Wall clock time and date at job start Mon Mar 30 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.28989 * 2 1 4 4 C 1.54385 * 110.32534 * 122.12276 * 2 1 3 5 5 N 1.48719 * 104.51711 * 142.67886 * 4 2 1 6 6 C 1.46898 * 111.01111 * 201.03204 * 5 4 2 7 7 C 1.52998 * 109.47682 * 305.50832 * 6 5 4 8 8 O 1.42910 * 109.46663 * 65.00020 * 7 6 5 9 9 C 1.42900 * 113.99726 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47117 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99990 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00013 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00015 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99801 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47124 * 90.00246 * 14 12 10 16 16 H 1.48501 * 109.47226 * 209.99948 * 14 12 10 17 17 H 1.48492 * 109.47115 * 330.00121 * 14 12 10 18 18 C 1.48556 * 104.29026 * 320.63799 * 5 4 2 19 19 C 1.54254 * 110.32638 * 237.86581 * 2 1 3 20 20 H 1.09009 * 110.32449 * 122.20952 * 19 2 1 21 21 C 1.53001 * 110.32404 * 0.02562 * 19 2 1 22 22 N 1.46901 * 109.47356 * 174.99956 * 21 19 2 23 23 H 1.09002 * 109.47153 * 180.70394 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.70585 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.70567 * 1 2 3 26 26 H 1.09007 * 110.40954 * 261.53122 * 4 2 1 27 27 H 1.08995 * 110.40599 * 23.97005 * 4 2 1 28 28 H 1.09001 * 109.47328 * 65.51451 * 6 5 4 29 29 H 1.09005 * 109.46983 * 185.51141 * 6 5 4 30 30 H 1.08991 * 109.47464 * 185.00107 * 7 6 5 31 31 H 1.08995 * 109.47180 * 305.00787 * 7 6 5 32 32 H 1.08995 * 109.47674 * 300.00379 * 9 8 7 33 33 H 1.09002 * 109.47025 * 60.00136 * 9 8 7 34 34 H 0.96998 * 119.99584 * 179.97438 * 13 12 10 35 35 H 1.09000 * 110.40827 * 280.65208 * 18 5 4 36 36 H 1.08992 * 110.51205 * 158.25643 * 18 5 4 37 37 H 1.09009 * 109.46357 * 294.99286 * 21 19 2 38 38 H 1.08998 * 109.47646 * 54.99154 * 21 19 2 39 39 H 1.00898 * 111.00101 * 56.03787 * 22 21 19 40 40 H 1.00900 * 111.00089 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7698 1.2261 5 7 3.2694 -1.4835 0.7212 6 6 3.6068 -2.6230 1.5846 7 6 3.7579 -2.1415 3.0290 8 8 2.4979 -1.6654 3.5065 9 6 2.5289 -1.1904 4.8539 10 6 1.1550 -0.7150 5.2507 11 1 0.3396 -0.7705 4.5447 12 6 0.9390 -0.2091 6.5150 13 7 1.9321 -0.1410 7.3745 14 14 -0.7642 0.3795 7.0070 15 1 -1.5264 -0.7494 7.5984 16 1 -0.6413 1.4711 8.0063 17 1 -1.4790 0.8848 5.8075 18 6 2.8807 -1.9416 -0.6374 19 6 2.0658 -0.7694 -1.2249 20 1 2.7083 -0.1252 -1.8253 21 6 0.9050 -1.2990 -2.0692 22 7 1.4323 -1.9233 -3.2900 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3633 0.5028 -0.8963 25 1 -0.3634 0.5248 0.8836 26 1 2.3394 -0.0758 2.0211 27 1 1.3229 -1.4832 1.5818 28 1 2.8123 -3.3674 1.5309 29 1 4.5442 -3.0674 1.2499 30 1 4.0945 -2.9683 3.6543 31 1 4.4896 -1.3347 3.0684 32 1 2.8399 -1.9977 5.5168 33 1 3.2354 -0.3639 4.9316 34 1 1.7801 0.2152 8.2638 35 1 2.2648 -2.8387 -0.5744 36 1 3.7660 -2.1310 -1.2444 37 1 0.3461 -2.0384 -1.4954 38 1 0.2456 -0.4740 -2.3387 39 1 2.0964 -2.6494 -3.0670 40 1 0.6845 -2.2816 -3.8649 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708843324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:56 Heat of formation + Delta-G solvation = -51.653073 kcal Electronic energy + Delta-G solvation = -18324.047667 eV Core-core repulsion = 15559.275085 eV Total energy + Delta-G solvation = -2764.772582 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.49660 -36.87805 -34.83072 -33.00521 -32.52795 -29.79654 -28.24859 -26.96706 -25.35892 -24.01964 -22.41228 -21.66346 -20.52390 -18.79968 -16.48945 -16.38323 -15.98828 -15.68485 -15.33016 -14.58140 -14.27227 -14.05175 -13.91222 -13.61771 -13.25072 -12.62128 -12.47387 -12.13503 -12.04832 -11.80670 -11.54369 -11.20377 -11.08456 -10.78856 -10.73874 -10.51623 -10.40935 -10.28193 -10.17799 -9.90839 -9.09699 -8.83065 -8.80265 -8.16493 -8.13745 -6.11798 -4.13564 3.28608 3.34012 3.38602 4.25179 4.33205 4.40094 4.68686 4.90335 4.92388 5.05349 5.24861 5.35772 5.38267 5.49533 5.57083 5.60718 5.68917 5.70639 5.72949 5.97484 6.06661 6.08644 6.16683 6.19165 6.26388 6.33765 6.40809 6.62478 6.80622 6.96440 7.11618 7.19665 7.24044 7.37248 7.43738 7.77611 8.14555 8.56156 8.99392 9.51364 10.99756 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.005668 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.018797 B = 4938.818589 C = 5713.609459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 H 0.076 0.924 4 C 0.055 3.945 5 N -0.511 5.511 6 C 0.050 3.950 7 C 0.061 3.939 8 O -0.393 6.393 9 C 0.194 3.806 10 C -0.512 4.512 11 H 0.065 0.935 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.905 3.095 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.036 3.964 19 C -0.086 4.086 20 H 0.083 0.917 21 C 0.067 3.933 22 N -0.853 5.853 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.057 0.943 28 H 0.038 0.962 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.003 0.997 33 H 0.005 0.995 34 H 0.264 0.736 35 H 0.035 0.965 36 H 0.075 0.925 37 H 0.028 0.972 38 H 0.077 0.923 39 H 0.338 0.662 40 H 0.338 0.662 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.045 -3.556 -16.616 16.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.117 4.117 3 H 0.095 0.905 4 C -0.072 4.072 5 N -0.235 5.235 6 C -0.078 4.078 7 C -0.017 4.017 8 O -0.313 6.313 9 C 0.120 3.880 10 C -0.551 4.551 11 H 0.083 0.917 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.733 3.267 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.196 1.196 18 C -0.092 4.092 19 C -0.106 4.106 20 H 0.102 0.898 21 C -0.064 4.064 22 N -0.382 5.382 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.020 0.980 33 H 0.023 0.977 34 H 0.073 0.927 35 H 0.053 0.947 36 H 0.093 0.907 37 H 0.047 0.953 38 H 0.095 0.905 39 H 0.150 0.850 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.594 -2.432 -16.691 16.877 hybrid contribution -1.632 -1.211 1.085 2.304 sum -1.038 -3.643 -15.605 16.059 Atomic orbital electron populations 1.21920 0.95136 1.01676 1.01619 1.22006 0.95415 0.99851 0.94441 0.90528 1.23262 0.90588 0.97757 0.95599 1.65468 1.34638 1.22043 1.01358 1.22300 1.00420 0.92389 0.92726 1.22253 0.88946 0.97754 0.92748 1.87935 1.28533 1.82356 1.32450 1.20174 0.97814 0.93071 0.76948 1.21021 0.94760 1.41115 0.98160 0.91690 1.24938 0.97629 0.95790 0.96076 1.69963 1.31264 1.46162 1.06322 0.86376 0.83588 0.78389 0.78376 1.20540 1.21070 1.19636 1.23161 0.98310 0.96013 0.91752 1.21942 0.96080 0.96818 0.95731 0.89825 1.22051 0.96307 0.98298 0.89747 1.58786 1.20526 1.38777 1.20151 0.92781 0.92807 0.92100 0.88585 0.92495 0.94422 0.90316 0.94111 0.93549 0.97958 0.97688 0.92673 0.94691 0.90706 0.95334 0.90517 0.84962 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 7.92 37.16 0.29 -1.58 16 2 C -0.10 -1.37 3.65 -89.24 -0.33 -1.69 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 4 C 0.06 0.95 4.23 -2.09 -0.01 0.95 16 5 N -0.51 -8.09 5.49 -229.84 -1.26 -9.35 16 6 C 0.05 0.79 5.63 -3.83 -0.02 0.76 16 7 C 0.06 1.14 6.04 37.16 0.22 1.37 16 8 O -0.39 -9.13 6.68 -35.23 -0.24 -9.37 16 9 C 0.19 5.26 5.69 36.00 0.20 5.46 16 10 C -0.51 -14.81 9.43 -34.44 -0.32 -15.14 16 11 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 14 Si 0.91 21.69 29.54 -169.99 -5.02 16.67 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 18 C 0.04 0.46 5.33 -2.18 -0.01 0.45 16 19 C -0.09 -1.06 3.29 -89.24 -0.29 -1.35 16 20 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 21 C 0.07 0.70 4.98 -3.82 -0.02 0.68 16 22 N -0.85 -7.87 9.62 -10.37 -0.10 -7.97 16 23 H 0.05 0.69 6.83 -51.93 -0.35 0.34 16 24 H 0.05 0.59 6.76 -51.93 -0.35 0.23 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.10 1.96 7.05 -51.92 -0.37 1.60 16 27 H 0.06 1.09 6.96 -51.93 -0.36 0.73 16 28 H 0.04 0.60 7.88 -51.93 -0.41 0.19 16 29 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 33 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.03 0.45 7.43 -51.93 -0.39 0.06 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.03 0.31 6.90 -51.92 -0.36 -0.04 16 38 H 0.08 0.80 6.52 -51.93 -0.34 0.46 16 39 H 0.34 2.88 8.31 -39.29 -0.33 2.56 16 40 H 0.34 2.52 9.08 -39.29 -0.36 2.16 16 LS Contribution 310.68 15.07 4.68 4.68 Total: -1.00 -30.17 310.68 -8.54 -38.70 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -6.96 Total: 1.27 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: -0.38 Total: -8.56 kcal Atomic # 7 Polarization: -42.77 SS G_CDS: -0.62 Total: -43.40 kcal Atomic # 8 Polarization: -9.13 SS G_CDS: -0.24 Total: -9.37 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.17 -8.54 -38.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708843324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.952 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds