Wall clock time and date at job start Mon Mar 30 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46851 * 110.99909 * 170.79297 * 12 2 1 14 14 C 1.53037 * 109.52063 * 185.83785 * 13 12 2 15 15 C 1.53122 * 109.27991 * 300.81643 * 14 13 12 16 16 C 1.53127 * 109.15924 * 57.65818 * 15 14 13 17 17 H 1.08991 * 109.50215 * 62.28492 * 16 15 14 18 18 N 1.46901 * 109.53421 * 182.38876 * 16 15 14 19 19 C 1.46902 * 110.99443 * 274.82078 * 18 16 15 20 20 C 1.53003 * 109.46647 * 180.02562 * 19 18 16 21 21 O 1.42896 * 109.47208 * 64.99772 * 20 19 18 22 22 C 1.46849 * 110.99888 * 294.99694 * 12 2 1 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.45857 * 305.85335 * 13 12 2 28 28 H 1.08997 * 109.46306 * 65.82392 * 13 12 2 29 29 H 1.08997 * 109.50148 * 180.88010 * 14 13 12 30 30 H 1.08998 * 109.50474 * 60.75710 * 14 13 12 31 31 H 1.08997 * 109.52089 * 297.75287 * 15 14 13 32 32 H 1.08995 * 109.57547 * 177.58791 * 15 14 13 33 33 H 1.00897 * 111.00144 * 38.76993 * 18 16 15 34 34 H 1.09002 * 109.47031 * 300.00135 * 19 18 16 35 35 H 1.08996 * 109.47326 * 60.00284 * 19 18 16 36 36 H 1.09000 * 109.46559 * 184.99777 * 20 19 18 37 37 H 1.08997 * 109.47316 * 304.99787 * 20 19 18 38 38 H 0.96702 * 113.99716 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.46538 * 294.18057 * 22 12 2 40 40 H 1.09001 * 109.45908 * 54.15546 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 3.4710 -0.9051 1.1288 14 6 3.9221 -1.7533 2.3200 15 6 3.5556 -1.0335 3.6209 16 6 2.0455 -0.7811 3.6474 17 1 1.5171 -1.7343 3.6352 18 7 1.6926 -0.0401 4.8657 19 6 1.4914 -0.9542 5.9980 20 6 1.1256 -0.1476 7.2456 21 8 -0.1369 0.4914 7.0465 22 6 1.6488 0.0389 2.4176 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7096 1.1617 -3.4844 27 1 3.7176 -1.4214 0.2011 28 1 3.9807 0.0580 1.1550 29 1 5.0016 -1.8977 2.2758 30 1 3.4231 -2.7218 2.2870 31 1 4.0849 -0.0821 3.6723 32 1 3.8363 -1.6530 4.4726 33 1 2.3918 0.6546 5.0817 34 1 0.6843 -1.6488 5.7652 35 1 2.4094 -1.5123 6.1820 36 1 1.0633 -0.8157 8.1047 37 1 1.8903 0.6075 7.4273 38 1 -0.4326 1.0212 7.7995 39 1 2.1671 0.9975 2.4377 40 1 0.5720 0.2080 2.4260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708555426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:26 Heat of formation + Delta-G solvation = -48.158719 kcal Electronic energy + Delta-G solvation = -18289.542357 eV Core-core repulsion = 15524.921302 eV Total energy + Delta-G solvation = -2764.621055 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.82618 -37.18479 -35.39150 -33.42427 -31.70146 -30.12790 -28.36550 -26.98334 -24.99605 -23.47375 -22.07512 -21.45312 -19.93284 -19.08725 -17.62618 -16.25854 -15.84539 -15.41754 -14.93165 -14.24761 -13.96778 -13.86360 -13.71420 -13.25963 -12.86261 -12.64016 -12.53216 -12.25783 -11.97783 -11.51316 -11.11762 -10.94134 -10.80198 -10.61706 -10.53099 -10.31299 -10.21359 -10.11251 -10.00667 -9.77412 -9.52269 -8.71360 -8.37300 -8.15112 -7.06252 -5.96420 -4.01121 3.33446 3.39675 3.42288 4.12986 4.21212 4.46153 4.98858 5.05442 5.06138 5.19324 5.28821 5.34482 5.37973 5.50559 5.52737 5.75646 5.85987 5.97345 6.05329 6.23167 6.25708 6.31826 6.48996 6.59859 6.79069 6.83817 7.01113 7.18265 7.19672 7.31056 7.51710 7.60724 7.63598 7.84581 7.88694 8.29979 8.41044 8.70054 9.05853 9.63724 11.10371 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.039595 B = 0.005191 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.982536 B = 5393.138345 C = 5934.905654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.214 3.786 3 H -0.003 1.003 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.059 3.941 7 N -0.892 5.892 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.534 5.534 13 C 0.061 3.939 14 C -0.113 4.113 15 C -0.145 4.145 16 C 0.092 3.908 17 H 0.082 0.918 18 N -0.676 5.676 19 C 0.059 3.941 20 C 0.080 3.920 21 O -0.557 6.557 22 C 0.069 3.931 23 H 0.083 0.917 24 H 0.033 0.967 25 H 0.010 0.990 26 H 0.260 0.740 27 H 0.089 0.911 28 H 0.017 0.983 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.050 0.950 33 H 0.335 0.665 34 H 0.079 0.921 35 H 0.040 0.960 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.371 0.629 39 H 0.017 0.983 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.444 -2.186 16.889 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.108 3.892 3 H 0.015 0.985 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.142 4.142 7 N -0.531 5.531 8 Si 0.724 3.276 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.260 5.260 13 C -0.067 4.067 14 C -0.152 4.152 15 C -0.185 4.185 16 C -0.018 4.018 17 H 0.100 0.900 18 N -0.306 5.306 19 C -0.070 4.070 20 C 0.001 3.999 21 O -0.360 6.360 22 C -0.060 4.060 23 H 0.102 0.898 24 H 0.052 0.948 25 H 0.028 0.972 26 H 0.070 0.930 27 H 0.107 0.893 28 H 0.035 0.965 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.153 0.847 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.059 0.941 38 H 0.217 0.783 39 H 0.035 0.965 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.498 -2.791 16.020 16.452 hybrid contribution 1.661 0.416 -0.078 1.714 sum 4.159 -2.375 15.941 16.645 Atomic orbital electron populations 1.21800 0.97616 0.99579 0.99863 1.19197 0.92427 0.91911 0.85629 0.98545 1.21215 1.31068 1.12262 0.89900 0.91787 1.24936 0.95227 0.95060 0.98982 1.69905 1.36917 1.22971 1.23324 0.86541 0.79172 0.79310 0.82615 1.20678 1.21375 1.19989 1.61978 1.11682 1.49737 1.02566 1.21989 0.89131 0.97513 0.98061 1.21573 0.99498 0.99705 0.94392 1.22286 0.97744 1.00243 0.98191 1.21633 0.93176 0.97376 0.89595 0.90021 1.60411 1.51557 1.15677 1.02964 1.21990 0.99915 0.94896 0.90245 1.22184 0.85834 0.95225 0.96618 1.86672 1.36785 1.68442 1.44147 1.21918 1.01195 0.93708 0.89173 0.89841 0.94785 0.97153 0.93030 0.89322 0.96521 0.92604 0.91575 0.92581 0.93143 0.84746 0.90232 0.94163 0.93667 0.94063 0.78313 0.96453 0.90361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.88 37.16 0.33 -3.00 16 2 C 0.21 5.59 2.07 -68.86 -0.14 5.44 16 3 H 0.00 -0.09 8.13 -51.93 -0.42 -0.51 16 4 C -0.51 -14.00 7.87 -34.44 -0.27 -14.27 16 5 H 0.06 1.75 6.04 -52.49 -0.32 1.43 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.84 11.32 55.43 0.63 -25.22 16 8 Si 0.90 21.49 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.53 -11.86 4.52 -228.07 -1.03 -12.89 16 13 C 0.06 1.24 5.15 -3.83 -0.02 1.22 16 14 C -0.11 -1.80 6.09 -26.65 -0.16 -1.96 16 15 C -0.15 -2.07 5.26 -26.60 -0.14 -2.21 16 16 C 0.09 1.46 2.63 -67.63 -0.18 1.28 16 17 H 0.08 1.38 7.80 -51.93 -0.41 0.97 16 18 N -0.68 -9.46 6.20 -106.63 -0.66 -10.12 16 19 C 0.06 0.68 5.87 -3.82 -0.02 0.66 16 20 C 0.08 0.76 7.33 37.16 0.27 1.03 16 21 O -0.56 -6.34 13.61 -35.23 -0.48 -6.82 16 22 C 0.07 1.36 4.89 -3.83 -0.02 1.34 16 23 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.01 0.23 6.40 -51.93 -0.33 -0.10 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.09 1.93 5.74 -51.93 -0.30 1.64 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.05 0.63 7.53 -51.93 -0.39 0.23 16 33 H 0.33 4.29 8.45 -39.29 -0.33 3.96 16 34 H 0.08 1.01 8.06 -51.93 -0.42 0.60 16 35 H 0.04 0.41 7.50 -51.93 -0.39 0.02 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.37 2.38 9.12 45.56 0.42 2.80 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 1.65 6.18 -51.93 -0.32 1.33 16 LS Contribution 308.27 15.07 4.65 4.65 Total: -1.00 -30.60 308.27 -8.41 -39.01 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.04 Total: 3.84 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: -0.45 Total: -8.92 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: -1.06 Total: -48.23 kcal Atomic # 8 Polarization: -6.34 SS G_CDS: -0.48 Total: -6.82 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.60 -8.41 -39.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708555426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.147 kcal (2) G-P(sol) polarization free energy of solvation -30.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds