741 -2.5880 3.3774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702554354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:03 Heat of formation + Delta-G solvation = -46.785847 kcal Electronic energy + Delta-G solvation = -18377.216782 eV Core-core repulsion = 15612.655259 eV Total energy + Delta-G solvation = -2764.561523 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.60232 -36.82717 -35.33200 -32.67051 -31.69695 -30.54983 -28.21890 -27.69812 -26.17273 -23.72387 -22.52507 -21.20496 -20.11932 -19.60116 -16.75832 -16.52942 -15.83279 -15.57722 -14.93841 -14.41902 -14.32253 -13.98018 -13.71075 -13.21606 -13.13339 -12.71613 -12.47559 -12.25576 -11.93474 -11.90842 -11.75822 -11.65152 -11.46837 -11.19809 -11.15372 -10.73236 -10.58013 -10.22947 -9.77652 -9.61072 -9.45185 -9.02130 -8.49242 -8.41001 -7.74894 -5.88966 -3.83305 3.36589 3.44786 3.46979 3.91184 4.39153 4.51675 4.55895 4.60151 4.81993 5.01517 5.19137 5.27228 5.30690 5.41982 5.46858 5.52339 5.55614 5.63848 5.69669 5.74134 5.76349 5.81022 5.84733 6.08429 6.12929 6.20151 6.31349 6.43819 6.73944 6.77177 6.92911 7.12768 7.28128 7.71700 7.87939 8.00467 8.21807 8.73471 9.22625 9.73849 11.24935 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031051 B = 0.005602 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.537995 B = 4996.916867 C = 5237.429676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.099 3.901 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.490 4.490 6 H 0.077 0.923 7 C 0.061 3.939 8 N -0.907 5.907 9 Si 0.874 3.126 10 H -0.281 1.281 11 H -0.290 1.290 12 H -0.269 1.269 13 N -0.662 5.662 14 C 0.040 3.960 15 C 0.140 3.860 16 O -0.543 6.543 17 C -0.121 4.121 18 C 0.039 3.961 19 N -0.514 5.514 20 C 0.016 3.984 21 C 0.009 3.991 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.050 0.950 25 H 0.015 0.985 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.328 0.672 29 H 0.025 0.975 30 H 0.082 0.918 31 H 0.392 0.608 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.024 0.976 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.046 0.954 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.602 0.702 14.379 18.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.010 4.010 3 H 0.089 0.911 4 C -0.042 4.042 5 C -0.529 4.529 6 H 0.096 0.904 7 C -0.138 4.138 8 N -0.548 5.548 9 Si 0.702 3.298 10 H -0.207 1.207 11 H -0.217 1.217 12 H -0.194 1.194 13 N -0.293 5.293 14 C -0.091 4.091 15 C 0.098 3.902 16 O -0.350 6.350 17 C -0.160 4.160 18 C -0.089 4.089 19 N -0.238 5.238 20 C -0.133 4.133 21 C -0.119 4.119 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.069 0.931 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.146 0.854 29 H 0.043 0.957 30 H 0.100 0.900 31 H 0.243 0.757 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.197 0.742 14.730 17.930 hybrid contribution -2.360 -0.305 -1.196 2.663 sum -12.557 0.437 13.534 18.467 Atomic orbital electron populations 1.22591 0.99448 1.01207 1.00940 1.21548 0.89663 0.98371 0.91415 0.91100 1.19607 0.97926 0.95335 0.91286 1.21028 0.89411 1.33812 1.08602 0.90444 1.25015 0.94664 0.96301 0.97851 1.69916 1.06420 1.46126 1.32289 0.86885 0.80172 0.80026 0.82684 1.20721 1.21655 1.19373 1.60420 1.57594 1.08646 1.02591 1.22614 0.98878 0.96654 0.90932 1.21852 0.83808 0.91662 0.92897 1.86402 1.26274 1.69930 1.52416 1.22430 1.03008 0.97300 0.93237 1.22847 1.00001 0.88424 0.97657 1.64745 1.39346 1.16957 1.02722 1.22531 0.91580 0.99250 0.99935 1.23995 0.97910 1.00368 0.89673 0.94129 0.92335 0.93064 0.96631 0.97028 0.93082 0.85387 0.95671 0.89984 0.75749 0.90518 0.89554 0.90267 0.94059 0.95734 0.91262 0.91437 0.93612 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.75 9.16 37.16 0.34 -2.41 16 2 C 0.10 1.85 2.53 -67.72 -0.17 1.68 16 3 H 0.07 1.39 7.80 -51.93 -0.40 0.99 16 4 C 0.00 -0.09 3.72 -27.88 -0.10 -0.19 16 5 C -0.49 -13.71 9.39 -34.44 -0.32 -14.03 16 6 H 0.08 2.37 7.99 -52.49 -0.42 1.95 16 7 C 0.06 1.79 5.47 -17.82 -0.10 1.69 16 8 N -0.91 -28.27 13.96 55.43 0.77 -27.49 16 9 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 13 N -0.66 -11.32 5.47 -106.73 -0.58 -11.90 16 14 C 0.04 0.59 4.64 -3.82 -0.02 0.57 16 15 C 0.14 1.98 1.14 -88.76 -0.10 1.88 16 16 O -0.54 -9.33 13.12 -35.23 -0.46 -9.79 16 17 C -0.12 -1.48 6.27 -25.38 -0.16 -1.63 16 18 C 0.04 0.44 6.69 -2.75 -0.02 0.42 16 19 N -0.51 -6.47 5.56 -238.46 -1.33 -7.79 16 20 C 0.02 0.16 9.41 60.06 0.57 0.72 16 21 C 0.01 0.11 4.78 -1.74 -0.01 0.10 16 22 H 0.04 0.54 7.45 -51.92 -0.39 0.15 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.05 0.74 8.13 -51.93 -0.42 0.32 16 25 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 26 H 0.01 0.27 7.57 -51.93 -0.39 -0.13 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 28 H 0.33 5.12 7.39 -39.29 -0.29 4.83 16 29 H 0.03 0.34 7.40 -51.93 -0.38 -0.05 16 30 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 31 H 0.39 6.75 8.60 45.56 0.39 7.14 16 32 H 0.08 0.80 7.82 -51.93 -0.41 0.39 16 33 H 0.09 1.10 8.08 -51.93 -0.42 0.68 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.04 0.40 7.73 -51.93 -0.40 0.00 16 36 H 0.02 0.23 8.01 -51.93 -0.42 -0.19 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.54 7.88 -51.93 -0.41 0.13 16 40 H 0.09 1.20 8.00 -51.92 -0.42 0.79 16 LS Contribution 315.54 15.07 4.76 4.76 Total: -1.00 -31.15 315.54 -8.03 -39.19 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -6.43 Total: 7.07 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.10 Total: -11.20 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -1.14 Total: -47.19 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.46 Total: -9.79 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.15 -8.03 -39.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702554354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.600 kcal (2) G-P(sol) polarization free energy of solvation -31.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds