Wall clock time and date at job start Mon Mar 30 2020 04:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47523 * 2 1 4 4 C 1.52999 * 109.46824 * 240.00050 * 2 1 3 5 5 C 1.50705 * 109.47100 * 174.99976 * 4 2 1 6 6 H 1.07998 * 119.99943 * 359.97438 * 5 4 2 7 7 C 1.37878 * 119.99977 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00080 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99850 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47078 * 90.00079 * 9 7 5 11 11 H 1.48505 * 109.46857 * 209.99584 * 9 7 5 12 12 H 1.48493 * 109.47401 * 330.00192 * 9 7 5 13 13 N 1.46894 * 109.47371 * 120.00211 * 2 1 3 14 14 C 1.46900 * 110.99971 * 274.99565 * 13 2 1 15 15 C 1.53003 * 109.47179 * 179.97438 * 14 13 2 16 16 O 1.42902 * 110.64259 * 61.85061 * 15 14 13 17 17 C 1.54594 * 110.72619 * 185.00132 * 15 14 13 18 18 C 1.53991 * 105.14285 * 140.49275 * 17 15 14 19 19 N 1.47905 * 107.22505 * 1.12969 * 18 17 15 20 20 C 1.46897 * 111.00050 * 214.25344 * 19 18 17 21 21 C 1.48813 * 105.67450 * 334.90354 * 19 18 17 22 22 H 1.09009 * 109.46715 * 299.99618 * 1 2 3 23 23 H 1.09001 * 109.47230 * 59.99719 * 1 2 3 24 24 H 1.08996 * 109.47169 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47168 * 294.99974 * 4 2 1 26 26 H 1.09004 * 109.47194 * 54.99870 * 4 2 1 27 27 H 0.97002 * 120.00108 * 179.97438 * 8 7 5 28 28 H 1.00901 * 111.00394 * 38.95388 * 13 2 1 29 29 H 1.09003 * 109.47192 * 60.00609 * 14 13 2 30 30 H 1.08998 * 109.47464 * 300.00130 * 14 13 2 31 31 H 0.96699 * 113.99829 * 303.15230 * 16 15 14 32 32 H 1.09005 * 110.30718 * 21.58080 * 17 15 14 33 33 H 1.08997 * 110.30992 * 259.41600 * 17 15 14 34 34 H 1.09002 * 109.91707 * 120.58029 * 18 17 15 35 35 H 1.09002 * 109.91668 * 241.67819 * 18 17 15 36 36 H 1.09003 * 109.47065 * 59.87544 * 20 19 18 37 37 H 1.08999 * 109.47271 * 179.87278 * 20 19 18 38 38 H 1.09003 * 109.47401 * 299.87547 * 20 19 18 39 39 H 1.08998 * 110.51915 * 280.54171 * 21 19 18 40 40 H 1.09009 * 110.83927 * 157.56590 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5418 -0.6149 -1.3128 6 1 4.0789 -0.0855 -0.5397 7 6 4.2303 -1.1936 -2.3579 8 7 5.5410 -1.1004 -2.4136 9 14 3.3014 -2.1099 -3.6947 10 1 2.9397 -1.1657 -4.7823 11 1 4.1603 -3.1904 -4.2426 12 1 2.0659 -2.7020 -3.1220 13 7 2.0197 -0.6925 1.1993 14 6 2.0826 0.2226 2.3468 15 6 2.5952 -0.5332 3.5744 16 8 3.9177 -1.0248 3.3474 17 6 2.5549 0.3694 4.8288 18 6 2.0877 -0.5509 5.9717 19 7 1.9035 -1.9019 5.3986 20 6 0.7866 -2.6013 6.0478 21 6 1.6368 -1.6912 3.9498 22 1 -0.3633 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 1.7515 -1.7715 -1.2056 26 1 1.6052 -0.2617 -2.1370 27 1 6.0254 -1.5078 -3.1487 28 1 1.4496 -1.4980 1.4100 29 1 1.0872 0.6163 2.5526 30 1 2.7589 1.0462 2.1181 31 1 3.9970 -1.5965 2.5716 32 1 1.8456 1.1846 4.6857 33 1 3.5481 0.7642 5.0429 34 1 2.8430 -0.5805 6.7570 35 1 1.1436 -0.1881 6.3782 36 1 -0.1313 -2.0310 5.9051 37 1 0.6717 -3.5911 5.6060 38 1 0.9906 -2.7007 7.1139 39 1 0.5990 -1.3985 3.7910 40 1 1.8741 -2.5880 3.3774 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702554354.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:02 Heat of formation + Delta-G solvation = -72.685343 kcal Electronic energy + Delta-G solvation = -18378.339869 eV Core-core repulsion = 15612.655259 eV Total energy + Delta-G solvation = -2765.684610 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.66797 -38.15915 -36.57834 -34.69104 -33.03347 -31.80249 -29.71386 -28.98780 -27.16155 -25.00467 -24.19273 -22.23581 -21.41518 -20.95831 -18.74142 -17.91607 -16.93396 -16.68935 -16.21974 -16.06126 -15.67056 -15.09066 -15.01449 -14.61238 -14.26668 -14.09743 -13.82296 -13.70747 -13.38815 -13.30970 -12.94847 -12.75800 -12.52327 -12.41656 -12.33473 -12.23350 -12.05114 -11.67205 -11.58279 -11.33981 -11.11776 -10.69811 -10.63843 -9.36560 -9.06381 -8.13695 -6.12667 1.39529 1.41843 1.52559 2.45247 3.00077 3.17577 3.29683 3.32647 3.63449 3.76847 4.05113 4.18921 4.20931 4.31856 4.41306 4.48176 4.51687 4.57143 4.63396 4.64694 4.77284 4.82022 4.91048 4.98260 4.99439 5.11950 5.15548 5.17217 5.21137 5.30118 5.54675 5.79189 5.84794 6.09243 6.28353 6.51447 6.69771 6.90656 6.96198 7.48135 9.03749 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031051 B = 0.005602 C = 0.005345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.537995 B = 4996.916867 C = 5237.429676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.103 3.897 3 H 0.053 0.947 4 C -0.003 4.003 5 C -0.487 4.487 6 H 0.033 0.967 7 C -0.005 4.005 8 N -0.960 5.960 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.292 1.292 12 H -0.247 1.247 13 N -0.681 5.681 14 C 0.050 3.950 15 C 0.132 3.868 16 O -0.565 6.565 17 C -0.121 4.121 18 C 0.041 3.959 19 N -0.538 5.538 20 C 0.016 3.984 21 C 0.018 3.982 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.019 0.981 26 H 0.017 0.983 27 H 0.259 0.741 28 H 0.339 0.661 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.386 0.614 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.063 0.937 36 H 0.036 0.964 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.735 0.299 14.924 20.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.007 4.007 3 H 0.071 0.929 4 C -0.041 4.041 5 C -0.526 4.526 6 H 0.051 0.949 7 C -0.200 4.200 8 N -0.603 5.603 9 Si 0.771 3.229 10 H -0.197 1.197 11 H -0.219 1.219 12 H -0.170 1.170 13 N -0.313 5.313 14 C -0.080 4.080 15 C 0.090 3.910 16 O -0.372 6.372 17 C -0.159 4.159 18 C -0.087 4.087 19 N -0.262 5.262 20 C -0.132 4.132 21 C -0.111 4.111 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.037 0.963 26 H 0.036 0.964 27 H 0.068 0.932 28 H 0.158 0.842 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.235 0.765 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.365 0.348 15.303 20.321 hybrid contribution -1.319 -0.124 -1.274 1.838 sum -14.685 0.224 14.029 20.310 Atomic orbital electron populations 1.22430 0.95822 1.02349 1.02374 1.21323 0.92437 0.96688 0.90221 0.92883 1.19578 0.94392 0.96114 0.93969 1.21300 0.92136 1.32212 1.06934 0.94870 1.25968 0.95468 0.97700 1.00855 1.70098 1.08554 1.48070 1.33558 0.85723 0.79269 0.78548 0.79337 1.19745 1.21878 1.17046 1.60228 1.58449 1.09568 1.03016 1.22499 0.99575 0.95604 0.90349 1.22090 0.82847 0.92711 0.93337 1.86391 1.28705 1.70016 1.52090 1.22488 1.03081 0.97767 0.92587 1.22858 1.01052 0.87713 0.97078 1.64709 1.40995 1.17854 1.02630 1.22574 0.91196 0.99141 1.00309 1.23845 0.98098 0.99097 0.90020 0.91858 0.91801 0.92020 0.96313 0.96440 0.93185 0.84200 0.93048 0.92536 0.76450 0.88390 0.90799 0.90373 0.91836 0.94541 0.91174 0.90406 0.91974 0.90241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.55 9.16 71.98 0.66 -3.89 16 2 C 0.10 3.72 2.53 44.92 0.11 3.83 16 3 H 0.05 2.08 7.80 -2.39 -0.02 2.06 16 4 C 0.00 -0.12 3.72 29.85 0.11 -0.01 16 5 C -0.49 -27.88 9.39 25.60 0.24 -27.64 16 6 H 0.03 2.14 7.99 -2.91 -0.02 2.11 16 7 C -0.01 -0.32 5.47 84.65 0.46 0.15 16 8 N -0.96 -61.80 13.96 21.45 0.30 -61.50 16 9 Si 0.95 44.95 27.47 68.60 1.88 46.84 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 12 H -0.25 -10.75 6.54 99.48 0.65 -10.10 16 13 N -0.68 -22.84 5.47 -491.59 -2.69 -25.52 16 14 C 0.05 1.44 4.64 86.30 0.40 1.84 16 15 C 0.13 3.65 1.14 -9.59 -0.01 3.64 16 16 O -0.56 -20.05 13.12 -148.98 -1.95 -22.00 16 17 C -0.12 -2.77 6.27 31.47 0.20 -2.57 16 18 C 0.04 0.83 6.69 86.44 0.58 1.41 16 19 N -0.54 -12.49 5.56 -908.37 -5.05 -17.54 16 20 C 0.02 0.28 9.41 127.69 1.20 1.48 16 21 C 0.02 0.42 4.78 86.59 0.41 0.83 16 22 H 0.06 1.42 7.45 -2.38 -0.02 1.40 16 23 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 24 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 25 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16 26 H 0.02 0.77 7.57 -2.39 -0.02 0.75 16 27 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 28 H 0.34 10.01 7.39 -89.69 -0.66 9.35 16 29 H 0.05 1.23 7.40 -2.39 -0.02 1.21 16 30 H 0.06 1.91 8.05 -2.39 -0.02 1.89 16 31 H 0.39 14.08 8.60 -74.06 -0.64 13.44 16 32 H 0.10 1.80 7.82 -2.38 -0.02 1.78 16 33 H 0.07 1.87 8.08 -2.39 -0.02 1.85 16 34 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 35 H 0.06 1.02 7.73 -2.39 -0.02 1.00 16 36 H 0.04 0.55 8.01 -2.39 -0.02 0.53 16 37 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.27 7.88 -2.39 -0.02 1.25 16 40 H 0.08 2.05 8.00 -2.38 -0.02 2.03 16 Total: -1.00 -68.77 315.54 -3.49 -72.26 By element: Atomic # 1 Polarization: 28.76 SS G_CDS: -0.35 Total: 28.42 kcal Atomic # 6 Polarization: -25.31 SS G_CDS: 4.37 Total: -20.95 kcal Atomic # 7 Polarization: -97.13 SS G_CDS: -7.44 Total: -104.57 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -1.95 Total: -22.00 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.88 Total: 46.84 kcal Total: -68.77 -3.49 -72.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702554354.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.422 kcal (2) G-P(sol) polarization free energy of solvation -68.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds