Wall clock time and date at job start Mon Mar 30 2020 05:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47048 * 2 1 4 4 C 1.50693 * 109.47291 * 239.99534 * 2 1 3 5 5 H 1.07997 * 119.99765 * 240.00340 * 4 2 1 6 6 C 1.37875 * 120.00258 * 59.99651 * 4 2 1 7 7 N 1.31520 * 119.99690 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00119 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47447 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47174 * 120.00514 * 8 6 4 11 11 H 1.48508 * 109.46910 * 240.00093 * 8 6 4 12 12 N 1.46899 * 109.47000 * 119.98951 * 2 1 3 13 13 C 1.46846 * 110.99745 * 59.21317 * 12 2 1 14 14 C 1.53042 * 109.52644 * 174.15831 * 13 12 2 15 15 C 1.53120 * 109.27756 * 59.17652 * 14 13 12 16 16 C 1.53123 * 109.15994 * 302.34703 * 15 14 13 17 17 H 1.08995 * 109.53486 * 297.69453 * 16 15 14 18 18 N 1.46902 * 109.50191 * 177.59159 * 16 15 14 19 19 C 1.46906 * 110.99573 * 85.19953 * 18 16 15 20 20 C 1.52998 * 109.47020 * 179.97438 * 19 18 16 21 21 O 1.42906 * 109.47024 * 64.99964 * 20 19 18 22 22 C 1.46845 * 111.00796 * 295.00195 * 12 2 1 23 23 H 1.08997 * 109.47344 * 60.00352 * 1 2 3 24 24 H 1.08996 * 109.47174 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47171 * 300.00534 * 1 2 3 26 26 H 0.97000 * 119.99711 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46354 * 294.17184 * 13 12 2 28 28 H 1.09001 * 109.46274 * 54.15399 * 13 12 2 29 29 H 1.09000 * 109.50690 * 179.12163 * 14 13 12 30 30 H 1.08997 * 109.49923 * 299.23769 * 14 13 12 31 31 H 1.09000 * 109.52319 * 182.44431 * 15 14 13 32 32 H 1.08998 * 109.52044 * 62.25101 * 15 14 13 33 33 H 1.00896 * 111.00219 * 209.15592 * 18 16 15 34 34 H 1.09002 * 109.46991 * 299.99841 * 19 18 16 35 35 H 1.09000 * 109.47202 * 60.00133 * 19 18 16 36 36 H 1.08999 * 109.47322 * 185.00065 * 20 19 18 37 37 H 1.09001 * 109.47293 * 305.00104 * 20 19 18 38 38 H 0.96705 * 113.99748 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.46012 * 65.81693 * 22 12 2 40 40 H 1.09003 * 109.46192 * 305.85738 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6992 -0.2396 -2.4826 7 7 0.9435 0.8299 -2.6034 8 14 2.3214 -1.1207 -4.0077 9 1 3.1465 -2.2872 -3.6035 10 1 1.1661 -1.5871 -4.8158 11 1 3.1466 -0.1877 -4.8164 12 7 2.0196 -0.6923 1.1996 13 6 1.5334 -2.0772 1.2431 14 6 2.1776 -2.8086 2.4231 15 6 1.8222 -2.0820 3.7232 16 6 2.2965 -0.6289 3.6326 17 1 3.3810 -0.6055 3.5258 18 7 1.9082 0.0907 4.8531 19 6 2.9056 -0.0976 5.9150 20 6 2.4679 0.6653 7.1669 21 8 1.2612 0.0933 7.6758 22 6 1.6488 0.0392 2.4177 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7088 1.1610 -3.4845 27 1 0.4500 -2.0782 1.3630 28 1 1.7966 -2.5839 0.3146 29 1 1.8046 -3.8320 2.4644 30 1 3.2602 -2.8201 2.2968 31 1 2.3144 -2.5743 4.5619 32 1 0.7422 -2.1042 3.8693 33 1 1.7620 1.0709 4.6639 34 1 2.9926 -1.1589 6.1478 35 1 3.8707 0.2808 5.5783 36 1 3.2489 0.5993 7.9243 37 1 2.2953 1.7113 6.9132 38 1 0.9250 0.5279 8.4715 39 1 0.5649 0.0283 2.5320 40 1 1.9955 1.0698 2.3422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708555427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:30 Heat of formation + Delta-G solvation = -49.650669 kcal Electronic energy + Delta-G solvation = -18326.826170 eV Core-core repulsion = 15562.140419 eV Total energy + Delta-G solvation = -2764.685751 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -38.85410 -37.23399 -35.41618 -33.41372 -31.72951 -30.14820 -28.16683 -26.80947 -25.19847 -23.59667 -22.02898 -21.77802 -20.03852 -18.63875 -17.63519 -16.24999 -15.72327 -15.23789 -15.03715 -14.36058 -14.12198 -13.88787 -13.56703 -13.40718 -12.99864 -12.72342 -12.49763 -12.03504 -11.79073 -11.60746 -11.06276 -11.02292 -10.83489 -10.69561 -10.50245 -10.35428 -10.19877 -10.13887 -10.05746 -9.79541 -9.46007 -8.81572 -8.36677 -8.22520 -7.08043 -5.99015 -4.02528 3.31253 3.39115 3.43705 4.12123 4.21069 4.44968 4.99870 5.06280 5.10702 5.21159 5.32937 5.41107 5.45234 5.57435 5.63215 5.78874 5.80767 5.98061 6.10172 6.27966 6.39766 6.44391 6.47276 6.48595 6.73693 6.85498 6.92007 6.93454 7.18322 7.22017 7.48470 7.57251 7.59686 7.76803 7.87202 8.17250 8.43292 8.64650 9.03987 9.62527 11.08204 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045120 B = 0.004954 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.420643 B = 5650.156104 C = 5906.186306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.212 3.788 3 H 0.038 0.962 4 C -0.498 4.498 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.530 5.530 13 C 0.062 3.938 14 C -0.119 4.119 15 C -0.101 4.101 16 C 0.091 3.909 17 H 0.048 0.952 18 N -0.679 5.679 19 C 0.059 3.941 20 C 0.080 3.920 21 O -0.558 6.558 22 C 0.056 3.944 23 H 0.087 0.913 24 H 0.029 0.971 25 H 0.008 0.992 26 H 0.259 0.741 27 H 0.025 0.975 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.337 0.663 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.371 0.629 39 H 0.035 0.965 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.411 -1.113 16.022 16.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.105 3.895 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.254 5.254 13 C -0.067 4.067 14 C -0.157 4.157 15 C -0.139 4.139 16 C -0.019 4.019 17 H 0.066 0.934 18 N -0.310 5.310 19 C -0.071 4.071 20 C 0.001 3.999 21 O -0.362 6.362 22 C -0.073 4.073 23 H 0.106 0.894 24 H 0.048 0.952 25 H 0.027 0.973 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.101 0.899 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.217 0.783 39 H 0.053 0.947 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.537 -1.912 15.554 15.875 hybrid contribution 0.053 0.683 -0.662 0.953 sum 2.590 -1.230 14.892 15.165 Atomic orbital electron populations 1.22389 1.00838 0.99348 1.00479 1.19285 0.89779 0.94451 0.85940 0.94451 1.21163 1.30425 1.12418 0.89674 0.91866 1.24931 0.95260 0.95139 0.98998 1.69905 1.37165 1.23112 1.23225 0.86477 0.78519 0.79672 0.82959 1.19743 1.21192 1.21109 1.62214 1.59748 1.01598 1.01853 1.21962 0.96180 0.90470 0.98046 1.21657 1.01227 0.98018 0.94826 1.21507 1.01210 0.94344 0.96847 1.21562 0.97856 0.94315 0.88158 0.93448 1.60431 1.46393 1.16188 1.08021 1.22012 0.92866 1.01430 0.90766 1.22196 0.86638 0.96051 0.94984 1.86651 1.41857 1.60384 1.47320 1.22063 0.97855 0.97054 0.90335 0.89449 0.95169 0.97308 0.93111 0.95734 0.89894 0.92373 0.91859 0.93115 0.91938 0.84465 0.90393 0.94009 0.93647 0.93888 0.78331 0.94708 0.92153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.23 8.28 37.16 0.31 -3.92 16 2 C 0.21 5.37 2.35 -68.87 -0.16 5.21 16 3 H 0.04 1.04 8.08 -51.93 -0.42 0.62 16 4 C -0.50 -13.65 7.86 -34.44 -0.27 -13.92 16 5 H 0.06 1.74 6.76 -52.49 -0.35 1.38 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.58 11.32 55.43 0.63 -24.96 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.53 -11.53 4.63 -228.08 -1.06 -12.58 16 13 C 0.06 1.24 4.66 -3.83 -0.02 1.22 16 14 C -0.12 -1.96 6.09 -26.65 -0.16 -2.12 16 15 C -0.10 -1.59 5.49 -26.61 -0.15 -1.74 16 16 C 0.09 1.45 2.66 -67.63 -0.18 1.27 16 17 H 0.05 0.78 7.80 -51.93 -0.41 0.38 16 18 N -0.68 -9.51 6.26 -106.64 -0.67 -10.18 16 19 C 0.06 0.69 5.87 -3.82 -0.02 0.66 16 20 C 0.08 0.76 7.33 37.16 0.27 1.03 16 21 O -0.56 -6.14 13.61 -35.23 -0.48 -6.62 16 22 C 0.06 1.06 4.29 -3.84 -0.02 1.04 16 23 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 24 H 0.03 0.72 6.52 -51.93 -0.34 0.38 16 25 H 0.01 0.18 6.65 -51.93 -0.35 -0.16 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 27 H 0.02 0.51 6.62 -51.93 -0.34 0.16 16 28 H 0.08 1.80 6.35 -51.93 -0.33 1.47 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.34 4.47 8.36 -39.29 -0.33 4.14 16 34 H 0.08 0.97 7.50 -51.93 -0.39 0.58 16 35 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.37 2.27 9.12 45.56 0.42 2.68 16 39 H 0.03 0.69 6.73 -51.93 -0.35 0.34 16 40 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 LS Contribution 306.09 15.07 4.61 4.61 Total: -1.00 -30.07 306.09 -8.46 -38.53 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.98 Total: 4.60 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: -0.49 Total: -9.77 kcal Atomic # 7 Polarization: -46.62 SS G_CDS: -1.10 Total: -47.72 kcal Atomic # 8 Polarization: -6.14 SS G_CDS: -0.48 Total: -6.62 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.07 -8.46 -38.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708555427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.125 kcal (2) G-P(sol) polarization free energy of solvation -30.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds