Wall clock time and date at job start Mon Mar 30 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47048 * 2 1 4 4 C 1.50693 * 109.47291 * 239.99534 * 2 1 3 5 5 H 1.07997 * 119.99765 * 240.00340 * 4 2 1 6 6 C 1.37875 * 120.00258 * 59.99651 * 4 2 1 7 7 N 1.31520 * 119.99690 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00119 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47447 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47174 * 120.00514 * 8 6 4 11 11 H 1.48508 * 109.46910 * 240.00093 * 8 6 4 12 12 N 1.46899 * 109.47000 * 119.98951 * 2 1 3 13 13 C 1.46846 * 110.99745 * 59.21317 * 12 2 1 14 14 C 1.53042 * 109.52644 * 174.15831 * 13 12 2 15 15 C 1.53120 * 109.27756 * 59.17652 * 14 13 12 16 16 C 1.53123 * 109.15994 * 302.34703 * 15 14 13 17 17 H 1.08995 * 109.53486 * 297.69453 * 16 15 14 18 18 N 1.46902 * 109.50191 * 177.59159 * 16 15 14 19 19 C 1.46906 * 110.99573 * 85.19953 * 18 16 15 20 20 C 1.52998 * 109.47020 * 179.97438 * 19 18 16 21 21 O 1.42906 * 109.47024 * 64.99964 * 20 19 18 22 22 C 1.46845 * 111.00796 * 295.00195 * 12 2 1 23 23 H 1.08997 * 109.47344 * 60.00352 * 1 2 3 24 24 H 1.08996 * 109.47174 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47171 * 300.00534 * 1 2 3 26 26 H 0.97000 * 119.99711 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46354 * 294.17184 * 13 12 2 28 28 H 1.09001 * 109.46274 * 54.15399 * 13 12 2 29 29 H 1.09000 * 109.50690 * 179.12163 * 14 13 12 30 30 H 1.08997 * 109.49923 * 299.23769 * 14 13 12 31 31 H 1.09000 * 109.52319 * 182.44431 * 15 14 13 32 32 H 1.08998 * 109.52044 * 62.25101 * 15 14 13 33 33 H 1.00896 * 111.00219 * 209.15592 * 18 16 15 34 34 H 1.09002 * 109.46991 * 299.99841 * 19 18 16 35 35 H 1.09000 * 109.47202 * 60.00133 * 19 18 16 36 36 H 1.08999 * 109.47322 * 185.00065 * 20 19 18 37 37 H 1.09001 * 109.47293 * 305.00104 * 20 19 18 38 38 H 0.96705 * 113.99748 * 179.97438 * 21 20 19 39 39 H 1.08998 * 109.46012 * 65.81693 * 22 12 2 40 40 H 1.09003 * 109.46192 * 305.85738 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.6532 -1.5886 -1.1311 6 6 1.6992 -0.2396 -2.4826 7 7 0.9435 0.8299 -2.6034 8 14 2.3214 -1.1207 -4.0077 9 1 3.1465 -2.2872 -3.6035 10 1 1.1661 -1.5871 -4.8158 11 1 3.1466 -0.1877 -4.8164 12 7 2.0196 -0.6923 1.1996 13 6 1.5334 -2.0772 1.2431 14 6 2.1776 -2.8086 2.4231 15 6 1.8222 -2.0820 3.7232 16 6 2.2965 -0.6289 3.6326 17 1 3.3810 -0.6055 3.5258 18 7 1.9082 0.0907 4.8531 19 6 2.9056 -0.0976 5.9150 20 6 2.4679 0.6653 7.1669 21 8 1.2612 0.0933 7.6758 22 6 1.6488 0.0392 2.4177 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 0.7088 1.1610 -3.4845 27 1 0.4500 -2.0782 1.3630 28 1 1.7966 -2.5839 0.3146 29 1 1.8046 -3.8320 2.4644 30 1 3.2602 -2.8201 2.2968 31 1 2.3144 -2.5743 4.5619 32 1 0.7422 -2.1042 3.8693 33 1 1.7620 1.0709 4.6639 34 1 2.9926 -1.1589 6.1478 35 1 3.8707 0.2808 5.5783 36 1 3.2489 0.5993 7.9243 37 1 2.2953 1.7113 6.9132 38 1 0.9250 0.5279 8.4715 39 1 0.5649 0.0283 2.5320 40 1 1.9955 1.0698 2.3422 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708555427.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:29 Heat of formation + Delta-G solvation = -73.883532 kcal Electronic energy + Delta-G solvation = -18327.876986 eV Core-core repulsion = 15562.140419 eV Total energy + Delta-G solvation = -2765.736567 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.34849 -38.20332 -36.74908 -35.03059 -33.49400 -31.39196 -29.95841 -28.00845 -27.25499 -25.19482 -23.44293 -22.81669 -21.67302 -20.21740 -18.39099 -18.20634 -17.27658 -16.49525 -16.29997 -16.02549 -15.57147 -15.32265 -14.92664 -14.81884 -14.44258 -14.07579 -13.72212 -13.55184 -13.38087 -13.20363 -12.90287 -12.66182 -12.54308 -12.27909 -12.17519 -11.98136 -11.82629 -11.60819 -11.39427 -11.09278 -10.88436 -10.75458 -10.49369 -9.32917 -8.85677 -8.10776 -6.21574 1.41861 1.43675 1.55596 2.43044 2.98902 3.18654 3.49265 3.60429 3.87427 4.01820 4.21565 4.29421 4.35273 4.37845 4.49427 4.61969 4.66425 4.71051 4.77338 4.81140 4.86165 4.89217 5.01202 5.06332 5.10118 5.14610 5.18898 5.28619 5.48024 5.54707 5.71156 5.79412 6.08769 6.21287 6.45502 6.49963 6.76764 6.92455 7.04010 7.47740 8.95920 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.045120 B = 0.004954 C = 0.004740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.420643 B = 5650.156104 C = 5906.186306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.215 3.785 3 H 0.005 0.995 4 C -0.513 4.513 5 H 0.058 0.942 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.960 3.040 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.281 1.281 12 N -0.537 5.537 13 C 0.063 3.937 14 C -0.109 4.109 15 C -0.095 4.095 16 C 0.102 3.898 17 H 0.045 0.955 18 N -0.684 5.684 19 C 0.055 3.945 20 C 0.081 3.919 21 O -0.586 6.586 22 C 0.060 3.940 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.022 0.978 26 H 0.261 0.739 27 H 0.016 0.984 28 H 0.062 0.938 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.053 0.947 33 H 0.341 0.659 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.391 0.609 39 H 0.024 0.976 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.155 -1.939 17.318 17.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.023 0.977 4 C -0.551 4.551 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.207 1.207 12 N -0.261 5.261 13 C -0.065 4.065 14 C -0.147 4.147 15 C -0.133 4.133 16 C -0.008 4.008 17 H 0.063 0.937 18 N -0.316 5.316 19 C -0.075 4.075 20 C 0.003 3.997 21 O -0.393 6.393 22 C -0.069 4.069 23 H 0.080 0.920 24 H 0.048 0.952 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.071 0.929 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.239 0.761 39 H 0.042 0.958 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.283 -2.736 16.888 17.421 hybrid contribution -0.192 0.979 -1.001 1.414 sum 3.090 -1.757 15.887 16.280 Atomic orbital electron populations 1.22180 1.00510 0.98985 0.99818 1.19051 0.89887 0.92924 0.87323 0.97713 1.21398 1.30521 1.12409 0.90798 0.92368 1.25707 0.95394 0.95807 1.01883 1.70029 1.37980 1.24263 1.23928 0.85469 0.78045 0.78654 0.79234 1.19120 1.20716 1.20721 1.62130 1.59818 1.02417 1.01726 1.21961 0.95945 0.89645 0.98924 1.21592 1.00988 0.98768 0.93395 1.21456 1.00750 0.94136 0.96971 1.21374 0.97204 0.94493 0.87714 0.93705 1.60446 1.47429 1.16334 1.07425 1.22129 0.92877 1.01530 0.90920 1.22218 0.86971 0.95889 0.94573 1.86582 1.42557 1.61409 1.48741 1.22077 0.97403 0.97017 0.90395 0.91990 0.95219 0.95934 0.93004 0.96613 0.91933 0.90056 0.91679 0.91160 0.92858 0.84090 0.91098 0.92882 0.91188 0.93008 0.76061 0.95811 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.85 8.28 71.98 0.60 -7.25 16 2 C 0.22 11.21 2.35 44.17 0.10 11.32 16 3 H 0.00 0.29 8.08 -2.38 -0.02 0.27 16 4 C -0.51 -28.55 7.86 25.60 0.20 -28.35 16 5 H 0.06 3.23 6.76 -2.91 -0.02 3.21 16 6 C 0.01 0.58 5.30 84.65 0.45 1.03 16 7 N -0.92 -53.60 11.32 21.45 0.24 -53.36 16 8 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 12 N -0.54 -23.53 4.63 -875.52 -4.06 -27.59 16 13 C 0.06 2.53 4.66 86.33 0.40 2.94 16 14 C -0.11 -3.40 6.09 30.65 0.19 -3.22 16 15 C -0.09 -2.80 5.49 30.68 0.17 -2.63 16 16 C 0.10 3.12 2.66 44.97 0.12 3.24 16 17 H 0.04 1.41 7.80 -2.39 -0.02 1.39 16 18 N -0.68 -18.04 6.26 -491.29 -3.08 -21.11 16 19 C 0.05 1.14 5.87 86.30 0.51 1.65 16 20 C 0.08 1.33 7.33 71.98 0.53 1.86 16 21 O -0.59 -11.55 13.61 -148.98 -2.03 -13.57 16 22 C 0.06 2.25 4.29 86.33 0.37 2.62 16 23 H 0.06 3.45 6.07 -2.39 -0.01 3.43 16 24 H 0.03 1.45 6.52 -2.39 -0.02 1.43 16 25 H 0.02 1.02 6.65 -2.38 -0.02 1.01 16 26 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 27 H 0.02 0.65 6.62 -2.39 -0.02 0.64 16 28 H 0.06 2.74 6.35 -2.39 -0.02 2.72 16 29 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.07 1.84 7.54 -2.39 -0.02 1.82 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.34 8.56 8.36 -89.70 -0.75 7.81 16 34 H 0.07 1.59 7.50 -2.39 -0.02 1.58 16 35 H 0.05 1.00 8.06 -2.39 -0.02 0.98 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.39 3.89 9.12 -74.05 -0.68 3.22 16 39 H 0.02 0.94 6.73 -2.39 -0.02 0.93 16 40 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 Total: -1.00 -64.27 306.09 -3.66 -67.93 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -0.40 Total: 18.42 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 3.63 Total: -16.80 kcal Atomic # 7 Polarization: -95.17 SS G_CDS: -6.89 Total: -102.06 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: -2.03 Total: -13.57 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -64.27 -3.66 -67.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708555427.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.957 kcal (2) G-P(sol) polarization free energy of solvation -64.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds