Wall clock time and date at job start Mon Mar 30 2020 04:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 110.28875 * 2 1 4 4 C 1.54383 * 110.41041 * 237.81804 * 2 1 3 5 5 N 1.48563 * 104.59512 * 217.20496 * 4 2 1 6 6 C 1.46899 * 110.99831 * 159.03444 * 5 4 2 7 7 C 1.52996 * 109.46994 * 54.58383 * 6 5 4 8 8 O 1.42901 * 109.47091 * 64.99805 * 7 6 5 9 9 C 1.42905 * 114.00134 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47264 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99574 * 359.97438 * 10 9 8 12 12 C 1.37874 * 119.99789 * 179.97438 * 10 9 8 13 13 N 1.31512 * 119.99734 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 120.00111 * 0.02562 * 12 10 9 15 15 H 1.48498 * 109.47123 * 89.99915 * 14 12 10 16 16 H 1.48498 * 109.47161 * 209.99603 * 14 12 10 17 17 H 1.48497 * 109.47329 * 329.99749 * 14 12 10 18 18 C 1.48568 * 104.22051 * 39.48010 * 5 4 2 19 19 C 1.54256 * 110.32689 * 122.12860 * 2 1 3 20 20 H 1.09006 * 110.32623 * 237.89635 * 19 2 1 21 21 C 1.53003 * 110.41082 * 0.05494 * 19 2 1 22 22 N 1.46896 * 109.47394 * 182.14182 * 21 19 2 23 23 H 1.09000 * 109.46882 * 297.87375 * 1 2 3 24 24 H 1.08996 * 109.47311 * 57.87374 * 1 2 3 25 25 H 1.08996 * 109.46737 * 177.87492 * 1 2 3 26 26 H 1.08995 * 110.41535 * 98.42529 * 4 2 1 27 27 H 1.09004 * 110.40886 * 335.98144 * 4 2 1 28 28 H 1.08995 * 109.47275 * 294.58268 * 6 5 4 29 29 H 1.09003 * 109.46741 * 174.57922 * 6 5 4 30 30 H 1.08994 * 109.47303 * 304.99818 * 7 6 5 31 31 H 1.09002 * 109.47060 * 184.99348 * 7 6 5 32 32 H 1.09001 * 109.47103 * 300.00246 * 9 8 7 33 33 H 1.09004 * 109.47054 * 59.99750 * 9 8 7 34 34 H 0.97007 * 120.00011 * 180.02562 * 13 12 10 35 35 H 1.08995 * 110.41210 * 79.29670 * 18 5 4 36 36 H 1.08993 * 110.40981 * 201.73918 * 18 5 4 37 37 H 1.09001 * 109.47220 * 302.14682 * 21 19 2 38 38 H 1.09001 * 109.46668 * 62.14074 * 21 19 2 39 39 H 1.00902 * 110.99534 * 56.04853 * 22 21 19 40 40 H 1.00894 * 111.00066 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0223 0.0000 4 6 2.0684 -0.7706 -1.2246 5 7 3.2722 -1.4806 -0.7206 6 6 3.6119 -2.6193 -1.5842 7 6 3.7635 -2.1367 -3.0282 8 8 4.8785 -1.2476 -3.1187 9 6 5.1095 -0.7368 -4.4332 10 6 6.3016 0.1848 -4.4118 11 1 6.8298 0.3630 -3.4868 12 6 6.7179 0.8005 -5.5731 13 7 7.7580 1.6051 -5.5543 14 14 5.8039 0.4927 -7.1728 15 1 4.7191 1.4955 -7.3239 16 1 6.7482 0.6095 -8.3129 17 1 5.2177 -0.8715 -7.1535 18 6 2.8829 -1.9400 0.6376 19 6 2.0659 -0.7693 1.2250 20 1 2.7068 -0.1245 1.8264 21 6 0.9065 -1.3015 2.0698 22 7 1.4386 -1.9853 3.2561 23 1 -0.3633 0.4805 0.9084 24 1 -0.3634 0.5465 -0.8703 25 1 -0.3632 -1.0269 -0.0381 26 1 2.3413 -0.0774 -2.0202 27 1 1.3264 -1.4856 -1.5801 28 1 2.8184 -3.3646 -1.5316 29 1 4.5496 -3.0624 -1.2489 30 1 2.8568 -1.6147 -3.3339 31 1 3.9278 -2.9932 -3.6821 32 1 5.3018 -1.5644 -5.1160 33 1 4.2307 -0.1859 -4.7685 34 1 8.0507 2.0386 -6.3713 35 1 2.2684 -2.8380 0.5736 36 1 3.7690 -2.1272 1.2440 37 1 0.2736 -0.4710 2.3825 38 1 0.3187 -2.0037 1.4787 39 1 2.0400 -1.3731 3.7869 40 1 0.6919 -2.3457 3.8310 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708843322.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:49 Heat of formation + Delta-G solvation = -71.260323 kcal Electronic energy + Delta-G solvation = -17951.496668 eV Core-core repulsion = 15185.873852 eV Total energy + Delta-G solvation = -2765.622816 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.66703 -38.61736 -36.12309 -34.84884 -33.83074 -31.34479 -30.01202 -28.90985 -26.78649 -24.87442 -23.96153 -23.30996 -21.68874 -19.94396 -19.02267 -17.68861 -17.34773 -16.88982 -16.48207 -16.32294 -15.80604 -15.59088 -15.30861 -15.02074 -14.69619 -14.32802 -13.70977 -13.42526 -13.35608 -13.24857 -13.06317 -12.83969 -12.73246 -12.61036 -12.10119 -11.89059 -11.79191 -11.68066 -11.54559 -11.31882 -11.20661 -10.92392 -10.32282 -9.50325 -9.29104 -8.37313 -6.45257 1.31913 1.35686 1.46661 2.29134 2.94842 2.98988 3.16705 3.50377 3.62343 3.89998 3.98772 4.16739 4.25009 4.25759 4.41523 4.50049 4.51331 4.53030 4.58610 4.61229 4.67059 4.75464 4.79886 4.85652 4.93888 4.99170 5.02566 5.19826 5.24456 5.32166 5.43734 5.45219 5.92950 5.99879 6.15683 6.28865 6.59062 6.65205 6.78971 7.19405 8.80250 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.038801 B = 0.004497 C = 0.004423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.452355 B = 6224.446823 C = 6329.396252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 H 0.066 0.934 4 C 0.038 3.962 5 N -0.533 5.533 6 C 0.056 3.944 7 C 0.051 3.949 8 O -0.395 6.395 9 C 0.180 3.820 10 C -0.545 4.545 11 H 0.026 0.974 12 C 0.012 3.988 13 N -0.943 5.943 14 Si 0.958 3.042 15 H -0.259 1.259 16 H -0.271 1.271 17 H -0.246 1.246 18 C 0.055 3.945 19 C -0.082 4.082 20 H 0.068 0.932 21 C 0.077 3.923 22 N -0.861 5.861 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.058 0.942 32 H 0.011 0.989 33 H 0.007 0.993 34 H 0.273 0.727 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.344 0.656 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.847 -8.048 12.790 24.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.111 4.111 3 H 0.085 0.915 4 C -0.090 4.090 5 N -0.257 5.257 6 C -0.072 4.072 7 C -0.026 4.026 8 O -0.314 6.314 9 C 0.104 3.896 10 C -0.583 4.583 11 H 0.045 0.955 12 C -0.185 4.185 13 N -0.583 5.583 14 Si 0.779 3.221 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.169 1.169 18 C -0.072 4.072 19 C -0.102 4.102 20 H 0.087 0.913 21 C -0.054 4.054 22 N -0.392 5.392 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.029 0.971 33 H 0.025 0.975 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.157 0.843 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -18.793 -8.060 12.330 23.878 hybrid contribution -0.803 0.423 -0.429 1.004 sum -19.597 -7.636 11.900 24.165 Atomic orbital electron populations 1.21889 0.92730 1.02464 1.02544 1.21869 0.96958 0.98934 0.93330 0.91509 1.23153 0.90798 0.97330 0.97680 1.65353 1.33945 1.23405 1.03046 1.22240 1.01547 0.92216 0.91205 1.22729 0.89529 0.93133 0.97186 1.87981 1.49211 1.63736 1.30484 1.20292 0.94574 0.92761 0.81993 1.21163 1.13527 1.27592 0.95996 0.95511 1.25865 0.95771 0.93721 1.03171 1.70042 1.27091 1.31004 1.30122 0.85580 0.78855 0.80434 0.77279 1.18345 1.19635 1.16926 1.22994 0.98513 0.96671 0.89049 1.21881 0.96609 0.95899 0.95793 0.91312 1.21902 0.94719 0.96928 0.91810 1.58666 1.25545 1.43204 1.11793 0.90891 0.92535 0.91670 0.92680 0.92694 0.90915 0.90841 0.93352 0.92424 0.97134 0.97522 0.91773 0.93054 0.91397 0.93772 0.90765 0.84305 0.83608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.19 7.95 71.98 0.57 -1.61 16 2 C -0.09 -2.03 3.65 -9.90 -0.04 -2.07 16 3 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 4 C 0.04 1.06 4.65 86.45 0.40 1.46 16 5 N -0.53 -16.81 5.44 -881.49 -4.79 -21.60 16 6 C 0.06 1.70 5.44 86.30 0.47 2.17 16 7 C 0.05 1.83 5.81 71.98 0.42 2.25 16 8 O -0.39 -19.56 10.27 -148.98 -1.53 -21.09 16 9 C 0.18 9.44 4.76 71.24 0.34 9.78 16 10 C -0.55 -34.60 9.99 25.60 0.26 -34.35 16 11 H 0.03 1.92 8.06 -2.91 -0.02 1.90 16 12 C 0.01 0.76 5.47 84.65 0.46 1.22 16 13 N -0.94 -60.85 13.96 21.45 0.30 -60.55 16 14 Si 0.96 44.37 27.47 68.60 1.88 46.26 16 15 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 16 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 17 H -0.25 -10.50 6.54 99.48 0.65 -9.85 16 18 C 0.06 1.38 5.84 86.45 0.51 1.89 16 19 C -0.08 -1.71 3.24 -9.90 -0.03 -1.75 16 20 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 21 C 0.08 1.14 4.91 86.30 0.42 1.57 16 22 N -0.86 -11.85 9.42 -186.72 -1.76 -13.60 16 23 H 0.07 0.93 6.75 -2.39 -0.02 0.92 16 24 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.06 0.92 6.82 -2.39 -0.02 0.90 16 26 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 27 H 0.05 1.31 7.69 -2.39 -0.02 1.29 16 28 H 0.07 1.73 7.88 -2.39 -0.02 1.71 16 29 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 30 H 0.05 1.62 6.56 -2.39 -0.02 1.60 16 31 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 32 H 0.01 0.55 7.20 -2.39 -0.02 0.53 16 33 H 0.01 0.35 7.57 -2.38 -0.02 0.33 16 34 H 0.27 16.09 8.31 -92.70 -0.77 15.32 16 35 H 0.05 1.18 7.48 -2.39 -0.02 1.16 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.04 0.55 6.67 -2.39 -0.02 0.54 16 38 H 0.07 1.10 6.84 -2.39 -0.02 1.08 16 39 H 0.34 4.35 8.99 -89.69 -0.81 3.54 16 40 H 0.35 3.44 9.08 -89.70 -0.81 2.62 16 Total: -1.00 -73.73 311.32 -2.77 -76.51 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -0.66 Total: 13.51 kcal Atomic # 6 Polarization: -23.22 SS G_CDS: 3.78 Total: -19.44 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -6.25 Total: -95.75 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -1.53 Total: -21.09 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Total: -73.73 -2.77 -76.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708843322.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.248 kcal (2) G-P(sol) polarization free energy of solvation -73.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds