Wall clock time and date at job start Mon Mar 30 2020 04:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.62720 * 2 1 4 4 C 1.54319 * 110.70626 * 236.89765 * 2 1 3 5 5 N 1.47444 * 107.23160 * 219.33014 * 4 2 1 6 6 C 1.46899 * 111.00082 * 236.74205 * 5 4 2 7 7 C 1.52996 * 109.47055 * 290.13023 * 6 5 4 8 8 O 1.42898 * 109.47585 * 64.99946 * 7 6 5 9 9 C 1.42903 * 114.00447 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47349 * 180.02562 * 9 8 7 11 11 H 1.08001 * 119.99895 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00209 * 180.02562 * 10 9 8 13 13 N 1.31514 * 119.99899 * 0.02562 * 12 10 9 14 14 Si 1.86797 * 120.00438 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46723 * 0.02562 * 14 12 10 16 16 H 1.48500 * 109.47063 * 119.99974 * 14 12 10 17 17 H 1.48498 * 109.47488 * 240.00193 * 14 12 10 18 18 C 1.47840 * 108.56765 * 359.01195 * 5 4 2 19 19 C 1.54913 * 104.79543 * 24.09456 * 18 5 4 20 20 H 1.08998 * 110.98718 * 81.02398 * 19 18 5 21 21 C 1.52997 * 110.98638 * 204.83590 * 19 18 5 22 22 N 1.46896 * 109.47620 * 287.26597 * 21 19 18 23 23 H 1.09001 * 109.47002 * 181.64663 * 1 2 3 24 24 H 1.08993 * 109.46955 * 301.65100 * 1 2 3 25 25 H 1.09000 * 109.47050 * 61.64929 * 1 2 3 26 26 H 1.08995 * 109.89116 * 338.74272 * 4 2 1 27 27 H 1.09006 * 109.88742 * 99.76123 * 4 2 1 28 28 H 1.09000 * 109.46792 * 50.12865 * 6 5 4 29 29 H 1.08998 * 109.46983 * 170.13002 * 6 5 4 30 30 H 1.09007 * 109.46964 * 185.00277 * 7 6 5 31 31 H 1.09000 * 109.47390 * 304.99577 * 7 6 5 32 32 H 1.08996 * 109.46904 * 300.00483 * 9 8 7 33 33 H 1.09001 * 109.46631 * 60.00199 * 9 8 7 34 34 H 0.97003 * 120.00303 * 180.02562 * 13 12 10 35 35 H 1.09000 * 110.37585 * 142.92071 * 18 5 4 36 36 H 1.08999 * 110.37554 * 265.15089 * 18 5 4 37 37 H 1.09000 * 109.47243 * 47.27369 * 21 19 18 38 38 H 1.09004 * 109.47139 * 167.26754 * 21 19 18 39 39 H 1.00897 * 110.99886 * 56.04410 * 22 21 19 40 40 H 1.00904 * 111.00358 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9140 1.0201 0.0000 4 6 2.0757 -0.7884 -1.2092 5 7 3.2491 -1.5488 -0.7414 6 6 4.4407 -1.2189 -1.5346 7 6 4.2852 -1.7840 -2.9478 8 8 3.1994 -1.1286 -3.6062 9 6 2.9681 -1.5847 -4.9406 10 6 1.8079 -0.8293 -5.5357 11 1 1.2979 -0.0764 -4.9531 12 6 1.3969 -1.1000 -6.8236 13 7 2.0170 -2.0179 -7.5325 14 14 -0.0417 -0.1642 -7.5611 15 1 -0.5631 0.8067 -6.5657 16 1 0.4112 0.5650 -8.7729 17 1 -1.1165 -1.1197 -7.9312 18 6 3.4652 -1.2477 0.6898 19 6 2.0785 -0.7966 1.2129 20 1 1.4460 -1.6564 1.4337 21 6 2.2228 0.1047 2.4408 22 7 2.6287 -0.7047 3.5975 23 1 -0.3633 -1.0273 0.0295 24 1 -0.3633 0.5392 0.8748 25 1 -0.3633 0.4880 -0.9044 26 1 1.3133 -1.4735 -1.5798 27 1 2.3694 -0.0980 -2.0000 28 1 4.5540 -0.1360 -1.5867 29 1 5.3223 -1.6543 -1.0641 30 1 5.2046 -1.6171 -3.5091 31 1 4.0833 -2.8537 -2.8912 32 1 3.8602 -1.4133 -5.5429 33 1 2.7390 -2.6503 -4.9256 34 1 1.7281 -2.2081 -8.4388 35 1 3.7985 -2.1402 1.2193 36 1 4.1946 -0.4457 0.8029 37 1 2.9788 0.8654 2.2463 38 1 1.2682 0.5868 2.6517 39 1 3.4783 -1.2129 3.4029 40 1 2.7303 -0.1319 4.4219 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708843319.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:46 Heat of formation + Delta-G solvation = -80.513298 kcal Electronic energy + Delta-G solvation = -18087.684178 eV Core-core repulsion = 15321.660122 eV Total energy + Delta-G solvation = -2766.024055 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.55540 -38.49801 -35.93431 -34.89965 -33.96096 -31.12617 -29.69257 -28.78267 -26.76684 -24.95144 -24.44558 -22.74363 -21.45705 -20.84421 -18.59885 -17.72080 -17.27050 -16.90358 -16.38696 -16.30419 -15.58593 -15.40254 -15.27306 -14.56786 -14.52237 -14.35927 -13.82795 -13.69752 -13.43107 -13.30603 -12.99626 -12.86457 -12.69231 -12.38501 -12.35769 -12.09208 -11.72062 -11.59804 -11.51997 -11.36736 -11.10674 -10.86438 -10.20406 -9.58640 -9.22168 -8.32336 -6.44366 1.38829 1.40376 1.54798 2.33923 3.01606 3.02512 3.19780 3.50386 3.68124 3.73100 4.05313 4.20760 4.29741 4.36705 4.40629 4.48950 4.53941 4.62666 4.66148 4.70569 4.77681 4.83551 4.89193 4.91777 4.98393 5.09543 5.18322 5.20766 5.28352 5.34646 5.50721 5.54775 5.96541 6.07484 6.19975 6.26556 6.54139 6.63681 6.82899 7.27649 8.80462 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.031947 B = 0.005134 C = 0.004523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.227794 B = 5452.698586 C = 6189.465318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.105 4.105 3 H 0.076 0.924 4 C 0.058 3.942 5 N -0.542 5.542 6 C 0.066 3.934 7 C 0.056 3.944 8 O -0.398 6.398 9 C 0.210 3.790 10 C -0.542 4.542 11 H 0.061 0.939 12 C 0.006 3.994 13 N -0.932 5.932 14 Si 0.982 3.018 15 H -0.263 1.263 16 H -0.271 1.271 17 H -0.272 1.272 18 C 0.047 3.953 19 C -0.082 4.082 20 H 0.080 0.920 21 C 0.080 3.920 22 N -0.857 5.857 23 H 0.051 0.949 24 H 0.073 0.927 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.110 0.890 30 H 0.048 0.952 31 H 0.038 0.962 32 H -0.017 1.017 33 H -0.020 1.020 34 H 0.270 0.730 35 H 0.087 0.913 36 H 0.052 0.948 37 H 0.031 0.969 38 H 0.076 0.924 39 H 0.345 0.655 40 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.362 4.619 19.740 20.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.125 4.125 3 H 0.094 0.906 4 C -0.070 4.070 5 N -0.266 5.266 6 C -0.063 4.063 7 C -0.022 4.022 8 O -0.318 6.318 9 C 0.135 3.865 10 C -0.579 4.579 11 H 0.080 0.920 12 C -0.193 4.193 13 N -0.571 5.571 14 Si 0.805 3.195 15 H -0.187 1.187 16 H -0.196 1.196 17 H -0.197 1.197 18 C -0.080 4.080 19 C -0.101 4.101 20 H 0.098 0.902 21 C -0.051 4.051 22 N -0.388 5.388 23 H 0.070 0.930 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.065 0.935 27 H 0.069 0.931 28 H 0.056 0.944 29 H 0.128 0.872 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.001 0.999 33 H -0.002 1.002 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.094 0.906 39 H 0.158 0.842 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 1.494 3.761 19.484 19.900 hybrid contribution 0.738 1.206 -1.080 1.779 sum 2.232 4.967 18.404 19.193 Atomic orbital electron populations 1.21684 0.93748 1.01916 1.01950 1.22388 0.97036 0.98863 0.94201 0.90572 1.22772 0.92578 0.95280 0.96361 1.63475 1.03861 1.56131 1.03168 1.22272 0.93942 0.98594 0.91449 1.22560 0.89826 0.96346 0.93445 1.87847 1.51791 1.63555 1.28579 1.19779 0.94830 0.93095 0.78823 1.21375 1.15636 1.21759 0.99178 0.92043 1.25957 1.00286 0.96195 0.96818 1.70084 1.42710 1.33307 1.11037 0.85155 0.77826 0.78351 0.78197 1.18737 1.19648 1.19744 1.23154 0.96946 1.00327 0.87570 1.22310 0.96029 0.98322 0.93447 0.90178 1.21629 1.00483 0.93596 0.89385 1.58673 1.41316 1.32703 1.06086 0.92969 0.90798 0.93358 0.93461 0.93060 0.94400 0.87236 0.93375 0.94340 0.99918 1.00234 0.92105 0.89439 0.93008 0.95054 0.90599 0.84167 0.83564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.13 71.98 0.66 -2.62 16 2 C -0.10 -2.70 3.01 -9.61 -0.03 -2.73 16 3 H 0.08 1.87 8.04 -2.39 -0.02 1.85 16 4 C 0.06 2.00 5.28 86.65 0.46 2.46 16 5 N -0.54 -16.82 5.16 -885.55 -4.57 -21.38 16 6 C 0.07 1.99 5.18 86.30 0.45 2.44 16 7 C 0.06 2.16 6.24 71.98 0.45 2.61 16 8 O -0.40 -19.68 7.41 -148.98 -1.10 -20.78 16 9 C 0.21 12.09 5.69 71.23 0.41 12.50 16 10 C -0.54 -32.72 9.43 25.60 0.24 -32.47 16 11 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 12 C 0.01 0.33 5.46 84.65 0.46 0.79 16 13 N -0.93 -56.98 13.29 21.45 0.28 -56.69 16 14 Si 0.98 44.94 29.54 68.60 2.03 46.96 16 15 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 16 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 17 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 18 C 0.05 1.07 5.62 86.78 0.49 1.55 16 19 C -0.08 -1.77 2.69 -9.41 -0.03 -1.80 16 20 H 0.08 1.96 8.04 -2.39 -0.02 1.94 16 21 C 0.08 1.33 6.29 86.30 0.54 1.87 16 22 N -0.86 -12.32 9.62 -186.72 -1.80 -14.12 16 23 H 0.05 1.31 8.13 -2.39 -0.02 1.29 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 26 H 0.05 1.89 7.82 -2.39 -0.02 1.88 16 27 H 0.05 2.09 5.79 -2.38 -0.01 2.07 16 28 H 0.04 1.16 7.96 -2.39 -0.02 1.14 16 29 H 0.11 2.58 8.07 -2.39 -0.02 2.57 16 30 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 33 H -0.02 -1.23 8.14 -2.39 -0.02 -1.25 16 34 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 35 H 0.09 1.79 8.13 -2.39 -0.02 1.77 16 36 H 0.05 1.05 7.58 -2.39 -0.02 1.03 16 37 H 0.03 0.49 7.97 -2.39 -0.02 0.47 16 38 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.35 4.42 8.48 -89.70 -0.76 3.66 16 40 H 0.35 3.69 9.08 -89.69 -0.81 2.88 16 Total: -1.00 -67.61 318.57 -1.63 -69.24 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -0.57 Total: 12.16 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 4.10 Total: -15.39 kcal Atomic # 7 Polarization: -86.12 SS G_CDS: -6.08 Total: -92.20 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -1.10 Total: -20.78 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Total: -67.61 -1.63 -69.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708843319.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.274 kcal (2) G-P(sol) polarization free energy of solvation -67.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds