Wall clock time and date at job start Mon Mar 30 2020 05:23:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47094 * 90.00289 * 8 6 4 10 10 H 1.48505 * 109.47195 * 210.00171 * 8 6 4 11 11 H 1.48493 * 109.47449 * 330.00136 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 C 1.46851 * 110.99909 * 170.79297 * 12 2 1 14 14 C 1.53037 * 109.52063 * 185.83785 * 13 12 2 15 15 C 1.53122 * 109.27991 * 300.81643 * 14 13 12 16 16 C 1.53127 * 109.15924 * 57.65818 * 15 14 13 17 17 H 1.08991 * 109.50215 * 62.28492 * 16 15 14 18 18 N 1.46901 * 109.53421 * 182.38876 * 16 15 14 19 19 C 1.46902 * 110.99443 * 274.82078 * 18 16 15 20 20 C 1.53003 * 109.46647 * 180.02562 * 19 18 16 21 21 O 1.42896 * 109.47208 * 64.99772 * 20 19 18 22 22 C 1.46849 * 110.99888 * 294.99694 * 12 2 1 23 23 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 24 24 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 26 26 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 27 27 H 1.08997 * 109.45857 * 305.85335 * 13 12 2 28 28 H 1.08997 * 109.46306 * 65.82392 * 13 12 2 29 29 H 1.08997 * 109.50148 * 180.88010 * 14 13 12 30 30 H 1.08998 * 109.50474 * 60.75710 * 14 13 12 31 31 H 1.08997 * 109.52089 * 297.75287 * 15 14 13 32 32 H 1.08995 * 109.57547 * 177.58791 * 15 14 13 33 33 H 1.00897 * 111.00144 * 38.76993 * 18 16 15 34 34 H 1.09002 * 109.47031 * 300.00135 * 19 18 16 35 35 H 1.08996 * 109.47326 * 60.00284 * 19 18 16 36 36 H 1.09000 * 109.46559 * 184.99777 * 20 19 18 37 37 H 1.08997 * 109.47316 * 304.99787 * 20 19 18 38 38 H 0.96702 * 113.99716 * 179.97438 * 21 20 19 39 39 H 1.08999 * 109.46538 * 294.18057 * 22 12 2 40 40 H 1.09001 * 109.45908 * 54.15546 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1617 -4.4118 10 1 2.4868 -0.1414 -5.1123 11 1 3.6294 -1.7584 -3.7121 12 7 2.0196 -0.6925 1.1994 13 6 3.4710 -0.9051 1.1288 14 6 3.9221 -1.7533 2.3200 15 6 3.5556 -1.0335 3.6209 16 6 2.0455 -0.7811 3.6474 17 1 1.5171 -1.7343 3.6352 18 7 1.6926 -0.0401 4.8657 19 6 1.4914 -0.9542 5.9980 20 6 1.1256 -0.1476 7.2456 21 8 -0.1369 0.4914 7.0465 22 6 1.6488 0.0389 2.4176 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7096 1.1617 -3.4844 27 1 3.7176 -1.4214 0.2011 28 1 3.9807 0.0580 1.1550 29 1 5.0016 -1.8977 2.2758 30 1 3.4231 -2.7218 2.2870 31 1 4.0849 -0.0821 3.6723 32 1 3.8363 -1.6530 4.4726 33 1 2.3918 0.6546 5.0817 34 1 0.6843 -1.6488 5.7652 35 1 2.4094 -1.5123 6.1820 36 1 1.0633 -0.8157 8.1047 37 1 1.8903 0.6075 7.4273 38 1 -0.4326 1.0212 7.7995 39 1 2.1671 0.9975 2.4377 40 1 0.5720 0.2080 2.4260 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708555426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:25 Heat of formation + Delta-G solvation = -73.103816 kcal Electronic energy + Delta-G solvation = -18290.624058 eV Core-core repulsion = 15524.921302 eV Total energy + Delta-G solvation = -2765.702756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.27729 -38.17467 -36.76791 -35.05890 -33.46867 -31.36071 -30.24202 -28.25076 -26.94615 -25.06982 -23.13742 -22.73037 -21.72485 -20.63819 -18.39544 -18.32864 -17.44879 -16.42772 -16.36800 -15.91122 -15.44974 -15.25936 -14.91255 -14.59808 -14.41773 -14.23704 -13.75806 -13.55625 -13.44870 -13.23752 -12.87490 -12.55826 -12.37138 -12.24189 -12.16250 -12.07112 -11.83064 -11.64300 -11.57140 -11.10034 -10.83673 -10.72879 -10.49803 -9.24014 -8.90732 -8.10874 -6.23429 1.42616 1.43845 1.53819 2.42299 2.98975 3.17997 3.50710 3.61421 3.90247 3.98334 4.13464 4.29440 4.32093 4.42114 4.50164 4.65450 4.66800 4.73582 4.78896 4.81196 4.87584 4.99156 5.01092 5.02711 5.09130 5.12215 5.24243 5.31175 5.42019 5.53760 5.73136 5.79270 6.11951 6.24401 6.42777 6.53302 6.78439 6.92777 7.05215 7.45920 8.95733 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.039595 B = 0.005191 C = 0.004717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.982536 B = 5393.138345 C = 5934.905654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.217 3.783 3 H -0.043 1.043 4 C -0.521 4.521 5 H 0.065 0.935 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.963 3.037 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.266 1.266 12 N -0.538 5.538 13 C 0.060 3.940 14 C -0.104 4.104 15 C -0.136 4.136 16 C 0.105 3.895 17 H 0.073 0.927 18 N -0.689 5.689 19 C 0.056 3.944 20 C 0.080 3.920 21 O -0.589 6.589 22 C 0.072 3.928 23 H 0.060 0.940 24 H 0.030 0.970 25 H 0.023 0.977 26 H 0.261 0.739 27 H 0.068 0.932 28 H 0.005 0.995 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.343 0.657 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.070 0.930 37 H 0.055 0.945 38 H 0.390 0.610 39 H 0.006 0.994 40 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.753 -3.454 18.509 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.110 3.890 3 H -0.026 1.026 4 C -0.559 4.559 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.190 1.190 12 N -0.263 5.263 13 C -0.068 4.068 14 C -0.143 4.143 15 C -0.175 4.175 16 C -0.006 4.006 17 H 0.091 0.909 18 N -0.320 5.320 19 C -0.073 4.073 20 C 0.002 3.998 21 O -0.396 6.396 22 C -0.057 4.057 23 H 0.078 0.922 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.023 0.977 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.239 0.761 39 H 0.024 0.976 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.813 -4.060 17.684 18.540 hybrid contribution 1.221 0.865 -0.529 1.588 sum 5.034 -3.195 17.155 18.161 Atomic orbital electron populations 1.21613 0.97531 0.99082 0.99344 1.19009 0.92533 0.90013 0.87409 1.02595 1.21486 1.31250 1.12393 0.90820 0.91731 1.25775 0.95318 0.95736 1.02078 1.70043 1.37826 1.24262 1.24055 0.85478 0.78921 0.78156 0.78607 1.20117 1.21003 1.19017 1.61951 1.13174 1.49131 1.02039 1.22027 0.87675 0.97551 0.99538 1.21513 1.01006 0.98720 0.93046 1.22215 0.96095 1.00876 0.98328 1.21360 0.94435 0.96059 0.88697 0.90851 1.60291 1.52038 1.16449 1.03197 1.22094 1.00405 0.94715 0.90045 1.22260 0.85498 0.95822 0.96222 1.86609 1.37802 1.69170 1.46029 1.21927 0.99776 0.93936 0.90068 0.92158 0.95037 0.95820 0.92950 0.91413 0.97676 0.89980 0.91523 0.92169 0.89876 0.83855 0.91888 0.91916 0.91152 0.92681 0.76087 0.97560 0.92415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.22 8.88 71.98 0.64 -5.58 16 2 C 0.22 11.77 2.07 44.17 0.09 11.86 16 3 H -0.04 -2.64 8.13 -2.39 -0.02 -2.66 16 4 C -0.52 -29.49 7.87 25.60 0.20 -29.29 16 5 H 0.06 3.58 6.04 -2.91 -0.02 3.56 16 6 C 0.01 0.53 5.30 84.66 0.45 0.98 16 7 N -0.92 -54.75 11.32 21.45 0.24 -54.51 16 8 Si 0.96 44.36 29.54 68.60 2.03 46.39 16 9 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 12 N -0.54 -24.33 4.52 -875.48 -3.95 -28.29 16 13 C 0.06 2.43 5.15 86.32 0.44 2.87 16 14 C -0.10 -3.08 6.09 30.65 0.19 -2.89 16 15 C -0.14 -3.47 5.26 30.68 0.16 -3.31 16 16 C 0.10 3.18 2.63 44.97 0.12 3.30 16 17 H 0.07 2.37 7.80 -2.39 -0.02 2.35 16 18 N -0.69 -18.05 6.20 -491.28 -3.05 -21.10 16 19 C 0.06 1.15 5.87 86.30 0.51 1.66 16 20 C 0.08 1.29 7.33 71.98 0.53 1.81 16 21 O -0.59 -12.36 13.61 -148.98 -2.03 -14.39 16 22 C 0.07 2.86 4.89 86.33 0.42 3.29 16 23 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 24 H 0.03 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.02 1.13 6.40 -2.39 -0.02 1.12 16 26 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 27 H 0.07 2.99 5.74 -2.39 -0.01 2.97 16 28 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.06 1.52 8.10 -2.39 -0.02 1.50 16 32 H 0.08 1.66 7.53 -2.39 -0.02 1.64 16 33 H 0.34 8.03 8.45 -89.70 -0.76 7.27 16 34 H 0.06 1.50 8.06 -2.39 -0.02 1.48 16 35 H 0.06 1.01 7.50 -2.39 -0.02 0.99 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.39 4.31 9.12 -74.06 -0.68 3.63 16 39 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 40 H 0.06 2.50 6.18 -2.39 -0.01 2.49 16 Total: -1.00 -67.45 308.27 -3.42 -70.87 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -0.41 Total: 16.33 kcal Atomic # 6 Polarization: -19.05 SS G_CDS: 3.75 Total: -15.30 kcal Atomic # 7 Polarization: -97.14 SS G_CDS: -6.76 Total: -103.89 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -2.03 Total: -14.39 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -67.45 -3.42 -70.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708555426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.236 kcal (2) G-P(sol) polarization free energy of solvation -67.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds