Wall clock time and date at job start Mon Mar 30 2020 04:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47298 * 2 1 4 4 C 1.53000 * 109.46988 * 120.00897 * 2 1 3 5 5 C 1.50700 * 109.46925 * 184.99852 * 4 2 1 6 6 H 1.08003 * 120.00144 * 359.97438 * 5 4 2 7 7 C 1.37881 * 120.00172 * 179.97438 * 5 4 2 8 8 N 1.31517 * 119.99748 * 0.02562 * 7 5 4 9 9 Si 1.86791 * 120.00068 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47389 * 60.00173 * 9 7 5 11 11 H 1.48509 * 109.47305 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47434 * 299.99852 * 9 7 5 13 13 N 1.46906 * 109.46876 * 240.00242 * 2 1 3 14 14 C 1.46904 * 110.99869 * 84.99948 * 13 2 1 15 15 C 1.52996 * 109.47016 * 179.97438 * 14 13 2 16 16 O 1.42905 * 110.34903 * 65.69336 * 15 14 13 17 17 C 1.54594 * 110.30938 * 187.83032 * 15 14 13 18 18 C 1.54933 * 102.91997 * 140.87634 * 17 15 14 19 19 N 1.48813 * 103.35205 * 322.69117 * 18 17 15 20 20 C 1.46897 * 111.18681 * 159.50572 * 19 18 17 21 21 C 1.47905 * 105.67450 * 38.97719 * 19 18 17 22 22 H 1.08998 * 109.47395 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.46991 * 299.99529 * 1 2 3 24 24 H 1.08999 * 109.47209 * 59.99162 * 1 2 3 25 25 H 1.09000 * 109.46797 * 304.99009 * 4 2 1 26 26 H 1.09002 * 109.47361 * 64.99475 * 4 2 1 27 27 H 0.96997 * 119.99874 * 180.02562 * 8 7 5 28 28 H 1.00904 * 110.99882 * 321.05013 * 13 2 1 29 29 H 1.08998 * 109.46790 * 60.00249 * 14 13 2 30 30 H 1.08994 * 109.46993 * 300.00175 * 14 13 2 31 31 H 0.96701 * 113.99857 * 299.30566 * 16 15 14 32 32 H 1.08999 * 110.72754 * 259.23534 * 17 15 14 33 33 H 1.08999 * 110.72080 * 22.51913 * 17 15 14 34 34 H 1.08998 * 110.66828 * 81.02294 * 18 17 15 35 35 H 1.09009 * 110.66924 * 203.98451 * 18 17 15 36 36 H 1.09008 * 109.47425 * 302.66529 * 20 19 18 37 37 H 1.08996 * 109.47160 * 62.66334 * 20 19 18 38 38 H 1.09000 * 109.47168 * 182.66361 * 20 19 18 39 39 H 1.09002 * 109.91668 * 215.45268 * 21 19 18 40 40 H 1.09002 * 109.91761 * 94.35443 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7215 1.2491 5 6 3.5419 -0.6151 1.3126 6 1 4.0790 -0.0863 0.5391 7 6 4.2304 -1.1930 2.3581 8 7 3.5764 -1.8374 3.2998 9 14 6.0921 -1.0618 2.4364 10 1 6.4855 0.3689 2.4951 11 1 6.5872 -1.7620 3.6489 12 1 6.6838 -1.6888 1.2272 13 7 2.0196 -0.6925 -1.1995 14 6 2.0824 0.2227 -2.3470 15 6 2.5961 -0.5327 -3.5743 16 8 1.6567 -1.5340 -3.9706 17 6 2.8563 0.4499 -4.7390 18 6 4.1571 -0.1024 -5.3741 19 7 4.9450 -0.5627 -4.1986 20 6 5.9706 -1.5366 -4.5953 21 6 3.9644 -1.1723 -3.2742 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5140 -0.8899 25 1 1.6055 -0.2619 2.1369 26 1 1.7515 -1.7717 1.2054 27 1 4.0607 -2.2437 4.0355 28 1 1.4494 -1.4979 -1.4102 29 1 2.7588 1.0462 -2.1182 30 1 1.0870 0.6164 -2.5525 31 1 1.4872 -2.2040 -3.2943 32 1 2.0358 0.4241 -5.4561 33 1 3.0099 1.4615 -4.3632 34 1 3.9364 -0.9388 -6.0373 35 1 4.6867 0.6840 -5.9121 36 1 5.4960 -2.3806 -5.0961 37 1 6.6786 -1.0623 -5.2748 38 1 6.4983 -1.8898 -3.7093 39 1 4.2509 -0.9694 -2.2423 40 1 3.9159 -2.2484 -3.4412 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702554355.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:55:06 Heat of formation + Delta-G solvation = -50.838092 kcal Electronic energy + Delta-G solvation = -18499.111794 eV Core-core repulsion = 15734.374552 eV Total energy + Delta-G solvation = -2764.737242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.62091 -36.72608 -35.51573 -32.72195 -31.68064 -30.33924 -27.98064 -27.21050 -25.95351 -23.63554 -22.70539 -21.18089 -20.14318 -19.70282 -17.01535 -16.21136 -15.71081 -15.18175 -14.84412 -14.43565 -14.33309 -14.06807 -13.66911 -13.21551 -12.93717 -12.77788 -12.33503 -11.93000 -11.78597 -11.53569 -11.52363 -11.39780 -11.35168 -11.16519 -11.02958 -10.71701 -10.52413 -10.30766 -10.05461 -9.87041 -9.22938 -8.97257 -8.33181 -8.23733 -7.63501 -5.86375 -3.84049 3.42688 3.46157 3.50307 4.02718 4.34945 4.50215 4.58430 4.73354 4.89237 5.09165 5.35696 5.43749 5.46447 5.50235 5.51483 5.66553 5.71432 5.81818 5.87868 5.90765 5.95947 5.98118 6.03645 6.05130 6.23741 6.44608 6.49840 6.61589 6.93845 7.01319 7.08122 7.51455 7.65892 7.72555 7.98539 8.02554 8.15430 8.61037 9.21309 9.77417 11.25674 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.019250 B = 0.007623 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.211211 B = 3672.082369 C = 4806.047691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 H 0.065 0.935 4 C 0.034 3.966 5 C -0.488 4.488 6 H 0.058 0.942 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.291 1.291 12 H -0.278 1.278 13 N -0.661 5.661 14 C 0.041 3.959 15 C 0.125 3.875 16 O -0.564 6.564 17 C -0.110 4.110 18 C 0.034 3.966 19 N -0.519 5.519 20 C 0.017 3.983 21 C 0.016 3.984 22 H 0.050 0.950 23 H 0.057 0.943 24 H 0.037 0.963 25 H 0.017 0.983 26 H 0.016 0.984 27 H 0.257 0.743 28 H 0.325 0.675 29 H 0.082 0.918 30 H 0.028 0.972 31 H 0.377 0.623 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.025 0.975 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.114 0.886 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 2.294 -15.418 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.019 4.019 3 H 0.083 0.917 4 C -0.004 4.004 5 C -0.527 4.527 6 H 0.076 0.924 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.718 3.282 10 H -0.205 1.205 11 H -0.217 1.217 12 H -0.204 1.204 13 N -0.292 5.292 14 C -0.089 4.089 15 C 0.084 3.916 16 O -0.370 6.370 17 C -0.148 4.148 18 C -0.094 4.094 19 N -0.244 5.244 20 C -0.132 4.132 21 C -0.112 4.112 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.034 0.966 27 H 0.067 0.933 28 H 0.142 0.858 29 H 0.100 0.900 30 H 0.046 0.954 31 H 0.226 0.774 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.958 3.055 -15.383 15.713 hybrid contribution -0.287 -1.011 0.072 1.054 sum -1.245 2.044 -15.311 15.497 Atomic orbital electron populations 1.22548 0.99463 1.01192 1.00670 1.21794 0.89901 0.98200 0.91989 0.91670 1.19106 0.96247 0.95315 0.89688 1.21110 0.91847 1.32910 1.06829 0.92356 1.25000 0.97937 0.95923 0.96043 1.69955 1.35275 1.36983 1.12358 0.86711 0.86463 0.78005 0.77066 1.20519 1.21717 1.20362 1.60613 1.57385 1.08535 1.02634 1.22588 0.99306 0.96414 0.90573 1.22095 0.87944 0.88117 0.93448 1.86479 1.64078 1.40993 1.45490 1.22483 0.97175 0.98458 0.96729 1.23280 0.93684 0.99334 0.93081 1.64876 1.12102 1.35429 1.11978 1.22497 0.95674 0.93951 1.01039 1.23657 0.90774 0.96799 0.99929 0.93058 0.92436 0.94406 0.96488 0.96563 0.93313 0.85795 0.89984 0.95423 0.77419 0.90252 0.89473 0.93829 0.90193 0.95675 0.91602 0.91052 0.86817 0.93454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.96 9.16 37.16 0.34 -2.62 16 2 C 0.09 1.77 2.53 -67.71 -0.17 1.60 16 3 H 0.07 1.32 7.80 -51.93 -0.40 0.92 16 4 C 0.03 0.85 4.65 -27.88 -0.13 0.72 16 5 C -0.49 -13.58 8.84 -34.44 -0.30 -13.89 16 6 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.90 -27.34 13.29 55.43 0.74 -26.60 16 9 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.66 -11.53 5.12 -106.72 -0.55 -12.07 16 14 C 0.04 0.63 4.51 -3.82 -0.02 0.61 16 15 C 0.13 1.75 1.15 -89.27 -0.10 1.65 16 16 O -0.56 -7.74 12.93 -35.23 -0.46 -8.19 16 17 C -0.11 -1.36 6.36 -24.87 -0.16 -1.51 16 18 C 0.03 0.41 6.58 -1.74 -0.01 0.40 16 19 N -0.52 -7.40 5.56 -238.46 -1.33 -8.72 16 20 C 0.02 0.21 9.41 60.06 0.57 0.78 16 21 C 0.02 0.25 5.89 -2.75 -0.02 0.23 16 22 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.55 7.45 -51.93 -0.39 0.17 16 25 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 28 H 0.32 5.18 7.17 -39.29 -0.28 4.90 16 29 H 0.08 1.33 7.94 -51.93 -0.41 0.91 16 30 H 0.03 0.41 7.44 -51.93 -0.39 0.02 16 31 H 0.38 4.41 7.78 45.56 0.35 4.76 16 32 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.09 1.02 7.79 -51.93 -0.40 0.62 16 34 H 0.04 0.52 7.97 -51.93 -0.41 0.11 16 35 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.02 0.29 8.01 -51.92 -0.42 -0.12 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.11 2.10 7.23 -51.93 -0.38 1.72 16 40 H 0.05 0.72 7.55 -51.93 -0.39 0.33 16 LS Contribution 317.53 15.07 4.79 4.79 Total: -1.00 -30.44 317.53 -8.37 -38.81 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.44 Total: 5.55 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -0.10 Total: -10.70 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -1.14 Total: -47.39 kcal Atomic # 8 Polarization: -7.74 SS G_CDS: -0.46 Total: -8.19 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -30.44 -8.37 -38.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702554355.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.029 kcal (2) G-P(sol) polarization free energy of solvation -30.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds