Wall clock time and date at job start Mon Mar 30 2020 05:23:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 5 5 H 1.08002 * 120.00516 * 119.99366 * 4 2 1 6 6 C 1.37884 * 119.99783 * 299.99666 * 4 2 1 7 7 N 1.31514 * 119.99707 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99956 * 180.27458 * 6 4 2 9 9 H 1.48497 * 109.47172 * 179.72730 * 8 6 4 10 10 H 1.48506 * 109.47132 * 299.72429 * 8 6 4 11 11 H 1.48501 * 109.47173 * 59.72550 * 8 6 4 12 12 N 1.46903 * 109.46854 * 240.00378 * 2 1 3 13 13 C 1.46850 * 110.99883 * 184.21381 * 12 2 1 14 14 C 1.53042 * 109.52367 * 174.16180 * 13 12 2 15 15 C 1.53120 * 109.27888 * 59.17737 * 14 13 12 16 16 C 1.53122 * 109.15754 * 302.34707 * 15 14 13 17 17 H 1.08998 * 109.53685 * 297.68904 * 16 15 14 18 18 N 1.46897 * 109.49909 * 177.59747 * 16 15 14 19 19 C 1.46906 * 111.00151 * 85.19512 * 18 16 15 20 20 C 1.53003 * 109.47188 * 179.97438 * 19 18 16 21 21 O 1.42904 * 109.46922 * 64.99972 * 20 19 18 22 22 C 1.46849 * 111.00120 * 60.00265 * 12 2 1 23 23 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 25 25 H 1.08998 * 109.46846 * 59.99273 * 1 2 3 26 26 H 0.97005 * 119.99656 * 179.97438 * 7 6 4 27 27 H 1.08999 * 109.45900 * 294.17388 * 13 12 2 28 28 H 1.08996 * 109.46558 * 54.14257 * 13 12 2 29 29 H 1.09004 * 109.50144 * 299.23417 * 14 13 12 30 30 H 1.08997 * 109.53124 * 179.13948 * 14 13 12 31 31 H 1.08992 * 109.52034 * 182.44097 * 15 14 13 32 32 H 1.09001 * 109.52121 * 62.24759 * 15 14 13 33 33 H 1.00906 * 111.00048 * 209.15009 * 18 16 15 34 34 H 1.09000 * 109.47108 * 299.99663 * 19 18 16 35 35 H 1.09000 * 109.46701 * 59.99939 * 19 18 16 36 36 H 1.08989 * 109.47157 * 185.00087 * 20 19 18 37 37 H 1.09002 * 109.47296 * 305.00287 * 20 19 18 38 38 H 0.96698 * 113.99790 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.45747 * 305.85059 * 22 12 2 40 40 H 1.08995 * 109.45834 * 65.83339 * 22 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5887 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8295 2.6034 8 14 2.3283 -1.1157 4.0078 9 1 1.8377 -0.4127 5.2203 10 1 1.8338 -2.5160 4.0136 11 1 3.8133 -1.1152 4.0020 12 7 2.0196 -0.6924 -1.1995 13 6 3.4841 -0.7999 -1.1842 14 6 3.9470 -1.6500 -2.3696 15 6 3.4780 -0.9978 -3.6732 16 6 1.9539 -0.8535 -3.6429 17 1 1.4954 -1.8405 -3.5827 18 7 1.5011 -0.1763 -4.8653 19 6 1.3207 -1.1360 -5.9628 20 6 0.8492 -0.3952 -7.2157 21 8 1.8759 0.4954 -7.6572 22 6 1.5488 -0.0264 -2.4207 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8899 26 1 0.7082 1.1606 3.4845 27 1 3.9220 0.1955 -1.2582 28 1 3.8042 -1.2691 -0.2539 29 1 3.5205 -2.6499 -2.2889 30 1 5.0349 -1.7172 -2.3671 31 1 3.7681 -1.6226 -4.5179 32 1 3.9352 -0.0134 -3.7729 33 1 0.6534 0.3445 -4.6973 34 1 2.2681 -1.6338 -6.1696 35 1 0.5749 -1.8780 -5.6776 36 1 0.6302 -1.1161 -8.0033 37 1 -0.0508 0.1744 -6.9840 38 1 1.6452 0.9998 -8.4493 39 1 0.4632 0.0660 -2.3883 40 1 1.9960 0.9652 -2.4889 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708555428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:33 Heat of formation + Delta-G solvation = -73.367080 kcal Electronic energy + Delta-G solvation = -18286.814106 eV Core-core repulsion = 15521.099934 eV Total energy + Delta-G solvation = -2765.714172 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.26327 -38.16177 -36.69999 -35.11025 -33.54185 -31.38807 -30.22727 -28.26205 -26.99476 -25.16318 -23.13606 -22.72668 -21.53350 -20.53213 -18.39061 -18.34703 -17.43211 -16.51857 -16.28845 -16.11810 -15.53560 -15.28529 -14.91840 -14.74563 -14.29906 -14.14036 -13.80225 -13.62511 -13.36200 -13.31974 -12.85781 -12.61611 -12.29428 -12.20794 -12.12775 -12.11175 -11.80126 -11.65992 -11.52603 -11.03160 -10.84653 -10.75750 -10.50090 -9.33009 -8.95424 -8.11330 -6.23386 1.42908 1.44724 1.52282 2.42153 2.96851 3.17391 3.48647 3.58133 3.86770 4.00532 4.19361 4.29501 4.34885 4.37084 4.48077 4.60860 4.63372 4.76758 4.77516 4.81528 4.89029 4.98301 5.00502 5.01881 5.10172 5.12938 5.21643 5.29621 5.45675 5.52391 5.71985 5.77562 6.10439 6.25133 6.40734 6.45689 6.75244 6.91100 7.04089 7.45715 8.94778 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.044778 B = 0.005015 C = 0.004680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.154462 B = 5581.481053 C = 5981.198763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.216 3.784 3 H -0.043 1.043 4 C -0.520 4.520 5 H 0.061 0.939 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.961 3.039 9 H -0.284 1.284 10 H -0.270 1.270 11 H -0.272 1.272 12 N -0.534 5.534 13 C 0.062 3.938 14 C -0.107 4.107 15 C -0.096 4.096 16 C 0.103 3.897 17 H 0.048 0.952 18 N -0.685 5.685 19 C 0.055 3.945 20 C 0.081 3.919 21 O -0.586 6.586 22 C 0.057 3.943 23 H 0.032 0.968 24 H 0.060 0.940 25 H 0.029 0.971 26 H 0.262 0.738 27 H 0.004 0.996 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.051 0.949 33 H 0.341 0.659 34 H 0.070 0.930 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.052 0.948 38 H 0.391 0.609 39 H 0.069 0.931 40 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.219 -3.928 -17.350 17.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.109 3.891 3 H -0.026 1.026 4 C -0.558 4.558 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.787 3.213 9 H -0.210 1.210 10 H -0.196 1.196 11 H -0.197 1.197 12 N -0.259 5.259 13 C -0.066 4.066 14 C -0.145 4.145 15 C -0.134 4.134 16 C -0.007 4.007 17 H 0.066 0.934 18 N -0.317 5.317 19 C -0.074 4.074 20 C 0.003 3.997 21 O -0.393 6.393 22 C -0.071 4.071 23 H 0.051 0.949 24 H 0.079 0.921 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.023 0.977 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.159 0.841 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.239 0.761 39 H 0.087 0.913 40 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 0.882 -4.354 -16.894 17.468 hybrid contribution -0.671 0.627 0.966 1.333 sum 0.210 -3.728 -15.927 16.359 Atomic orbital electron populations 1.21645 0.97168 0.99240 0.99677 1.19036 0.92747 0.89969 0.87326 1.02564 1.21392 1.31233 1.12355 0.90850 0.92101 1.25736 0.95337 0.95741 1.01960 1.70022 1.37762 1.24200 1.24120 0.85560 0.78725 0.78689 0.78353 1.20973 1.19554 1.19673 1.61985 1.10140 1.52078 1.01744 1.21991 0.87851 0.97371 0.99404 1.21574 1.00764 0.99035 0.93144 1.21469 0.94508 1.00411 0.97043 1.21367 0.96165 0.95508 0.87684 0.93444 1.60440 1.38192 1.27437 1.05644 1.22132 1.01207 0.93657 0.90445 1.22222 0.89847 0.92474 0.95128 1.86582 1.43411 1.59214 1.50114 1.22162 0.99786 0.94797 0.90389 0.94880 0.92118 0.95237 0.92930 0.97734 0.91484 0.91398 0.90031 0.91013 0.93054 0.84067 0.91105 0.92783 0.91165 0.92988 0.76065 0.91313 0.96966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.75 71.98 0.63 -5.35 16 2 C 0.22 11.41 2.07 44.17 0.09 11.50 16 3 H -0.04 -2.57 8.14 -2.39 -0.02 -2.59 16 4 C -0.52 -29.12 7.86 25.60 0.20 -28.92 16 5 H 0.06 3.37 6.40 -2.91 -0.02 3.35 16 6 C 0.01 0.61 5.30 84.66 0.45 1.06 16 7 N -0.92 -53.86 11.32 21.45 0.24 -53.62 16 8 Si 0.96 44.05 29.54 68.60 2.03 46.08 16 9 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 10 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.53 -23.69 4.52 -875.51 -3.96 -27.65 16 13 C 0.06 2.54 5.21 86.33 0.45 2.99 16 14 C -0.11 -3.36 6.09 30.65 0.19 -3.18 16 15 C -0.10 -2.87 5.49 30.68 0.17 -2.70 16 16 C 0.10 3.15 2.66 44.97 0.12 3.27 16 17 H 0.05 1.48 7.80 -2.39 -0.02 1.46 16 18 N -0.68 -18.11 6.26 -491.29 -3.08 -21.19 16 19 C 0.05 1.14 5.87 86.30 0.51 1.65 16 20 C 0.08 1.32 7.33 71.98 0.53 1.85 16 21 O -0.59 -11.59 13.61 -148.98 -2.03 -13.61 16 22 C 0.06 2.18 4.49 86.32 0.39 2.56 16 23 H 0.03 1.61 8.14 -2.39 -0.02 1.59 16 24 H 0.06 3.35 6.07 -2.39 -0.01 3.33 16 25 H 0.03 1.30 6.28 -2.39 -0.01 1.28 16 26 H 0.26 14.55 8.31 -92.70 -0.77 13.78 16 27 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 28 H 0.07 2.98 6.02 -2.39 -0.01 2.96 16 29 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 31 H 0.07 1.88 7.54 -2.39 -0.02 1.86 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.34 8.57 8.36 -89.69 -0.75 7.82 16 34 H 0.07 1.59 7.50 -2.39 -0.02 1.57 16 35 H 0.05 1.01 8.06 -2.39 -0.02 0.99 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.39 3.91 9.12 -74.06 -0.68 3.24 16 39 H 0.07 2.57 6.00 -2.39 -0.01 2.55 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -65.28 308.39 -3.47 -68.75 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -0.40 Total: 16.50 kcal Atomic # 6 Polarization: -18.98 SS G_CDS: 3.72 Total: -15.26 kcal Atomic # 7 Polarization: -95.67 SS G_CDS: -6.79 Total: -102.46 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: -2.03 Total: -13.61 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -65.28 -3.47 -68.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708555428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.613 kcal (2) G-P(sol) polarization free energy of solvation -65.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds