Wall clock time and date at job start Mon Mar 30 2020 04:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 110.28989 * 2 1 4 4 C 1.54385 * 110.32534 * 122.12276 * 2 1 3 5 5 N 1.48719 * 104.51711 * 142.67886 * 4 2 1 6 6 C 1.46898 * 111.01111 * 201.03204 * 5 4 2 7 7 C 1.52998 * 109.47682 * 305.50832 * 6 5 4 8 8 O 1.42910 * 109.46663 * 65.00020 * 7 6 5 9 9 C 1.42900 * 113.99726 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47117 * 179.97438 * 9 8 7 11 11 H 1.08002 * 119.99990 * 0.02562 * 10 9 8 12 12 C 1.37875 * 120.00013 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00015 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99801 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47124 * 90.00246 * 14 12 10 16 16 H 1.48501 * 109.47226 * 209.99948 * 14 12 10 17 17 H 1.48492 * 109.47115 * 330.00121 * 14 12 10 18 18 C 1.48556 * 104.29026 * 320.63799 * 5 4 2 19 19 C 1.54254 * 110.32638 * 237.86581 * 2 1 3 20 20 H 1.09009 * 110.32449 * 122.20952 * 19 2 1 21 21 C 1.53001 * 110.32404 * 0.02562 * 19 2 1 22 22 N 1.46901 * 109.47356 * 174.99956 * 21 19 2 23 23 H 1.09002 * 109.47153 * 180.70394 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.70585 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.70567 * 1 2 3 26 26 H 1.09007 * 110.40954 * 261.53122 * 4 2 1 27 27 H 1.08995 * 110.40599 * 23.97005 * 4 2 1 28 28 H 1.09001 * 109.47328 * 65.51451 * 6 5 4 29 29 H 1.09005 * 109.46983 * 185.51141 * 6 5 4 30 30 H 1.08991 * 109.47464 * 185.00107 * 7 6 5 31 31 H 1.08995 * 109.47180 * 305.00787 * 7 6 5 32 32 H 1.08995 * 109.47674 * 300.00379 * 9 8 7 33 33 H 1.09002 * 109.47025 * 60.00136 * 9 8 7 34 34 H 0.96998 * 119.99584 * 179.97438 * 13 12 10 35 35 H 1.09000 * 110.40827 * 280.65208 * 18 5 4 36 36 H 1.08992 * 110.51205 * 158.25643 * 18 5 4 37 37 H 1.09009 * 109.46357 * 294.99286 * 21 19 2 38 38 H 1.08998 * 109.47646 * 54.99154 * 21 19 2 39 39 H 1.00898 * 111.00101 * 56.03787 * 22 21 19 40 40 H 1.00900 * 111.00089 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9080 1.0224 0.0000 4 6 2.0662 -0.7698 1.2261 5 7 3.2694 -1.4835 0.7212 6 6 3.6068 -2.6230 1.5846 7 6 3.7579 -2.1415 3.0290 8 8 2.4979 -1.6654 3.5065 9 6 2.5289 -1.1904 4.8539 10 6 1.1550 -0.7150 5.2507 11 1 0.3396 -0.7705 4.5447 12 6 0.9390 -0.2091 6.5150 13 7 1.9321 -0.1410 7.3745 14 14 -0.7642 0.3795 7.0070 15 1 -1.5264 -0.7494 7.5984 16 1 -0.6413 1.4711 8.0063 17 1 -1.4790 0.8848 5.8075 18 6 2.8807 -1.9416 -0.6374 19 6 2.0658 -0.7694 -1.2249 20 1 2.7083 -0.1252 -1.8253 21 6 0.9050 -1.2990 -2.0692 22 7 1.4323 -1.9233 -3.2900 23 1 -0.3633 -1.0276 0.0126 24 1 -0.3633 0.5028 -0.8963 25 1 -0.3634 0.5248 0.8836 26 1 2.3394 -0.0758 2.0211 27 1 1.3229 -1.4832 1.5818 28 1 2.8123 -3.3674 1.5309 29 1 4.5442 -3.0674 1.2499 30 1 4.0945 -2.9683 3.6543 31 1 4.4896 -1.3347 3.0684 32 1 2.8399 -1.9977 5.5168 33 1 3.2354 -0.3639 4.9316 34 1 1.7801 0.2152 8.2638 35 1 2.2648 -2.8387 -0.5744 36 1 3.7660 -2.1310 -1.2444 37 1 0.3461 -2.0384 -1.4954 38 1 0.2456 -0.4740 -2.3387 39 1 2.0964 -2.6494 -3.0670 40 1 0.6845 -2.2816 -3.8649 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708843324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:56 Heat of formation + Delta-G solvation = -74.586278 kcal Electronic energy + Delta-G solvation = -18325.042125 eV Core-core repulsion = 15559.275085 eV Total energy + Delta-G solvation = -2765.767040 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 242.174 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.68709 -38.58300 -36.02859 -34.87858 -33.86172 -31.14507 -29.58855 -28.85653 -26.63602 -25.02504 -24.52212 -23.00499 -21.83230 -19.87084 -18.58856 -17.71698 -17.47992 -16.92612 -16.54777 -16.41910 -15.56805 -15.44187 -15.18429 -14.96727 -14.77485 -13.96658 -13.72062 -13.51577 -13.43611 -13.07607 -12.99173 -12.91013 -12.79209 -12.46745 -12.31790 -12.12309 -11.66671 -11.53858 -11.40593 -11.35177 -11.18175 -10.85330 -10.18730 -9.56271 -9.42810 -8.32771 -6.44772 1.38313 1.40883 1.52808 2.33049 3.01375 3.04667 3.17499 3.54456 3.64858 3.82936 4.02099 4.22522 4.30200 4.30999 4.45398 4.50735 4.53856 4.59214 4.67923 4.72791 4.75833 4.80452 4.84592 4.91969 4.95136 5.12121 5.17189 5.24400 5.28404 5.40860 5.46381 5.53836 5.91609 5.95474 6.10473 6.26082 6.51769 6.62845 6.80361 7.27002 8.79753 Molecular weight = 242.17amu Principal moments of inertia in cm(-1) A = 0.028593 B = 0.005668 C = 0.004899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.018797 B = 4938.818589 C = 5713.609459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.095 4.095 3 H 0.073 0.927 4 C 0.062 3.938 5 N -0.522 5.522 6 C 0.058 3.942 7 C 0.052 3.948 8 O -0.397 6.397 9 C 0.210 3.790 10 C -0.541 4.541 11 H 0.061 0.939 12 C 0.007 3.993 13 N -0.932 5.932 14 Si 0.980 3.020 15 H -0.268 1.268 16 H -0.275 1.275 17 H -0.264 1.264 18 C 0.039 3.961 19 C -0.078 4.078 20 H 0.084 0.916 21 C 0.074 3.926 22 N -0.855 5.855 23 H 0.054 0.946 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.037 0.963 29 H 0.112 0.888 30 H 0.050 0.950 31 H 0.040 0.960 32 H -0.018 1.018 33 H -0.019 1.019 34 H 0.270 0.730 35 H 0.041 0.959 36 H 0.093 0.907 37 H 0.025 0.975 38 H 0.082 0.918 39 H 0.343 0.657 40 H 0.350 0.650 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.990 -3.878 -18.352 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.115 4.115 3 H 0.091 0.909 4 C -0.066 4.066 5 N -0.246 5.246 6 C -0.070 4.070 7 C -0.025 4.025 8 O -0.317 6.317 9 C 0.135 3.865 10 C -0.578 4.578 11 H 0.080 0.920 12 C -0.192 4.192 13 N -0.571 5.571 14 Si 0.803 3.197 15 H -0.193 1.193 16 H -0.200 1.200 17 H -0.188 1.188 18 C -0.088 4.088 19 C -0.097 4.097 20 H 0.103 0.897 21 C -0.057 4.057 22 N -0.386 5.386 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.056 0.944 29 H 0.130 0.870 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.000 1.000 33 H -0.001 1.001 34 H 0.079 0.921 35 H 0.059 0.941 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.100 0.900 39 H 0.156 0.844 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -0.340 -2.774 -18.456 18.666 hybrid contribution -1.231 -1.142 1.587 2.310 sum -1.571 -3.916 -16.869 17.388 Atomic orbital electron populations 1.21883 0.94129 1.01808 1.02007 1.21967 0.96267 0.99423 0.93858 0.90875 1.22998 0.90681 0.96890 0.96059 1.65455 1.33958 1.22417 1.02756 1.22307 1.02099 0.92183 0.90443 1.22550 0.87078 0.97760 0.95144 1.87939 1.31077 1.82397 1.30266 1.19771 0.96717 0.91492 0.78560 1.21320 0.95323 1.42310 0.98882 0.92048 1.25936 1.02249 0.95293 0.95677 1.70076 1.33709 1.46457 1.06857 0.85229 0.77961 0.78241 0.78289 1.19340 1.20018 1.18771 1.23229 0.99340 0.96328 0.89943 1.21872 0.96590 0.96298 0.94930 0.89746 1.21917 0.95395 0.98459 0.89941 1.58748 1.21126 1.39228 1.19492 0.92711 0.90290 0.93848 0.92753 0.94923 0.94442 0.86958 0.93180 0.94149 0.99993 1.00106 0.92115 0.94119 0.88826 0.95688 0.90022 0.84387 0.83711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 7.92 71.98 0.57 -2.94 16 2 C -0.10 -2.64 3.65 -9.90 -0.04 -2.68 16 3 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.06 2.19 4.23 86.42 0.37 2.55 16 5 N -0.52 -16.15 5.49 -881.06 -4.83 -20.98 16 6 C 0.06 1.76 5.63 86.30 0.49 2.25 16 7 C 0.05 1.99 6.04 71.98 0.43 2.43 16 8 O -0.40 -19.26 6.68 -148.98 -0.99 -20.25 16 9 C 0.21 11.91 5.69 71.24 0.41 12.31 16 10 C -0.54 -32.20 9.43 25.60 0.24 -31.96 16 11 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 12 C 0.01 0.40 5.46 84.65 0.46 0.86 16 13 N -0.93 -56.54 13.29 21.45 0.28 -56.25 16 14 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 16 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 18 C 0.04 0.92 5.33 86.45 0.46 1.38 16 19 C -0.08 -1.75 3.29 -9.90 -0.03 -1.78 16 20 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 21 C 0.07 1.36 4.98 86.30 0.43 1.79 16 22 N -0.86 -13.26 9.62 -186.71 -1.80 -15.06 16 23 H 0.05 1.35 6.83 -2.39 -0.02 1.33 16 24 H 0.08 1.56 6.76 -2.39 -0.02 1.54 16 25 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 26 H 0.05 2.36 7.05 -2.38 -0.02 2.34 16 27 H 0.03 1.30 6.96 -2.39 -0.02 1.28 16 28 H 0.04 1.15 7.88 -2.39 -0.02 1.13 16 29 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 33 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 34 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 35 H 0.04 0.93 7.43 -2.39 -0.02 0.92 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.02 0.49 6.90 -2.38 -0.02 0.47 16 38 H 0.08 1.45 6.52 -2.39 -0.02 1.44 16 39 H 0.34 4.80 8.31 -89.70 -0.75 4.05 16 40 H 0.35 4.18 9.08 -89.69 -0.81 3.37 16 Total: -1.00 -66.06 310.68 -2.07 -68.13 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -0.54 Total: 13.64 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 3.79 Total: -15.78 kcal Atomic # 7 Polarization: -85.94 SS G_CDS: -6.35 Total: -92.29 kcal Atomic # 8 Polarization: -19.26 SS G_CDS: -0.99 Total: -20.25 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -66.06 -2.07 -68.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708843324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.454 kcal (2) G-P(sol) polarization free energy of solvation -66.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds