Wall clock time and date at job start Mon Mar 30 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 N 1.46903 * 109.46854 * 240.00378 * 2 1 3 13 13 C 1.46850 * 110.99883 * 184.21381 * 12 2 1 14 14 C 1.53042 * 109.52367 * 174.16180 * 13 12 2 15 15 C 1.53120 * 109.27888 * 59.17737 * 14 13 12 16 16 C 1.53122 * 109.15754 * 302.34707 * 15 14 13 17 17 H 1.08998 * 109.53685 * 297.68904 * 16 15 14 18 18 N 1.46897 * 109.49909 * 177.59747 * 16 15 14 19 19 C 1.46906 * 111.00151 * 85.19512 * 18 16 15 20 20 C 1.53003 * 109.47188 * 179.97438 * 19 18 16 21 21 O 1.42904 * 109.46922 * 64.99972 * 20 19 18 22 22 C 1.46849 * 111.00120 * 60.00265 * 12 2 1 23 23 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 25 25 H 1.08998 * 109.46846 * 59.99273 * 1 2 3 26 26 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.45900 * 294.17388 * 13 12 2 28 28 H 1.08996 * 109.46558 * 54.14257 * 13 12 2 29 29 H 1.09004 * 109.50144 * 299.23417 * 14 13 12 30 30 H 1.08997 * 109.53124 * 179.13948 * 14 13 12 31 31 H 1.08992 * 109.52034 * 182.44097 * 15 14 13 32 32 H 1.09001 * 109.52121 * 62.24759 * 15 14 13 33 33 H 1.00906 * 111.00048 * 209.15009 * 18 16 15 34 34 H 1.09000 * 109.47108 * 299.99663 * 19 18 16 35 35 H 1.09000 * 109.46701 * 59.99939 * 19 18 16 36 36 H 1.08989 * 109.47157 * 185.00087 * 20 19 18 37 37 H 1.09002 * 109.47296 * 305.00287 * 20 19 18 38 38 H 0.96698 * 113.99790 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.45747 * 305.85059 * 22 12 2 40 40 H 1.08995 * 109.45834 * 65.83339 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3283 -1.1157 4.0078 9 1 1.8377 -0.4127 5.2203 10 1 1.8338 -2.5160 4.0136 11 1 3.8133 -1.1152 4.0020 12 7 2.0196 -0.6924 -1.1995 13 6 3.4841 -0.7999 -1.1842 14 6 3.9470 -1.6500 -2.3696 15 6 3.4780 -0.9978 -3.6732 16 6 1.9539 -0.8535 -3.6429 17 1 1.4954 -1.8405 -3.5827 18 7 1.5011 -0.1763 -4.8653 19 6 1.3207 -1.1360 -5.9628 20 6 0.8492 -0.3952 -7.2157 21 8 1.8759 0.4954 -7.6572 22 6 1.5488 -0.0264 -2.4207 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8899 26 1 0.7082 1.1606 3.4845 27 1 3.9220 0.1955 -1.2582 28 1 3.8042 -1.2691 -0.2539 29 1 3.5205 -2.6499 -2.2889 30 1 5.0349 -1.7172 -2.3671 31 1 3.7681 -1.6226 -4.5179 32 1 3.9352 -0.0134 -3.7729 33 1 0.6534 0.3445 -4.6973 34 1 2.2681 -1.6338 -6.1696 35 1 0.5749 -1.8780 -5.6776 36 1 0.6302 -1.1161 -8.0033 37 1 -0.0508 0.1744 -6.9840 38 1 1.6452 0.9998 -8.4493 39 1 0.4632 0.0660 -2.3883 40 1 1.9960 0.9652 -2.4889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708555428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:33 Heat of formation + Delta-G solvation = -48.999891 kcal Electronic energy + Delta-G solvation = -18285.757465 eV Core-core repulsion = 15521.099934 eV Total energy + Delta-G solvation = -2764.657531 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.78027 -37.19632 -35.32794 -33.49511 -31.73975 -30.15821 -28.37059 -27.00402 -25.06965 -23.57647 -21.93901 -21.46710 -19.74586 -19.01700 -17.63333 -16.31834 -15.85946 -15.29017 -15.09581 -14.34252 -14.07117 -13.93478 -13.62297 -13.29824 -12.74508 -12.64312 -12.60002 -12.25257 -11.95983 -11.48413 -11.06369 -10.92009 -10.79445 -10.66918 -10.42871 -10.33864 -10.20548 -10.11691 -10.04812 -9.80178 -9.44516 -8.80800 -8.39678 -8.22675 -7.11501 -5.99150 -4.03600 3.33539 3.37729 3.40575 4.12104 4.21060 4.44145 5.00005 5.06311 5.08376 5.21418 5.32066 5.40934 5.45739 5.57503 5.63166 5.78674 5.80813 5.97970 6.10048 6.28078 6.39900 6.43851 6.46787 6.49107 6.81127 6.83625 6.90903 7.07510 7.16140 7.26289 7.49275 7.56041 7.59445 7.78489 7.84917 8.25015 8.36021 8.64536 9.02841 9.61241 11.07688 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044778 B = 0.005015 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.154462 B = 5581.481053 C = 5981.198763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.213 3.787 3 H -0.002 1.002 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.288 1.288 10 H -0.277 1.277 11 H -0.278 1.278 12 N -0.532 5.532 13 C 0.063 3.937 14 C -0.118 4.118 15 C -0.101 4.101 16 C 0.091 3.909 17 H 0.048 0.952 18 N -0.679 5.679 19 C 0.059 3.941 20 C 0.080 3.920 21 O -0.558 6.558 22 C 0.054 3.946 23 H 0.033 0.967 24 H 0.085 0.915 25 H 0.007 0.993 26 H 0.260 0.740 27 H 0.019 0.981 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.337 0.663 34 H 0.078 0.922 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.043 0.957 38 H 0.371 0.629 39 H 0.069 0.931 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.043 -2.635 -16.003 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.107 3.893 3 H 0.015 0.985 4 C -0.542 4.542 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.257 5.257 13 C -0.065 4.065 14 C -0.156 4.156 15 C -0.140 4.140 16 C -0.019 4.019 17 H 0.066 0.934 18 N -0.310 5.310 19 C -0.071 4.071 20 C 0.001 3.999 21 O -0.362 6.362 22 C -0.075 4.075 23 H 0.052 0.948 24 H 0.103 0.897 25 H 0.026 0.974 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.104 0.896 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.155 0.845 34 H 0.096 0.904 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.061 0.939 38 H 0.217 0.783 39 H 0.087 0.913 40 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 0.707 -3.061 -15.507 15.822 hybrid contribution -0.611 0.175 0.614 0.883 sum 0.096 -2.886 -14.893 15.170 Atomic orbital electron populations 1.21840 0.97823 0.99511 0.99819 1.19212 0.92226 0.92006 0.85817 0.98472 1.21122 1.31050 1.12272 0.89768 0.91885 1.24933 0.95219 0.95072 0.98997 1.69887 1.36919 1.23012 1.23473 0.86585 0.79130 0.79708 0.82122 1.21384 1.20254 1.20319 1.62006 1.09115 1.52656 1.01937 1.21963 0.88819 0.97501 0.98253 1.21647 0.99352 0.99897 0.94744 1.21515 0.94880 1.00714 0.96850 1.21558 0.95884 0.96221 0.88199 0.93430 1.60432 1.37673 1.26801 1.06130 1.22013 1.01045 0.93599 0.90413 1.22195 0.90132 0.92062 0.95479 1.86649 1.42364 1.58530 1.48669 1.22134 1.00014 0.95112 0.90246 0.94781 0.89665 0.97425 0.92961 0.96298 0.89578 0.91827 0.92328 0.93103 0.91935 0.84468 0.90392 0.94014 0.93645 0.93886 0.78331 0.91309 0.95385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 8.75 37.16 0.33 -2.93 16 2 C 0.21 5.48 2.07 -68.86 -0.14 5.33 16 3 H 0.00 -0.07 8.14 -51.93 -0.42 -0.49 16 4 C -0.50 -13.85 7.86 -34.44 -0.27 -14.12 16 5 H 0.06 1.72 6.40 -52.49 -0.34 1.39 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.89 -25.63 11.32 55.43 0.63 -25.00 16 8 Si 0.90 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 N -0.53 -11.68 4.52 -228.08 -1.03 -12.71 16 13 C 0.06 1.28 5.21 -3.83 -0.02 1.26 16 14 C -0.12 -1.95 6.09 -26.65 -0.16 -2.11 16 15 C -0.10 -1.61 5.49 -26.61 -0.15 -1.75 16 16 C 0.09 1.46 2.66 -67.63 -0.18 1.28 16 17 H 0.05 0.79 7.80 -51.93 -0.41 0.39 16 18 N -0.68 -9.57 6.26 -106.64 -0.67 -10.24 16 19 C 0.06 0.69 5.87 -3.82 -0.02 0.67 16 20 C 0.08 0.76 7.33 37.16 0.27 1.03 16 21 O -0.56 -6.15 13.61 -35.23 -0.48 -6.63 16 22 C 0.05 1.03 4.49 -3.83 -0.02 1.01 16 23 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 24 H 0.08 2.30 6.07 -51.93 -0.32 1.98 16 25 H 0.01 0.15 6.28 -51.93 -0.33 -0.17 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.09 1.88 6.02 -51.93 -0.31 1.57 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 32 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.34 4.50 8.36 -39.29 -0.33 4.18 16 34 H 0.08 0.98 7.50 -51.93 -0.39 0.59 16 35 H 0.04 0.45 8.06 -51.93 -0.42 0.03 16 36 H 0.05 0.34 8.14 -51.94 -0.42 -0.08 16 37 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.37 2.27 9.12 45.56 0.42 2.69 16 39 H 0.07 1.30 6.00 -51.93 -0.31 0.99 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -30.27 308.39 -8.44 -38.71 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.06 Total: 3.65 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -0.46 Total: -8.80 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -1.07 Total: -47.95 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.48 Total: -6.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.27 -8.44 -38.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708555428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.291 kcal (2) G-P(sol) polarization free energy of solvation -30.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds